Carg24529 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24529
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger CCCH domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_121 : 381243 .. 384225 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGGGAAACGTGGTCCATGTGATCCCCGGGATGAGTAGCGAGAATTGGCCCGGTGAAGTTTGGGCTACCGAAGAAGAATACAGAGCTTGGAACAATGGCGGTGGTGATGGTTCCATTGATACGCCTTCTAATTCGAGTTATGATCAAAGACAATCCCAAAGCCGATCCGGAAGCGAACCCCCAAACAAGAAATCCAGAAGCTCACAGGATGTTACCTCTTCCAATCGATCAAAAGCGATTGGTAAAATGTTCTTCAAGACCAAACTCTGCTGCAAATTTCGTGCTGGAACCTGCCCTTACATCACGAACTGCAATTTCGCTCATAGCATTGAGGAGCTCCGGCGGCCACCACATAATTGGCAGGTATTAGAATTGGTTCTTAGTTAGTATTTTGTGTTAGGAATCACGACTCTCCACACAATAGTATGATATTTAGTATGATATTGTCTATTTTAAGCTAGAGCCTCCTCTTAGGTCTATGTAGCCGTTCGACACGTAAGTCACTTTTGATTACATCTTCCAAGCAAGCAATTGCTTTGTTAGGATTCTCGACATGACACTCTGATACTATGTTAGGAATCATAACACTCCACCATGAGCATTGCTTTGGGCTTTGCTTATAATGGAGATGTATTTCTTACTTATGAACTCATGATCATTAGCCAAGGGAAGGCTTTCCAAAAGGCCTCATATAATGGAGATGTATTTTTTACTTATGAACTCATGATCATTAGCCAACGTGGGACTCCCTCCTAACCGTGCTCAACATTTTGTTGGGTTTAATTTTTAGAATATCAAGAGTTCCTAATTGCAATGAGTGTTGTTAGCAGGAAATTGTGGCGGCACATGAAGAAGAGAAGGTATTTTCAGAGCCAAGGGAGGAATTTCAGATTCCTTCACTTGGGACATCAAATTTTGGTTCAGAGTCGCAGAGGTCATATAAAGGAAGACATTGCAAGAAGTTTTACACAGAGGAGGGCTGTCCATATGGGGATAGTTGTACGTTTCTTCATGATGAGCAGTCAAAGAATCGAGAGAGTGTGGCAATAAGCTTGGGACCTGGTGGCTACAGTGGCGGCGGTGGCGGCGGCGGCGGTGGTGGTGGTGGTTCAGGAAATGGATCCAACAGTAAGCCTTCGAATTGGAAAACAAGGATTTGTAACAAGTGGGAGTTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGAGCTGCTGGTATGTTTCTTCTATTATCAATCCTTGTGTTAATGACATAGCTCATTCTTTGCTTTGGGTCTAGGACTCCATCATGAACATGCTAGAAACTTCTTAATTGTGGAACTTGAATGACACTATAATATTTGTGAGATCCCACGTCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGAAAACTTCTTCCTACTAGACGCGTTTTGAAAAACCTTGAGGGAAATCCGAAAGGGAAAACCCAAAGAGGGCAATATGTGTTAGTAGTGGTCTTAGGCTGTTACAAATGATATCAGAGCCAGACACTGGACGGTGTGTCAGCAAGGATGCTGAGTCCTGAAGGGGGTGGACATTGGGCGATGTGCCAGCGAGGACGCTGGCCCCCATGGGGAGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACAAAGCATTTTTTATAAGGGTGTGGAAAACTCTTCTTAGCGGATGCGTTTTAAAAACTTTAGGGGAAGCCCGAGAGGGAAAGCCCAAAGAGGACAATATCTGTTATTGGTAGGCTTGGGTTATTTTGTATCAGAGCCAGACACCGGGCGATGTACCAGCGAGGAGGCTGAGCCCCAAAGGGGGTACACACCAGGCGGTGTGCCCGCGAGTACGTTGGGTCCTAAAGGAGGTGGATTGGGGGACCCACATCGATTGGAGAGAGGAACGAGTGCCAACGAGAATGTTAGCCCCAAAGGGGGTAGGTTGTGGAGATCCCACATCGGTTGGAGAGCGGAATGAAACATATTCTTTATAAGGGTGTGGAAATCTCTCCCTACCAGACGCGTTTTAAAAACCTCGAGGGAAAATCCGAAAGGGAAGTTTATATCGACAAAGTGTATAAGTTGAGGATCAACATGGTTATGCCATATGCTGATTTGTTGTCATTCTCATGCATATCTAACAATGCTTCCATGCTTTTGTTTCTTTGAATTACTGATATTTATCTGAACGTCGATATAGCCATATAGACCGAGTCGGTTACTTGTTTAGACCGATAAACATACGAACATTGTCGTGTCCCGTTGAACAAAACGGATATTGAACGAGCTGTTTAGTTTGTGGTTTAGATTTAATACTTTGAATTAACCACAGAATTACACCGTTATGGTGGTGGGCTTATGGAGACAGAAACTAGAGACTCTTCATCAGCTCCTCCTGACCTGAAGCAGGGTGTATTGCCTAAAGCTCCTGGCGATACTTTGGTTGCTTCTGTTCCTTCACTACCTCATTCAGATGTTTATCATATTGTGGTTCCATCACAGAGGTCAACCATTGTAATTCAGAGGTCGGGTCAGCGAACTCATCAGAAATGGAAGGGCCCCGATAAAATCAGTCGGATATATGGTGACTGGATTGACGACATCGAATAATATCATATTCAAGAAACCGTTGAACGTGAATAACGAGCATCATGATGGACTTGGTCTCTTGTAAACCTTTGGCAGATGAAGATTCTGTTTGTTCGGGTTATGTTTCGGTTGGTTCTTTTCGTATTCTCGTTCCTAACCCGCTTCATGTCCGATCTATGGTCTTTATCTGTTAGTGTTGTTATTTATGTAGTTACTATATGTAATCCTTTTCATTGAAAGAAGAGAGAAATGTATGATTTTCACCACTTATCAGTTCATCATGGTCTTCGATCTTAATGTAATGGGAACTAAGGAGCAAGGCAGAGTGTCGTAGTCATGTTTGTCTAAGACGTGTTGTCTATGAGCGCATATCCGT

