Carg24428 (gene) Silver-seed gourd

Overview
NameCarg24428
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S8
LocationCucurbita_argyrosperma_scaffold_353 : 20490 .. 22688 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAACCTCACTCCTAGTGCCTTCTGCGGAGCGTCCATACTTGTCTCCGCCGTCCGCCGATCGGCTGCTGCCGTCCCAGTGAGTATTTTCCCTCATCTTCTGTACTTAATGCACATCTCTGTCTCGTTGATGCTTGTCTCTTTTGCCATTCTCTTTCTATGTTTCACGTTTGCCTTTGAAAGTTTAGGTTTAGGGTTTGAGCGGTTTCTGTCATTTTTTGTGATAGGTTGGATCAGGAACCTTAGAACTTCTCTTTGCGGAGGAGCTCTCGATTCGTCAAGATGGGTAAGTCATATGCGGACTTTTAGATTGTTCTACACATCTCCATTTGTGTGCTTGTTTTTCTTCTTTGTAATCTGGGAGAGTTTTGTGTACAGGTATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGCGAAAGTAACTTTCTCTGCTTGTATTTAGTTGTGTGCAATTAGATTAATCAGTTTTTACTCCATTTCACCAAATTAGTTGCTGATCGGCATTCAAAAGATTTCATGTCTCTCTACATTTAATTTTTTGGTTTTCAGTATACAATGCTAGCTTTGTGATCTTAGCTGTAACAATGCCTTTTTAATTGGATGTTAGTGACATTATTATCAAGGATTTACCGTTTGTTTCCTCTTGCAGTGTATATTTCAAGAACTTTAGTTAATCTGCGTTAGATACGTCATCTTCTCTGATAGATTAACGTTTTTTTTTTTCTAAAAATGTTATGAGTAGCTATAATATGCTTCACATTTGATGCTTGGCTGAACGGAAAACTGTAATTTCTCTTACTGACATAGCAATTTAGTCTTTTCCAGTAGTTTTTTTAAGGTGCAGCTCAAGTTTACTAATTTTTCATGTGGAAGTAGAAATATAACATTCTTTACCTGTGTTTTCGAGGTTTTGATTACTTTCTAGTAAAGGGAGGATACAATTTTCATGTGCTGTGTGTTATTTTTCATGTTCTCACACGATATCATTTCTTTGTATAGGTATGAGCTTGGAAGGCAACCTGCCAACACTAAGATATCCAGTGACAAGTCAATCCGGAGGATTAGAGTTCGTGGGGGTAATGTGAAGTGGCGTGCTTTTAGGCTTGATACTGGTAATTACTCATGGGGTAGTGAGGCCGTGACTAGGAAGACCCGTATTCTTGATGTGGTGTACAATGCATCGAACAATGAGCTTGTTCGTACTCAAACTTTGGTGAAGAGTGCCATTGTTCAGGTTGATGCTGCACCATTTAAGCAATGGTATCTTCAACACTATGGTGTGGATATTGGAAGGAAGAAGAAGACCTCAGCACCTGCCAAGAAGGAAGAGGTAGAGCAAGCTTGTTCTAAGTTCGATTGTTTGGTTTTGTTCTTGAAATTTCAAATATGAGGACAATGTTAATGGCATTCTAGCATGATCCATAAGACACCCTATTTTTTAATGGTTGATAGGAAGGTGAGGCTGCTGCTGCTGCGGAGGAGTTGAAGAAGAGTAACCACGTTCAGCGCAAGTTGGAGAAACGTCAACAGGATCGTAAGCTCGACCCACATATTGAGGAGCAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGACCAGGTCAATGTGGCCGAGCAGATGGGTAAGCACGATCATTGAAGGATTTTTGTTCTTTTGAACTTGTCTTGGCAGATGTTGTAGGGTTTTTTAGTAGTTTGGCTGATGTTTTACGAATTTTTTGCAGGTATATCTTGGAGGGGAAAGAACTCGAGTTCTACATGAAGAAGCTCCAGAGAAAGAAGGGAAAAGGTGCTGGTGCTGCATAAGTTTTGTCGTTGAGATATGTTGTGGCCGTGTTTCATTTTCTATGATTCTATCTGCCTTTTTTGTCTTCTGAAGATGATGATTTGCAGCTAAGAGGATAGAATTATTTATGAACTTCAATTTTGCTGGTATTAGTTGTTTAATTACAATACTTTATTTGAGTCTGTTTCGTGATTATAACAGTTCGTTTATTAGCCTCAGAATTTTCAAATGCCCCAACCTATTTCTTTGCCTACTGATTTAATTTGGTCTAGTTGAGTTAATCTTGTTCTTTTTTGGCTTGCATTCTGATTATTTCTTTCCTTAGAATAATCTAGCCATCAATTATTTCTTCCTGGTTAATAATATAATAATTTA

mRNA sequence

TGAAACCTCACTCCTAGTGCCTTCTGCGGAGCGTCCATACTTGTCTCCGCCGTCCGCCGATCGGCTGCTGCCGTCCCAGTTGGATCAGGAACCTTAGAACTTCTCTTTGCGGAGGAGCTCTCGATTCGTCAAGATGGGTATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGCGAAAGTATGAGCTTGGAAGGCAACCTGCCAACACTAAGATATCCAGTGACAAGTCAATCCGGAGGATTAGAGTTCGTGGGGGTAATGTGAAGTGGCGTGCTTTTAGGCTTGATACTGGTAATTACTCATGGGGTAGTGAGGCCGTGACTAGGAAGACCCGTATTCTTGATGTGGTGTACAATGCATCGAACAATGAGCTTGTTCGTACTCAAACTTTGGTGAAGAGTGCCATTGTTCAGGTTGATGCTGCACCATTTAAGCAATGGTATCTTCAACACTATGGTGTGGATATTGGAAGGAAGAAGAAGACCTCAGCACCTGCCAAGAAGGAAGAGGAAGGTGAGGCTGCTGCTGCTGCGGAGGAGTTGAAGAAGAGTAACCACGTTCAGCGCAAGTTGGAGAAACGTCAACAGGATCGTAAGCTCGACCCACATATTGAGGAGCAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGACCAGGTCAATGTGGCCGAGCAGATGGGTATATCTTGGAGGGGAAAGAACTCGAGTTCTACATGAAGAAGCTCCAGAGAAAGAAGGGAAAAGGTGCTGGTGCTGCATAAGTTTTGTCGTTGAGATATGTTGTGGCCGTGTTTCATTTTCTATGATTCTATCTGCCTTTTTTGTCTTCTGAAGATGATGATTTGCAGCTAAGAGGATAGAATTATTTATGAACTTCAATTTTGCTGGTATTAGTTGTTTAATTACAATACTTTATTTGAGTCTGTTTCGTGATTATAACAGTTCGTTTATTAGCCTCAGAATTTTCAAATGCCCCAACCTATTTCTTTGCCTACTGATTTAATTTGGTCTAGTTGAGTTAATCTTGTTCTTTTTTGGCTTGCATTCTGATTATTTCTTTCCTTAGAATAATCTAGCCATCAATTATTTCTTCCTGGTTAATAATATAATAATTTA

Coding sequence (CDS)

ATGGGTATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCTTGGAGGAAGAAGCGAAAGTATGAGCTTGGAAGGCAACCTGCCAACACTAAGATATCCAGTGACAAGTCAATCCGGAGGATTAGAGTTCGTGGGGGTAATGTGAAGTGGCGTGCTTTTAGGCTTGATACTGGTAATTACTCATGGGGTAGTGAGGCCGTGACTAGGAAGACCCGTATTCTTGATGTGGTGTACAATGCATCGAACAATGAGCTTGTTCGTACTCAAACTTTGGTGAAGAGTGCCATTGTTCAGGTTGATGCTGCACCATTTAAGCAATGGTATCTTCAACACTATGGTGTGGATATTGGAAGGAAGAAGAAGACCTCAGCACCTGCCAAGAAGGAAGAGGAAGGTGAGGCTGCTGCTGCTGCGGAGGAGTTGAAGAAGAGTAACCACGTTCAGCGCAAGTTGGAGAAACGTCAACAGGATCGTAAGCTCGACCCACATATTGAGGAGCAATTCAGCAGTGGTCGTTTGATGGCTTGTATCTCATCAAGACCAGGTCAATGTGGCCGAGCAGATGGGTATATCTTGGAGGGGAAAGAACTCGAGTTCTACATGAAGAAGCTCCAGAGAAAGAAGGGAAAAGGTGCTGGTGCTGCATAA

Protein sequence

MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTSAPAKKEEEGEAAAAAEELKKSNHVQRKLEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Homology
[Close]
BLAST of Carg24428 vs. NCBI nr
Match: XP_022957602.1 (40S ribosomal protein S8-like [Cucurbita moschata] >XP_022989999.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_023515358.1 40S ribosomal protein S8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 2.5e-98
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM
Sbjct: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 221