mRNA sequence

TGGGGGAAACGTGGTCCATGTGATCCCCGGGATGAGTAGCGAGAATTGGCCCGGTGAAGTTTGGGCTACCGAAGAAGAATACAGAGCTTGGAACAATGGCGGTGGTGATGGTTCCATTGATACGCCTTCTAATTCGAGTTATGATCAAAGACAATCCCAAAGCCGATCCGGAAGCGAACCCCCAAACAAGAAATCCAGAAGCTCACAGGATGTTACCTCTTCCAATCGATCAAAAGCGATTGGTAAAATGTTCTTCAAGACCAAACTCTGCTGCAAATTTCAGCCAAGGGAGGAATTTCAGATTCCTTCACTTGGGACATCAAATTTTGGTTCAGAGTCGCAGAGGTCATATAAAGGAAGACATTGCAAGAAGTTTTACACAGAGGAGGGCTGTCCATATGGGGATAGTTGTACGTTTCTTCATGATGAGCAGTCAAAGAATCGAGAGAGTGTGGCAATAAGCTTGGGACCTGGTGGCTACAGTGGCGGCGGTGGCGGCGGCGGCGGTGGTGGTGGTGGTTCAGGAAATGGATCCAACAGTAAGCCTTCGAATTGGAAAACAAGGATTTGTAACAAGTGGGAGTTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGAGCTGCTGAATTACACCGTTATGGTGGTGGGCTTATGGAGACAGAAACTAGAGACTCTTCATCAGCTCCTCCTGACCTGAAGCAGGGTGTATTGCCTAAAGCTCCTGGCGATACTTTGGTTGCTTCTGTTCCTTCACTACCTCATTCAGATGTTTATCATATTGTGGTTCCATCACAGAGGTCAACCATTGTAATTCAGAGGTCGGGTCAGCGAACTCATCAGAAATGGAAGGGCCCCGATAAAATCAGTCGGATATATGGTGACTGGATTGACGACATCGAATAATATCATATTCAAGAAACCGTTGAACGTGAATAACGAGCATCATGATGGACTTGGTCTCTTGTAAACCTTTGGCAGATGAAGATTCTGTTTGTTCGGGTTATGTTTCGGTTGGTTCTTTTCGTATTCTCGTTCCTAACCCGCTTCATGTCCGATCTATGGTCTTTATCTGTTAGTGTTGTTATTTATGTAGTTACTATATGTAATCCTTTTCATTGAAAGAAGAGAGAAATGTATGATTTTCACCACTTATCAGTTCATCATGGTCTTCGATCTTAATGTAATGGGAACTAAGGAGCAAGGCAGAGTGTCGTAGTCATGTTTGTCTAAGACGTGTTGTCTATGAGCGCATATCCGT

Coding sequence (CDS)

ATGAGTAGCGAGAATTGGCCCGGTGAAGTTTGGGCTACCGAAGAAGAATACAGAGCTTGGAACAATGGCGGTGGTGATGGTTCCATTGATACGCCTTCTAATTCGAGTTATGATCAAAGACAATCCCAAAGCCGATCCGGAAGCGAACCCCCAAACAAGAAATCCAGAAGCTCACAGGATGTTACCTCTTCCAATCGATCAAAAGCGATTGGTAAAATGTTCTTCAAGACCAAACTCTGCTGCAAATTTCAGCCAAGGGAGGAATTTCAGATTCCTTCACTTGGGACATCAAATTTTGGTTCAGAGTCGCAGAGGTCATATAAAGGAAGACATTGCAAGAAGTTTTACACAGAGGAGGGCTGTCCATATGGGGATAGTTGTACGTTTCTTCATGATGAGCAGTCAAAGAATCGAGAGAGTGTGGCAATAAGCTTGGGACCTGGTGGCTACAGTGGCGGCGGTGGCGGCGGCGGCGGTGGTGGTGGTGGTTCAGGAAATGGATCCAACAGTAAGCCTTCGAATTGGAAAACAAGGATTTGTAACAAGTGGGAGTTGACAGGATATTGCCCATTTGGAAGCAAATGCCATTTTGCTCATGGAGCTGCTGAATTACACCGTTATGGTGGTGGGCTTATGGAGACAGAAACTAGAGACTCTTCATCAGCTCCTCCTGACCTGAAGCAGGGTGTATTGCCTAAAGCTCCTGGCGATACTTTGGTTGCTTCTGTTCCTTCACTACCTCATTCAGATGTTTATCATATTGTGGTTCCATCACAGAGGTCAACCATTGTAATTCAGAGGTCGGGTCAGCGAACTCATCAGAAATGGAAGGGCCCCGATAAAATCAGTCGGATATATGGTGACTGGATTGACGACATCGAATAA

Protein sequence

MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKAIGKMFFKTKLCCKFQPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYSGGGGGGGGGGGGSGNGSNSKPSNWKTRICNKWELTGYCPFGSKCHFAHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPSQRSTIVIQRSGQRTHQKWKGPDKISRIYGDWIDDIE

Homology

[Close]

BLAST of Carg24529 vs. NCBI nr
Match: XP_022963759.1 (zinc finger CCCH domain-containing protein 12 isoform X2 [Cucurbita moschata])

HSP 1 Score: 521.5 bits (1342), Expect = 1.8e-144
Identity = 293/335 (87.46%), Postives = 294/335 (87.76%), Query Frame = 0


Query: 1   MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 60
           MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD
Sbjct: 15  MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 74

Query: 61  VTSSNRSKAIGKMFFKTKLCCKF------------------------------------- 120
           VTSSNRSKAIGKMFFKTKLCCKF                                     
Sbjct: 75  VTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPHNWQEIVAAHEEE 134

Query: 121 ----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE 180
               +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE
Sbjct: 135 KVFSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE 194

Query: 181 SVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFAH 240
           SVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFAH
Sbjct: 195 SVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFAH 254

Query: 241 GAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPSQ 295
           GAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPSQ
Sbjct: 255 GAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPSQ 314

[Close]

BLAST of Carg24529 vs. NCBI nr
Match: XP_022963758.1 (zinc finger CCCH domain-containing protein 12 isoform X1 [Cucurbita moschata])

HSP 1 Score: 521.2 bits (1341), Expect = 2.3e-144
Identity = 293/336 (87.20%), Postives = 294/336 (87.50%), Query Frame = 0


Query: 1   MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 60
           MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD
Sbjct: 15  MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 74

Query: 61  VTSSNRSKAIGKMFFKTKLCCKF------------------------------------- 120
           VTSSNRSKAIGKMFFKTKLCCKF                                     
Sbjct: 75  VTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPHNWQQEIVAAHEE 134

Query: 121 -----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 180
                +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR
Sbjct: 135 EKVFSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 194

Query: 181 ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA 240
           ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA
Sbjct: 195 ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA 254

Query: 241 HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS 295
           HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS
Sbjct: 255 HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS 314

[Close]

BLAST of Carg24529 vs. NCBI nr
Match: XP_022963761.1 (zinc finger CCCH domain-containing protein 12 isoform X4 [Cucurbita moschata])

HSP 1 Score: 521.2 bits (1341), Expect = 2.3e-144
Identity = 293/336 (87.20%), Postives = 294/336 (87.50%), Query Frame = 0


Query: 1   MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 60
           MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD
Sbjct: 1   MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 60

Query: 61  VTSSNRSKAIGKMFFKTKLCCKF------------------------------------- 120
           VTSSNRSKAIGKMFFKTKLCCKF                                     
Sbjct: 61  VTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPHNWQQEIVAAHEE 120

Query: 121 -----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 180
                +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR
Sbjct: 121 EKVFSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 180

Query: 181 ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA 240
           ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA
Sbjct: 181 ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA 240

Query: 241 HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS 295
           HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS
Sbjct: 241 HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS 300

[Close]

BLAST of Carg24529 vs. NCBI nr
Match: XP_023511668.1 (zinc finger CCCH domain-containing protein 12 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 516.5 bits (1329), Expect = 5.8e-143
Identity = 293/337 (86.94%), Postives = 294/337 (87.24%), Query Frame = 0


Query: 1   MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 60
           MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD
Sbjct: 15  MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 74

Query: 61  VTSSNRSKAIGKMFFKTKLCCKF------------------------------------- 120
           VTSSNRSKAIGKMFFKTKLCCKF                                     
Sbjct: 75  VTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPHNWQEIVAAHEEE 134

Query: 121 ----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE 180
               +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE
Sbjct: 135 KVFSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE 194

Query: 181 SVA--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHF 240
           SVA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHF
Sbjct: 195 SVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHF 254

Query: 241 AHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVP 295
           AHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVP
Sbjct: 255 AHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVP 314

[Close]

BLAST of Carg24529 vs. NCBI nr
Match: XP_023511670.1 (zinc finger CCCH domain-containing protein 12 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 516.2 bits (1328), Expect = 7.5e-143
Identity = 293/338 (86.69%), Postives = 294/338 (86.98%), Query Frame = 0


Query: 1   MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 60
           MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD
Sbjct: 1   MSSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 60

Query: 61  VTSSNRSKAIGKMFFKTKLCCKF------------------------------------- 120
           VTSSNRSKAIGKMFFKTKLCCKF                                     
Sbjct: 61  VTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPHNWQQEIVAAHEE 120

Query: 121 -----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 180
                +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR
Sbjct: 121 EKVFSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 180

Query: 181 ESVA--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCH 240
           ESVA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCH
Sbjct: 181 ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCH 240

Query: 241 FAHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVV 295
           FAHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVV
Sbjct: 241 FAHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVV 300

[Close]

BLAST of Carg24529 vs. TAIR10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 241.5 bits (615), Expect = 6.5e-64
Identity = 183/372 (49.19%), Postives = 203/372 (54.57%), Query Frame = 0