[Close]
BLAST of Carg24428 vs. NCBI nr
Match: XP_022929761.1 (40S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal protein S8-like [Cucurbita moschata] >XP_022997461.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_022997462.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_023547179.1 40S ribosomal protein S8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361.3 bits (926), Expect = 2.3e-96
Identity = 188/221 (85.07%), Postives = 190/221 (85.97%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR                               K+EKRQQDRKLDPHIEEQFSSGRLM
Sbjct: 121 DIGR--KKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLM 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]
BLAST of Carg24428 vs. NCBI nr
Match: XP_008451649.1 (PREDICTED: 40S ribosomal protein S8-like [Cucumis melo])

HSP 1 Score: 360.1 bits (923), Expect = 5.2e-96
Identity = 195/221 (88.24%), Postives = 197/221 (89.14%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR       XXXXXXXX                K+EKRQQDRKLDPHIEEQFSSGRLM
Sbjct: 121 DIGR--KKKTSXXXXXXXXGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLM 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]
BLAST of Carg24428 vs. NCBI nr
Match: XP_022937545.1 (40S ribosomal protein S8-like [Cucurbita moschata])

HSP 1 Score: 360.1 bits (923), Expect = 5.2e-96
Identity = 213/221 (96.38%), Postives = 216/221 (97.74%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR  XXXXXXXXXXXXXXXXXXXXXXXXXX   K+EKRQQDRKLDPHIEEQFSSGRLM
Sbjct: 121 DIGR--XXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLM 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 219

[Close]
BLAST of Carg24428 vs. NCBI nr
Match: XP_022969662.1 (40S ribosomal protein S8-like [Cucurbita maxima])

HSP 1 Score: 360.1 bits (923), Expect = 5.2e-96
Identity = 212/221 (95.93%), Postives = 215/221 (97.29%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR  XXXXXXXXXXXXXXXXXXXXXXXXX    K+EKRQQDRKLDPHIEEQFSSGRLM
Sbjct: 121 DIGR--XXXXXXXXXXXXXXXXXXXXXXXXXHVQRKIEKRQQDRKLDPHIEEQFSSGRLM 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 219

[Close]
BLAST of Carg24428 vs. TAIR10
Match: AT5G59240.1 (Ribosomal protein S8e family protein)

HSP 1 Score: 325.9 bits (834), Expect = 2.0e-89
Identity = 169/221 (76.47%), Postives = 181/221 (81.90%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR                               KLE RQ+ R LD H+EEQFSSGRL+
Sbjct: 121 DIGR-----------KKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLL 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACI+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 181 ACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

[Close]
BLAST of Carg24428 vs. TAIR10
Match: AT5G20290.1 (Ribosomal protein S8e family protein)

HSP 1 Score: 318.2 bits (814), Expect = 4.1e-87
Identity = 192/221 (86.88%), Postives = 209/221 (94.57%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEK---RQQDRKLDPHIEEQFSSG 180
           ++GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L K   RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 219
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

[Close]
BLAST of Carg24428 vs. Swiss-Prot
Match: sp|P49199|RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 342.4 bits (877), Expect = 3.7e-93
Identity = 175/220 (79.55%), Postives = 182/220 (82.73%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTK+SS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR                               KLEKRQQ R LD HIEEQF SGRL+
Sbjct: 121 DIGRKKKAPAAKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLL 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 221
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA A
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220

[Close]
BLAST of Carg24428 vs. Swiss-Prot
Match: sp|Q08069|RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 334.7 bits (857), Expect = 7.7e-91
Identity = 173/221 (78.28%), Postives = 182/221 (82.35%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTK+SS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRL 180
           DIGR                                KLEKR++ R LDPHIEEQF SGRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 221
           +ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK A A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221

[Close]
BLAST of Carg24428 vs. Swiss-Prot
Match: sp|O81361|RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 7.7e-91
Identity = 188/221 (85.07%), Postives = 198/221 (89.59%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           +IGR       XXXXXXXXXXXXXXX         KLEKRQQ R LD HIEEQF  G+L+
Sbjct: 121 EIGR-KKKTAAXXXXXXXXXXXXXXXAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLL 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCG+ADG ILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGAA 220