Query: 4   ENW-----PGEVWATEEEY-RAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRS 63
           +NW        VWATE++Y RAW           P N+S                     
Sbjct: 24  DNWFPNLGDSAVWATEDDYNRAW--------AMNPDNTS-XXXXXXXXXXXXXXXXXXXX 83

Query: 64  SQDVTSSNRSKAIGKMFFKTKLCCKFQ--------------------------------- 123
                    +KAIGKMFFKTKLCCKF+                                 
Sbjct: 84  XXXXXXXXXTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAH 143

Query: 124 ------------------PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDS 183
                             PREEFQIPSL +S   +ES RS+KGRHCKKFYTEEGCPYG+S
Sbjct: 144 EEERSGGMGTPTVSVVEIPREEFQIPSLVSST--AESGRSFKGRHCKKFYTEEGCPYGES 203

Query: 184 CTFLHDEQSKNR--------------------ESVAXXXXXXXXXXXXXXXXXXXXXXXX 243
           CTFLHDE S+NR                        XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 204 CTFLHDEASRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 263

Query: 244 XXXXXPSNWKTRICNKWELTGYCPFGSKCHFAHGAAELHRYGGGLMETETRDSSSAPPDL 295
           X    PSNWKTRICNKWE+TGYCPFG+KCHFAHGAAELHR+GGGL+E E +D  S  PD 
Sbjct: 264 XQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDT 323

[Close]

BLAST of Carg24529 vs. TAIR10
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 104/272 (38.24%), Postives = 134/272 (49.26%), Query Frame = 0


Query: 25  GDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKAIGKMFFKTKLCCKFQ 84
           GD S+   +   Y +  + +  G+E P+KK+RSS        S  IGK FFKTKLC KF+
Sbjct: 30  GDSSV-WATEDDYSRVWAINSDGAESPSKKTRSSS-------SSEIGKSFFKTKLCFKFR 89

Query: 85  PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAXX 144
                     GT  + + S          +        + ++ T    E S+NRES A  
Sbjct: 90  ---------AGTCPYSASSCHFAHSAEELRLPXXXXXNWQETVT----EASRNRESFA-- 149

Query: 145 XXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFAHGAAEL 204
                                        NWKTRICNKW+ TGYCPFGS CHFAHG +EL
Sbjct: 150 -------------VSLGPRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 209

Query: 205 HRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPSQR--ST 264
           H +GGGL+E E +  +SA  D KQ    +   DT+ + V            V SQR  S 
Sbjct: 210 HTFGGGLVEGECKIGTSATLDTKQ----RGQVDTVTSLVSP---------GVSSQRTSSA 252

Query: 265 IVIQRSGQRTHQKWKGPDKISRIYGDWIDDIE 295
           +  + +G RT +KWKGPDKISR+YGDWIDDIE
Sbjct: 270 VTQKPNGVRTQRKWKGPDKISRVYGDWIDDIE 252

[Close]

BLAST of Carg24529 vs. TAIR10
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20
Identity = 66/215 (30.70%), Postives = 96/215 (44.65%), Query Frame = 0


Query: 97  SNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRES---------VAXXXXX 156
           +N+  + +   + + C+KF   E CPYGD C F+H++ SK RE          ++     
Sbjct: 174 NNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATA 233

Query: 157 XXXXXXXXXXXXXXXXXXXXXXXXPSN---------WKTRICNKWELTGYCPFGSKCHFA 216
                                   P N         WKTR+C K+++TG CPFG KCHFA
Sbjct: 234 ADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFA 293

Query: 217 HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS 276
           HG AELH    G +E E  ++ ++    KQ V+   P +   A  P           V +
Sbjct: 294 HGQAELHN-SVGRVEGEAMNAVASVN--KQAVV---PANEAFAMKPITQ--------VTA 353

Query: 277 QRSTIVIQRSGQRTHQKWKGPDKISRIYGDWIDDI 294
             S +  +   ++   KW    KI+RIYGDWIDD+
Sbjct: 354 DSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDDL 374

[Close]

BLAST of Carg24529 vs. TAIR10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 18/29 (62.07%), Postives = 21/29 (72.41%), Query Frame = 0


Query: 176 KTRICNKWELTGYCPFGSKCHFAHGAAEL 205
           KT +CNKW+ TG CP+G  C FAHG  EL
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL 252

[Close]

BLAST of Carg24529 vs. TAIR10
Match: AT3G12130.1 (KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 173 SNWKTRICNKWELTGYCPFGSKCHFAHGAAELHRYG 209
           SN+KT+IC ++   G C FG +CHFAHG AEL + G
Sbjct: 212 SNFKTKICERFS-KGNCTFGDRCHFAHGEAELRKSG 246

HSP 2 Score: 37.7 bits (86), Expect = 1.4e-02
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 0


Query: 108 KGRHCKKFYTEEGCPYGDSCTFLH 132
           K + C KF++  GCP+G++C FLH
Sbjct: 38  KSKPCTKFFSTSGCPFGENCHFLH 61

[Close]

BLAST of Carg24529 vs. Swiss-Prot
Match: sp|Q84UQ3|C3H56_ORYSJ (Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159800 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.1e-68
Identity = 170/289 (58.82%), Postives = 191/289 (66.09%), Query Frame = 0


Query: 67  SKAIGKMFFKTKLCCKF--------------------------------------QPREE 126
           S+AIGKMFFKTKLCCKF                                      + REE
Sbjct: 80  SRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNWQEIVAAHEEATEAREE 139

Query: 127 FQIPSLGTSN------------FGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSK 186
            QIP + +S                    +YKGRHCKKFYT+EGCPYGD+CTFLHDEQSK
Sbjct: 140 HQIPIMTSSGPTAXXXXXXXXXXXXXXXXAYKGRHCKKFYTDEGCPYGDACTFLHDEQSK 199

Query: 187 NRESV--------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGY 246
            RESV         XXXXXXXXXXXXXXXXXXXXXXXXX    PSNWKTRICNKWE+TGY
Sbjct: 200 ARESVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMQKPSNWKTRICNKWEMTGY 259

Query: 247 CPFGSKCHFAHGAAELHRYGGGLMETETRDSSSAPPDLKQGVL-PKAPGDTLVASVPSLP 295
           CPFGSKCHFAHGAAELH+YGGGL++ ++RD ++A PD KQ V+  KAP +T  AS   LP
Sbjct: 260 CPFGSKCHFAHGAAELHKYGGGLVDIDSRD-AAATPDSKQAVVSAKAPAETAAASTTVLP 319

[Close]

BLAST of Carg24529 vs. Swiss-Prot
Match: sp|Q9LQM3|C3H12_ARATH (Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=At1g32360 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.2e-62
Identity = 183/372 (49.19%), Postives = 203/372 (54.57%), Query Frame = 0


Query: 4   ENW-----PGEVWATEEEY-RAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRS 63
           +NW        VWATE++Y RAW           P N+S                     
Sbjct: 24  DNWFPNLGDSAVWATEDDYNRAW--------AMNPDNTS-XXXXXXXXXXXXXXXXXXXX 83

Query: 64  SQDVTSSNRSKAIGKMFFKTKLCCKFQ--------------------------------- 123
                    +KAIGKMFFKTKLCCKF+                                 
Sbjct: 84  XXXXXXXXXTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVEELRRPPPNWQEIVAAH 143

Query: 124 ------------------PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDS 183
                             PREEFQIPSL +S   +ES RS+KGRHCKKFYTEEGCPYG+S
Sbjct: 144 EEERSGGMGTPTVSVVEIPREEFQIPSLVSST--AESGRSFKGRHCKKFYTEEGCPYGES 203

Query: 184 CTFLHDEQSKNR--------------------ESVAXXXXXXXXXXXXXXXXXXXXXXXX 243
           CTFLHDE S+NR                        XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 204 CTFLHDEASRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 263

Query: 244 XXXXXPSNWKTRICNKWELTGYCPFGSKCHFAHGAAELHRYGGGLMETETRDSSSAPPDL 295
           X    PSNWKTRICNKWE+TGYCPFG+KCHFAHGAAELHR+GGGL+E E +D  S  PD 
Sbjct: 264 XQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEEGKDGVSPNPDT 323

[Close]

BLAST of Carg24529 vs. Swiss-Prot
Match: sp|Q5PP65|C3H28_ARATH (Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN=At2g35430 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-34
Identity = 104/272 (38.24%), Postives = 134/272 (49.26%), Query Frame = 0


Query: 25  GDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDVTSSNRSKAIGKMFFKTKLCCKFQ 84
           GD S+   +   Y +  + +  G+E P+KK+RSS        S  IGK FFKTKLC KF+
Sbjct: 30  GDSSV-WATEDDYSRVWAINSDGAESPSKKTRSSS-------SSEIGKSFFKTKLCFKFR 89

Query: 85  PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAXX 144
                     GT  + + S          +        + ++ T    E S+NRES A  
Sbjct: 90  ---------AGTCPYSASSCHFAHSAEELRLPXXXXXNWQETVT----EASRNRESFA-- 149

Query: 145 XXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFAHGAAEL 204
                                        NWKTRICNKW+ TGYCPFGS CHFAHG +EL
Sbjct: 150 -------------VSLGPRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSEL 209

Query: 205 HRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPSQR--ST 264
           H +GGGL+E E +  +SA  D KQ    +   DT+ + V            V SQR  S 
Sbjct: 210 HTFGGGLVEGECKIGTSATLDTKQ----RGQVDTVTSLVSP---------GVSSQRTSSA 252

Query: 265 IVIQRSGQRTHQKWKGPDKISRIYGDWIDDIE 295
           +  + +G RT +KWKGPDKISR+YGDWIDDIE
Sbjct: 270 VTQKPNGVRTQRKWKGPDKISRVYGDWIDDIE 252

[Close]

BLAST of Carg24529 vs. Swiss-Prot
Match: sp|Q9LT81|C3H39_ARATH (Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=At3g19360 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.7e-19
Identity = 66/215 (30.70%), Postives = 96/215 (44.65%), Query Frame = 0


Query: 97  SNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRES---------VAXXXXX 156
           +N+  + +   + + C+KF   E CPYGD C F+H++ SK RE          ++     
Sbjct: 174 NNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATA 233

Query: 157 XXXXXXXXXXXXXXXXXXXXXXXXPSN---------WKTRICNKWELTGYCPFGSKCHFA 216
                                   P N         WKTR+C K+++TG CPFG KCHFA
Sbjct: 234 ADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFA 293

Query: 217 HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS 276
           HG AELH    G +E E  ++ ++    KQ V+   P +   A  P           V +
Sbjct: 294 HGQAELHN-SVGRVEGEAMNAVASVN--KQAVV---PANEAFAMKPITQ--------VTA 353

Query: 277 QRSTIVIQRSGQRTHQKWKGPDKISRIYGDWIDDI 294
             S +  +   ++   KW    KI+RIYGDWIDD+
Sbjct: 354 DSSGLNEEGRRKKCLLKWSDSKKINRIYGDWIDDL 374

[Close]

BLAST of Carg24529 vs. Swiss-Prot
Match: sp|Q7F8R0|C3H14_ORYSJ (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.5e-09
Identity = 54/183 (29.51%), Postives = 71/183 (38.80%), Query Frame = 0


Query: 108 KGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAXXXXXXXXXXXXXXXXXXXXXXXXX 167
           K + C KF++  GCP+G+ C FLH       ++VA                         
Sbjct: 35  KSKPCTKFFSTSGCPFGEGCHFLHHFPG-GYQAVAKMTNLGGPAIAPPPGRMPMGNAVPD 94

Query: 168 XXXXPSNWKTRICNKWELTGYCPFGSKCHFAHGAAELHRYGGGLMETETRDSSSAPP--D 227
               P+  KTR+CNK+     C +G KCHFAHG  EL +           DSS  PP   
Sbjct: 95  GPPTPT-VKTRLCNKYNTAEGCKWGDKCHFAHGERELGK-------PMLMDSSMPPPMGP 154

Query: 228 LKQGVLPKAPGDTLVASVP-SLPHSDVYHIVVPSQRSTIVIQRSGQRTHQKWKGPDKISR 287
              G     P  +   S P S   S    I V +  +  +I R G  T Q       ISR
Sbjct: 155 RPTGHFAPPPMPSPAMSTPASFGASATAKISVDASLAGGIIGRGGVNTKQ-------ISR 201

[Close]

BLAST of Carg24529 vs. TrEMBL
Match: tr|A0A1S3CQH8|A0A1S3CQH8_CUCME (zinc finger CCCH domain-containing protein 12 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503556 PE=4 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.1e-137
Identity = 281/335 (83.88%), Postives = 288/335 (85.97%), Query Frame = 0


Query: 2   SSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV 61
           SSENWPGEVWATE+EYRAWNN GGDGS+DTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV
Sbjct: 16  SSENWPGEVWATEDEYRAWNN-GGDGSVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV 75

Query: 62  TSSNRSKAIGKMFFKTKLCCKF-------------------------------------- 121
           TSSNRSKAIGKMFFKTKLCCKF                                      
Sbjct: 76  TSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFGHSIEELRRPPHNWQEIVAAHEEEK 135

Query: 122 ----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE 181
               +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE
Sbjct: 136 AVLSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE 195

Query: 182 SVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFAH 241
           SVA XXXXXXXXXXXXXXXXXXXXXXXXXXX PSNWKTRICNKWELTGYCPFG+KCHFAH
Sbjct: 196 SVA-XXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWELTGYCPFGNKCHFAH 255

Query: 242 GAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPSQ 295
           GAAELHRYGGGLMETETRDSS+APPD KQGVLPKAPGDTLVASVPS+PHSDVYH+VVPSQ
Sbjct: 256 GAAELHRYGGGLMETETRDSSAAPPDPKQGVLPKAPGDTLVASVPSVPHSDVYHVVVPSQ 315

[Close]

BLAST of Carg24529 vs. TrEMBL
Match: tr|A0A1S3CQ64|A0A1S3CQ64_CUCME (zinc finger CCCH domain-containing protein 12 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503556 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 1.4e-137
Identity = 281/336 (83.63%), Postives = 288/336 (85.71%), Query Frame = 0


Query: 2   SSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV 61
           SSENWPGEVWATE+EYRAWNN GGDGS+DTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV
Sbjct: 16  SSENWPGEVWATEDEYRAWNN-GGDGSVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV 75

Query: 62  TSSNRSKAIGKMFFKTKLCCKF-------------------------------------- 121
           TSSNRSKAIGKMFFKTKLCCKF                                      
Sbjct: 76  TSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFGHSIEELRRPPHNWQQEIVAAHEEE 135

Query: 122 -----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 181
                +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR
Sbjct: 136 KAVLSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 195

Query: 182 ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA 241
           ESVA XXXXXXXXXXXXXXXXXXXXXXXXXXX PSNWKTRICNKWELTGYCPFG+KCHFA
Sbjct: 196 ESVA-XXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWELTGYCPFGNKCHFA 255

Query: 242 HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS 295
           HGAAELHRYGGGLMETETRDSS+APPD KQGVLPKAPGDTLVASVPS+PHSDVYH+VVPS
Sbjct: 256 HGAAELHRYGGGLMETETRDSSAAPPDPKQGVLPKAPGDTLVASVPSVPHSDVYHVVVPS 315

[Close]

BLAST of Carg24529 vs. TrEMBL
Match: tr|A0A0A0LK26|A0A0A0LK26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901160 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 1.4e-137
Identity = 282/338 (83.43%), Postives = 289/338 (85.50%), Query Frame = 0


Query: 2   SSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV 61
           S+ENWPGEVWATE+EYRAWNN GGDGS+DTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV
Sbjct: 16  SNENWPGEVWATEDEYRAWNN-GGDGSVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV 75

Query: 62  TSSNRSKAIGKMFFKTKLCCKF-------------------------------------- 121
           TSSNRSKAIGKMFFKTKLCCKF                                      
Sbjct: 76  TSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPHNWQEIVAAHEEEK 135

Query: 122 ----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE 181
               +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE
Sbjct: 136 AVLSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRE 195

Query: 182 SVA---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCH 241
           SVA   XXXXXXXXXXXXXXXXXXXXXXXXXXXX PSNWKTRICNKWELTGYCPFG+KCH
Sbjct: 196 SVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWELTGYCPFGNKCH 255

Query: 242 FAHGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVV 295
           FAHGAAELHRYGGGLMETETRDSS+APPDLKQGVLPKAPGDTLVASVPS PHSDVYH+VV
Sbjct: 256 FAHGAAELHRYGGGLMETETRDSSAAPPDLKQGVLPKAPGDTLVASVPSAPHSDVYHVVV 315

[Close]

BLAST of Carg24529 vs. TrEMBL
Match: tr|A0A1S3CRN1|A0A1S3CRN1_CUCME (zinc finger CCCH domain-containing protein 12 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103503556 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 3.8e-127
Identity = 269/336 (80.06%), Postives = 276/336 (82.14%), Query Frame = 0


Query: 2   SSENWPGEVWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV 61
           SSENWPGEVWATE+EYRAWNN GGDGS+DTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV
Sbjct: 16  SSENWPGEVWATEDEYRAWNN-GGDGSVDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQDV 75

Query: 62  TSSNRSKAIGKMFFKTKLCCKF-------------------------------------- 121
           TSSNRSKAIGKMFFKTKLCCKF                                      
Sbjct: 76  TSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFGHSIEELRRPPHNWQQEIVAAHEEE 135

Query: 122 -----QPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 181
                +PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR
Sbjct: 136 KAVLSEPREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 195

Query: 182 ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA 241
           ESVA XXXXXXXXXXXXXXXXXXXXXXXXXXX PSNWKTRICNKWELTGYCPFG+KCHFA
Sbjct: 196 ESVA-XXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWELTGYCPFGNKCHFA 255

Query: 242 HGAAELHRYGGGLMETETRDSSSAPPDLKQGVLPKAPGDTLVASVPSLPHSDVYHIVVPS 295
           HGAA            ETRDSS+APPD KQGVLPKAPGDTLVASVPS+PHSDVYH+VVPS
Sbjct: 256 HGAA------------ETRDSSAAPPDPKQGVLPKAPGDTLVASVPSVPHSDVYHVVVPS 315

[Close]

BLAST of Carg24529 vs. TrEMBL
Match: tr|A0A2P5BGV1|A0A2P5BGV1_PARAD (Zinc finger, CCCH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_240030 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 5.0e-111
Identity = 232/338 (68.64%), Postives = 257/338 (76.04%), Query Frame = 0


Query: 3   SENWPGE--VWATEEEYRAWNNGGGDGSIDTPSNSSYDQRQSQSRSGSEPPNKKSRSSQD 62
           SENW G+  +WATE++YRAWNN    G  DT SNS+YDQRQSQ+RSGSEPP+KKS++SQD
Sbjct: 19  SENWSGDQAIWATEDDYRAWNNSETSG--DTFSNSNYDQRQSQTRSGSEPPSKKSKNSQD 78

Query: 63  VTSSNRSKAIGKMFFKTKLCCKFQ------------------------------------ 122
           VTSSNRSKAIGKMFFKTKLCCKF+                                    
Sbjct: 79  VTSSNRSKAIGKMFFKTKLCCKFRTGTCPYISNCNFAHSIEELRRXXXXXXXXXXXXXXX 138

Query: 123 ------PREEFQIPSLGTSNFGSESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 182
                  REEFQIPS+G+S+F  E+ RSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR
Sbjct: 139 XXXXXXXREEFQIPSVGSSSFVVETPRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNR 198

Query: 183 ESVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSNWKTRICNKWELTGYCPFGSKCHFA 242
           ESVA           XXXXXXXXXXXXXXXXXX SNWKTRICNKWELTGYCPFGSKCHFA
Sbjct: 199 ESVA---ISLGPGGYXXXXXXXXXXXXXXXXXXXSNWKTRICNKWELTGYCPFGSKCHFA 258

Query: 243 HGAAELHRYGGGLMETETRDSSSAPPDLKQ--GVLPKAPGDTLVASVPSLPHSDVYHIVV 295
           HG+ ELHRYGGGL+ET+ RD++S P + KQ  GV PKAP DTLVASVPS+PHSDVYH+ V
Sbjct: 259 HGSTELHRYGGGLVETDARDATSVPTETKQQGGVPPKAPADTLVASVPSVPHSDVYHMGV 318

The following BLAST results are available for this feature:

BLAST of Carg24529 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963759.1	1.8e-144	87.46	zinc finger CCCH domain-containing protein 12 isoform X2 [Cucurbita moschata]	[more]
XP_022963758.1	2.3e-144	87.20	zinc finger CCCH domain-containing protein 12 isoform X1 [Cucurbita moschata]	[more]
XP_022963761.1	2.3e-144	87.20	zinc finger CCCH domain-containing protein 12 isoform X4 [Cucurbita moschata]	[more]
XP_023511668.1	5.8e-143	86.94	zinc finger CCCH domain-containing protein 12 isoform X2 [Cucurbita pepo subsp. ...	[more]
XP_023511670.1	7.5e-143	86.69	zinc finger CCCH domain-containing protein 12 isoform X4 [Cucurbita pepo subsp. ...	[more]