[Close]
BLAST of Carg24428 vs. Swiss-Prot
Match: sp|Q9FIF3|RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.6e-88
Identity = 169/221 (76.47%), Postives = 181/221 (81.90%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR                               KLE RQ+ R LD H+EEQFSSGRL+
Sbjct: 121 DIGR-----------KKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLL 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACI+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGAA
Sbjct: 181 ACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

[Close]
BLAST of Carg24428 vs. Swiss-Prot
Match: sp|Q93VG5|RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 7.4e-86
Identity = 192/221 (86.88%), Postives = 209/221 (94.57%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEK---RQQDRKLDPHIEEQFSSG 180
           ++GRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L K   RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 219
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

[Close]
BLAST of Carg24428 vs. TrEMBL
Match: tr|A0A1S3BRZ4|A0A1S3BRZ4_CUCME (40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103492879 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 3.4e-96
Identity = 195/221 (88.24%), Postives = 197/221 (89.14%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR       XXXXXXXX                K+EKRQQDRKLDPHIEEQFSSGRLM
Sbjct: 121 DIGR--KKKTSXXXXXXXXGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLM 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]
BLAST of Carg24428 vs. TrEMBL
Match: tr|A0A0A0LJA0|A0A0A0LJA0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_2G059750 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 5.9e-96
Identity = 186/221 (84.16%), Postives = 189/221 (85.52%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR                               K+EKRQQDRKLDPHIEEQFSSGRLM
Sbjct: 121 DIGR--KKKTSASVKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLM 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]
BLAST of Carg24428 vs. TrEMBL
Match: tr|A0A1S3CRZ5|A0A1S3CRZ5_CUCME (40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103504075 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 7.7e-96
Identity = 214/221 (96.83%), Postives = 216/221 (97.74%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR XXXXXXXXXXXXXXXXXXXXXXXXXXX   KLEKRQ+ RKLDPHIEEQFSSGRLM
Sbjct: 121 DIGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKLEKRQEGRKLDPHIEEQFSSGRLM 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220

[Close]
BLAST of Carg24428 vs. TrEMBL
Match: tr|A0A0A0KFT0|A0A0A0KFT0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_6G382970 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 3.8e-95
Identity = 213/222 (95.95%), Postives = 217/222 (97.75%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RKTRILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRL 180
           DIGR XXXXXXXXXXXXXXXXXXXXXXXXXXXX   KLEKRQ+ RKLDPHIEEQFSSGRL
Sbjct: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKLEKRQEGRKLDPHIEEQFSSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222

[Close]
BLAST of Carg24428 vs. TrEMBL
Match: tr|A0A1R3KEG0|A0A1R3KEG0_COCAP (40S ribosomal protein S8 OS=Corchorus capsularis OX=210143 GN=CCACVL1_01887 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 9.4e-94
Identity = 181/221 (81.90%), Postives = 188/221 (85.07%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR                               K+EKRQ+DRKLDPHIEEQF SGRL+
Sbjct: 121 DIGR--KKKTAAKKDATEVGEAAAEETKKSNHVLRKIEKRQKDRKLDPHIEEQFGSGRLL 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