BLAST of Carg24529 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32360.1	6.5e-64	49.19	Zinc finger (CCCH-type) family protein	[more]
AT2G35430.1	1.7e-35	38.24	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G19360.1	1.5e-20	30.70	Zinc finger (CCCH-type) family protein	[more]
AT1G68200.1	3.6e-06	62.07	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G12130.1	1.4e-05	55.56	KH domain-containing protein / zinc finger (CCCH type) family protein	[more]

BLAST of Carg24529 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84UQ3\|C3H56_ORYSJ	1.1e-68	58.82	Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q9LQM3\|C3H12_ARATH	1.2e-62	49.19	Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q5PP65\|C3H28_ARATH	3.0e-34	38.24	Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9LT81\|C3H39_ARATH	2.7e-19	30.70	Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q7F8R0\|C3H14_ORYSJ	7.5e-09	29.51	Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg24529 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQH8\|A0A1S3CQH8_CUCME	1.1e-137	83.88	zinc finger CCCH domain-containing protein 12 isoform X2 OS=Cucumis melo OX=3656...	[more]
tr\|A0A1S3CQ64\|A0A1S3CQ64_CUCME	1.4e-137	83.63	zinc finger CCCH domain-containing protein 12 isoform X1 OS=Cucumis melo OX=3656...	[more]
tr\|A0A0A0LK26\|A0A0A0LK26_CUCSA	1.4e-137	83.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901160 PE=4 SV=1	[more]
tr\|A0A1S3CRN1\|A0A1S3CRN1_CUCME	3.8e-127	80.06	zinc finger CCCH domain-containing protein 12 isoform X3 OS=Cucumis melo OX=3656...	[more]
tr\|A0A2P5BGV1\|A0A2P5BGV1_PARAD	5.0e-111	68.64	Zinc finger, CCCH-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_240030 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036855	Znf_CCCH_sf
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24529-RA	Carg24529-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 106..133 e-value: 0.086 score: 22.0 coord: 174..201 e-value: 5.2E-9 score: 45.9
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 175..200 e-value: 5.2E-11 score: 42.1
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 174..202 score: 15.422
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 106..134 score: 14.098
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 168..206 e-value: 3.7E-15 score: 57.1
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 100..149 e-value: 3.1E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..233
None	No IPR available	PANTHER	PTHR12547:SF82	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-RELATED	coord: 9..84
None	No IPR available	PANTHER	PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	coord: 9..84 coord: 98..294
None	No IPR available	PANTHER	PTHR12547:SF82	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-RELATED	coord: 98..294
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 172..205
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 105..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24529	Csa3G901160	Cucumber (Chinese Long) v2	carcuB0983
Carg24529	MELO3C003423	Melon (DHL92) v3.5.1	carmeB0949
Carg24529	CSPI03G46570	Wild cucumber (PI 183967)	carcpiB1006
Carg24529	Cucsa.312990	Cucumber (Gy14) v1	carcgyB1087
Carg24529	CmaCh19G002290	Cucurbita maxima (Rimu)	carcmaB1339
Carg24529	CmaCh02G016210	Cucurbita maxima (Rimu)	carcmaB1340
Carg24529	CmoCh02G016660	Cucurbita moschata (Rifu)	carcmoB1302
Carg24529	CmoCh19G002430	Cucurbita moschata (Rifu)	carcmoB1301
Carg24529	LsiUNG000280	Bottle gourd (USVL1VR-Ls)	carlsiB887
Carg24529	Cp4.1LG05g00270	Cucurbita pepo (Zucchini)	carcpeB1346
Carg24529	Cp4.1LG15g02030	Cucurbita pepo (Zucchini)	carcpeB1344
Carg24529	CsGy3G044020	Cucumber (Gy14) v2	carcgybB0956
Carg24529	MELO3C003423.2	Melon (DHL92) v3.6.1	carmedB0955
Carg24529	CsaV3_3G049030	Cucumber (Chinese Long) v3	carcucB1011
Carg24529	Bhi05G000314	Wax gourd	carwgoB1139

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24529	Carg08847	Silver-seed gourd	carcarB612

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24529	Silver-seed gourd	carcarB487
Carg24529	Cucumber (Gy14) v2	carcgybB0957
Carg24529	Cucumber (Gy14) v1	carcgyB1088
Carg24529	Cucurbita maxima (Rimu)	carcmaB1338
Carg24529	Cucurbita moschata (Rifu)	carcmoB1300
Carg24529	Cucurbita pepo (Zucchini)	carcpeB1343
Carg24529	Wild cucumber (PI 183967)	carcpiB1007
Carg24529	Cucumber (Chinese Long) v2	carcuB0984
Carg24529	Cucumber (Chinese Long) v3	carcucB1012
Carg24529	Bottle gourd (USVL1VR-Ls)	carlsiB889
Carg24529	Melon (DHL92) v3.5.1	carmeB0950
Carg24529	Melon (DHL92) v3.6.1	carmedB0956
Carg24529	Watermelon (Charleston Gray)	carwcgB0948
Carg24529	Watermelon (Charleston Gray)	carwcgB0949
Carg24529	Watermelon (97103) v1	carwmB0974
Carg24529	Watermelon (97103) v1	carwmB0976
Carg24529	Watermelon (97103) v2	carwmbB1023
Carg24529	Watermelon (97103) v2	carwmbB1025