The following BLAST results are available for this feature:
BLAST of Carg24428 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957602.12.5e-98100.0040S ribosomal protein S8-like [Cucurbita moschata] >XP_022989999.1 40S ribosomal... [more]
XP_022929761.12.3e-9685.0740S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal... [more]
XP_008451649.15.2e-9688.24PREDICTED: 40S ribosomal protein S8-like [Cucumis melo][more]
XP_022937545.15.2e-9696.3840S ribosomal protein S8-like [Cucurbita moschata][more]
XP_022969662.15.2e-9695.9340S ribosomal protein S8-like [Cucurbita maxima][more]
BLAST of Carg24428 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59240.12.0e-8976.47Ribosomal protein S8e family protein[more]
AT5G20290.14.1e-8786.88Ribosomal protein S8e family protein[more]
BLAST of Carg24428 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49199|RS8_ORYSJ3.7e-9379.5540S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 S... [more]
sp|Q08069|RS8_MAIZE7.7e-9178.2840S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2[more]
sp|O81361|RS8_PRUAR7.7e-9185.0740S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1[more]
sp|Q9FIF3|RS82_ARATH3.6e-8876.4740S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1[more]
sp|Q93VG5|RS81_ARATH7.4e-8686.8840S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1[more]
BLAST of Carg24428 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BRZ4|A0A1S3BRZ4_CUCME3.4e-9688.2440S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103492879 PE=3 SV=1[more]
tr|A0A0A0LJA0|A0A0A0LJA0_CUCSA5.9e-9684.1640S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_2G059750 PE=3 SV=1[more]
tr|A0A1S3CRZ5|A0A1S3CRZ5_CUCME7.7e-9696.8340S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103504075 PE=3 SV=1[more]
tr|A0A0A0KFT0|A0A0A0KFT0_CUCSA3.8e-9595.9540S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_6G382970 PE=3 SV=1[more]
tr|A0A1R3KEG0|A0A1R3KEG0_COCAP9.4e-9481.9040S ribosomal protein S8 OS=Corchorus capsularis OX=210143 GN=CCACVL1_01887 PE=3... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR018283Ribosomal_S8e_CS
IPR022309Ribosomal_S8e/biogenesis_NSA2
IPR001047Ribosomal_S8e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24428-RACarg24428-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:1.10.168.20coord: 112..177
e-value: 3.6E-26
score: 93.2
NoneNo IPR availableGENE3DG3DSA:2.40.10.450coord: 32..111
e-value: 3.1E-29
score: 103.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..169
NoneNo IPR availablePANTHERPTHR10394:SF940S RIBOSOMAL PROTEIN S8-2coord: 1..218
NoneNo IPR availableCDDcd11380Ribosomal_S8e_likecoord: 5..198
e-value: 7.27061E-57
score: 178.482
IPR001047Ribosomal protein S8eTIGRFAMTIGR00307TIGR00307coord: 1..200
e-value: 4.1E-47
score: 157.4
IPR001047Ribosomal protein S8ePANTHERPTHR1039440S RIBOSOMAL PROTEIN S8coord: 1..218
IPR022309Ribosomal protein S8e/ribosomal biogenesis NSA2PFAMPF01201Ribosomal_S8ecoord: 1..198
e-value: 1.8E-58
score: 196.5
IPR018283Ribosomal protein S8e, conserved sitePROSITEPS01193RIBOSOMAL_S8Ecoord: 11..30

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24428Cla013924Watermelon (97103) v1carwmB0445
Carg24428Csa6G382970Cucumber (Chinese Long) v2carcuB0478
Carg24428MELO3C010630Melon (DHL92) v3.5.1carmeB0451
Carg24428ClCG08G005850Watermelon (Charleston Gray)carwcgB0438
Carg24428CSPI06G20230Wild cucumber (PI 183967)carcpiB0483
Carg24428CmaCh15G006670Cucurbita maxima (Rimu)carcmaB0620
Carg24428CmaCh04G023730Cucurbita maxima (Rimu)carcmaB0621
Carg24428CmoCh15G006760Cucurbita moschata (Rifu)carcmoB0603
Carg24428CmoCh04G024860Cucurbita moschata (Rifu)carcmoB0604
Carg24428Lsi08G004460Bottle gourd (USVL1VR-Ls)carlsiB407
Carg24428Cp4.1LG01g20590Cucurbita pepo (Zucchini)carcpeB0627
Carg24428Cp4.1LG13g04590Cucurbita pepo (Zucchini)carcpeB0626
Carg24428CsGy6G019710Cucumber (Gy14) v2carcgybB0456
Carg24428MELO3C010630.2Melon (DHL92) v3.6.1carmedB0454
Carg24428CsaV3_6G034270Cucumber (Chinese Long) v3carcucB0480
Carg24428Cla97C08G148600Watermelon (97103) v2carwmbB0469
Carg24428Bhi04G001502Wax gourdcarwgoB0538
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg24428Carg01541Silver-seed gourdcarcarB451
The following block(s) are covering this gene:
GeneOrganismBlock
Carg24428Cucumber (Gy14) v2carcgybB0455
Carg24428Cucurbita maxima (Rimu)carcmaB0619
Carg24428Cucurbita moschata (Rifu)carcmoB0602
Carg24428Cucurbita pepo (Zucchini)carcpeB0628
Carg24428Wild cucumber (PI 183967)carcpiB0482
Carg24428Cucumber (Chinese Long) v2carcuB0477
Carg24428Cucumber (Chinese Long) v3carcucB0479
Carg24428Bottle gourd (USVL1VR-Ls)carlsiB406
Carg24428Melon (DHL92) v3.5.1carmeB0452
Carg24428Melon (DHL92) v3.6.1carmedB0455
Carg24428Watermelon (Charleston Gray)carwcgB0437
Carg24428Watermelon (97103) v1carwmB0446
Carg24428Watermelon (97103) v2carwmbB0468
Carg24428Wax gourdcarwgoB0540