Carg24371 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24371
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S Ribosomal protein
Location	Cucurbita_argyrosperma_scaffold_298 : 237186 .. 242230 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTCGGCGGAGGAGGAGATGGAGGTTTTAGTCCTCGCGCCACCGTAGAAGACATACAGAGACGGCTGCTTCGACCGTCGTCGATTCACTCTCCACCTCCGACGCCGTCAATCTCGATATTCTACTTATTTCTCCATCAATTTCACTAGTAATGTTTTTTAATCTCCTTGAGACCTGAACTTCTAGAATTTCTCATGTTTATTTCCAGGTTTTCTCGCGGCAAAGATGTTCAAGGTCGAAATTCATCGCAGTTCGAGGCGAATGCCATGGGGCTTTATCGTAAACAAGAAGCAAAAGAAGGAGAAACTGCGAGAAGGAAGAGGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCGGTTTCTTCGAAGATCAGTCGTGCGCAGAAGGTTCCTAAGATGAAGGTAAAGAGAGAGGTTAGGGATTTTGAGTGGCCCGTCGCTGAATTGAGGATGTTGATGGATGATTCGACGGTCGGAAAGGGGAAAATTAATATTGTTAATCTCGGTAATGACTCTGATAATCTCACAGAAAATGATGAAGAAGGAGATGTTAAATTCTCTACTCCGTTTCAAAAATTTGAGCAGACTGCGTTGGTACTGTTCGAATTATGAACTGAAATTGAAATATTAACTAACAAATGTAGGAATGTAGAAAACTGGATAGAAATAAAGAAGATCGGAGGCTTGTTTCTGTTTATTTGCATTTTGTAGTCATACAAAGGGCCCTCTCTCGGTCTGAGATGAATTCTTCATCCCAATCTTGAAATCCCCTGGCCATTTAATAACGCACATAATTTGCCTTGCAAAATCTGGAAACGCATTTCTCTACCAGGGACTTCTATCAAAGCACAAAATCCGTGCTGGATTGTAATTATCGGCCGAGAGGACTGATTCGGAGGGATCCGCGAAGATTTGCGGTCAAGTAGAAGGATAGCATGCGACGGCACGCATCTCTGAGACTACCTGTGGCCACGCCCTTTGAAGGTATCAGAAGGCGCAATACTGGTACCTTGCTTTCCCCTTCTGATGCTTCTGGATTGCCATTTTTACATGTTAATGTCATACATTACATGAAGAAGAACAATTATCATTAACATTTTAGCGCTATTTTGATGAACCGATAACATTTTACTGAGTATGATCCTTTAAGAAAATAAACCAAACTTTGTCAAGTAAAATTGAACTGCGCCTTATTGTATGATCATTTTGTTAAGTAATTTTTTAGTTGTCCTAAAGTTATTTGTACTTTGAGAGTTCTGCATTGGCATGAGAGAAAAGATATTCTCGCATGGAAAGATCATTCTTGTATGAGTGTTTAGCATGGTACATTTCCCCCCTTCTTTTCAACTCAGCATAAAAATTCCAGAGAGATCTGTTTTAACTTTCTGGCGGTTTACGACTAAAGTTCTGCTAGAGTTAGGTAAACTGAGGTGGTTAAGACTTATTATATAAAGTTTAATTAATTGTATTACTGTTTTGTTGATAGAACCTAGAAGTATATATAACTTCTATCATCTTTGATCACTGATTGAATAATACTATTGCTCTTTGTGATCATTCTCTGTGAGAATTTGTGAAGTAGAACGGGGATTGAATACCAAAGCATAAAATTTTATTTACTTTTCAAATTATTAGAATAGAAAAGGAGATACTAATTCTGAAACTTAGATGCATTTATCTTAAGAAATTTAAGCTTTTAAGAGGGTAACAACATTCATATGGGTAGTGAGTTATGGTTGGAGTAATACAATAGTTAGTAATTTTAGGATTAGCTAGTCTGATGGTTATGATCTTTTTGCACCTCTTTAGTTTTGGAGAGACATGATTAACTTGGGAGCCATCAATATGATCAGTCTTTAGAGCCGTATACACAGTTTATTCAAATTACTTGATGAACATAACTTAGTCGCATTTCAATTTGTAAAAAACTCTACATGACGGAGGAGCCAAATTAGATTAAAAAAAAAAAAAAAAAAAAAAAAACTCCACGTAGTGACCTTTTTTAATGAATACAAGTCTTGATGAGAATACCACAGAATGCAACAAACTGAAATATGTGATTTTTTTATTCGCTTGATGAGAAGCCTTCGGGAGGGGCCCACTTTGCTTTGTGGTGGATTTGGTAAGTTATTTTTTTTTAAAAAAAAATGTAGTAGTTACGTCAGGTGTCAAGTTTGGTTTTGTAGCATTGTCTGATGGAATCTTTCCAAGAAGTCACTTCTATTTGTATAAAATCAAGTGGCAGGCTCCATAACCTAAGGGTATGCCTTGTTTGACCATAGGTTTACAACTCCCAATAAACATATTAAGTTCAAAGTTTTGATGTCTTGTGTAATGATTAAATGAATAATATTAATTTGTTCCTTTTTATTAAAATTTCTTTGTATATGGAATGTTAAGACATTTGTTGTGGCAATTCAATCTATTACTAGTAAAAGGGATTACTTTACTTTAGGGTGGATTTTGTGTGTTCTTTCTTTTAAATGCTATAGTTACATTAGATATCAAATTTGTATATGCATCGTTGTCTCGTGGAATCTTTCTATAGAGTCATTTCTACATGTACAACACTAAGTATGTACAACACTAAGTGGCAGCATCAGTTCTTTAATCAATGTTTTAGAAGGCTTTTAAGGCTTGTATTTTGGGACTTGCTCAAAGTATGATTCCAACATTTAGCCTCAAGACTTATACCTTCTTTGGACCATAAGAGGCTTATGCCTCCTTGGAAATGCGTTAAGAATCGAGGTCTTTACAACCCATATAATGATTAGAAGAGGCGAAATAAACAAGCTTGTAAAGTAGTTCTTCTTTGGAATCAGATAATGTACGCACCATTGATTTGATATACTAGTTTCCCATACTGCAGGGCTTAAACCGAACAAGAAAGTGAAAGATAAAGGGTAAGAACCATTTATAAAAGACGTGAAAAGGAAAAGGCAAAAGAATTATTCTCTTGATTTGCTCAATCTCTGACCGCTGGTAGTGTATGAGGTGTTAATTTGAGGTCCTTATCATAGTTTATCCGATATTTGTATGATGTTTACTATTCCTTTGATTCTCTATGCTTCTGCTCATCTCTGCTGTTTGCAGGCTACAGGGTGCCACACCATAGATGGATGCTACTGACCTTTTCTTTACTCGGCCACCACGACGGACGAGGAGAGATGTCTGCCCATTGCTGATGGTTGTACTCTGTCCCTGCTATTGGAGAATCATTGGGATACGAGATTTGCTTTGGACTCTCCATCTACCGTAAAACTTCCCTTTTTGTCGACATTTGGAGTTGCATTTACATGAACATGGAGCATGGAATAGACTTCCAAAAAGAAAAAGGTCCCCTCCATTTTCATTGTTTATTTATAAAAAAAAAAATTAATTTGTGGGCGTTAATATTTATCGATTCTAAGGATAAAAACGTCATTTCAGTTTCTTTAGTTTTTTTTTTTTGGGCGATTCTATCGATTTCCTTTTATTATTTTTTTTCTGTTCTTTTCTGTCTGCTTTTTTTCTCTCAGCATCGAATCTGAACTTGGTTTTTATTCTAAACATTATCTTCTCCATGTTAAATTTATCTCAATTCTACCATTTTCTTCCAGTTCATCTTCATATGAATTGACTGAATATGGGTAATTGGATATCTCACTGTTCTCTAGCTTAATGAAGTGACTGAAATTCCAGTTCATAATATGAAAACAGGGAATAGACGTTGCCTGGCCTTCTGTCGAGTTTGTGGGCCTCTGATGTCACTGCAGTACGAAAGTAGTCTCATTGTGGTCTTTTCTATCATCCCTTTTGCCCTGCCAATCAGAAAATGCTCGAAACAAATGGCAACCCTTCTCTCTCTCACTGTCTGTTCTCTAATGATTTGAATTCAATGTTTTTCTTCTTAACATTTTCCTCGCCTGCAGCCACCGTCTTTGGCGTCTCCTAGTATATCAAATCAACCACCTCGGTCTCAGCCAGCGCTTAGGAGGTCCAGCGTATTGATGGCTCAACAGGTCTCTCTCTCTCTCTCTCTGTCTCCGAGTTTCTTTAATTTGTATACTTCTGAATAATGAGCTGAATTTTTTTAAGTTTGAATTGATTTCTAAACCAGGACGACGGGTGGCCTTTGGGATTAAGACTACTAAATGCTAGAGTTGGATTGCTGGAAAACCGGGACTTTTCCGGATCAATCTCCTTCAACACTTTGCCCACTGGATCTCCGATCTCCTTCACGGACTCTTCAGATCTTGATTCTCAGGTATGTCCATAAACTTTATACTGCCTCTTGTTTGTTTGTTTTTTTTTTTTTTTTTTGTAGGAATCACTAATCTACTCAATAGTATAATAGTGTCTGCTTTCCCAAAAGGCCTCACCTTAATGTAGATGTATTACTTATAATAAATGCATCATCATTCCCTAAATTTGAGAATTTGGGATTCCCTCCCAACAATCTCCTTATGTCTGCATTTTTTGTGTTGTAAATGGTCACAATTTGTCTTTTAACTTCTCCCGCTTTGTGTTCCGATTGATTGCAGTCAAGTGGGTCATTCCTCCATGCTAAAAGCATCAGTGGAGGTAGTCTAATAAGCGGTTCTGACATCGTGGAGCTCTCGAGAAGATCATCAAGAGGGGGAAGCACAGAAACCAGCCTAGGAGGATACAGAAAGAACGACTTCAAGTCCAAGCCATGGTTGTTTTCTCTTTGCTGTAAACTAAGCACCGACGCTGTGAGCGTCACCAGAACTCACTCGCTGGCTCACTTTCTGGAAGCGGAAAGGAGGAGAACCGCCGCTAATTGCCGGAGGAACCAGCTGAGAGCAATGATGCAAGGGCGTCCACGTCCCAGTAATTTGTTGGCCAGCTGAAACACTCTCTTTAAGTGAGGTACTTGGGACCCTTCATTTTCTAGTTTGGTTATTTTCGTTTCTTCTCTCTTTTTGTGCATATTCGGATGGAGAGTGTTACTTTGTGGGTTCTGTTCATTTAAATTCGGAATATGAAAATTCAAGTTAATCTAAATGTAGGCCAAACGAGGTAATTGTTAGGTA

mRNA sequence

ATGAAGGTCGGCGGAGGAGGAGATGGAGGTTTTAGTCCTCGCGCCACCGTAGAAGACATACAGAGACGGCTGCTTCGACCGTCGTCGATTCACTCTCCACCTCCGACGCCGTTTTCTCGCGGCAAAGATGTTCAAGGTCGAAATTCATCGCAGTTCGAGGCGAATGCCATGGGGCTTTATCGTAAACAAGAAGCAAAAGAAGGAGAAACTGCGAGAAGGAAGAGGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCGGTTTCTTCGAAGATCAGTCGTGCGCAGAAGGTTCCTAAGATGAAGGTAAAGAGAGAGGTTAGGGATTTTGAGTGGCCCGTCGCTGAATTGAGGATGTTGATGGATGATTCGACGGTCGGAAAGGGGAAAATTAATATTGTTAATCTCGGTAATGACTCTGATAATCTCACAGAAAATGATGAAGAAGGAGATGTTAAATTCTCTACTCCGTTTCAAAAATTTGAGCAGACTGCGTTGAAGGATAGCATGCGACGGCACGCATCTCTGAGACTACCTGTGGCCACGCCCTTTGAAGGTATCAGAAGGCGCAATACTGGTACCTTGCTTTCCCCTTCTGATGCTTCTGGATTGCCATTTTTACATCCACCGTCTTTGGCGTCTCCTAGTATATCAAATCAACCACCTCGGTCTCAGCCAGCGCTTAGGAGGTCCAGCGTATTGATGGCTCAACAGGACGACGGGTGGCCTTTGGGATTAAGACTACTAAATGCTAGAGTTGGATTGCTGGAAAACCGGGACTTTTCCGGATCAATCTCCTTCAACACTTTGCCCACTGGATCTCCGATCTCCTTCACGGACTCTTCAGATCTTGATTCTCAGTCAAGTGGGTCATTCCTCCATGCTAAAAGCATCAGTGGAGGTAGTCTAATAAGCGGTTCTGACATCGTGGAGCTCTCGAGAAGATCATCAAGAGGGGGAAGCACAGAAACCAGCCTAGGAGGATACAGAAAGAACGACTTCAAGTCCAAGCCATGGTTGTTTTCTCTTTGCTGTAAACTAAGCACCGACGCTGTGAGCGTCACCAGAACTCACTCGCTGGCTCACTTTCTGGAAGCGGAAAGGAGGAGAACCGCCGCTAATTGCCGGAGGAACCAGCTGAGAGCAATGATGCAAGGGCGTCCACGTCCCAGTAATTTGTTGGCCAGCTGAAACACTCTCTTTAAGTGAGGTACTTGGGACCCTTCATTTTCTAGTTTGGTTATTTTCGTTTCTTCTCTCTTTTTGTGCATATTCGGATGGAGAGTGTTACTTTGTGGGTTCTGTTCATTTAAATTCGGAATATGAAAATTCAAGTTAATCTAAATGTAGGCCAAACGAGGTAATTGTTAGGTA

Coding sequence (CDS)

ATGAAGGTCGGCGGAGGAGGAGATGGAGGTTTTAGTCCTCGCGCCACCGTAGAAGACATACAGAGACGGCTGCTTCGACCGTCGTCGATTCACTCTCCACCTCCGACGCCGTTTTCTCGCGGCAAAGATGTTCAAGGTCGAAATTCATCGCAGTTCGAGGCGAATGCCATGGGGCTTTATCGTAAACAAGAAGCAAAAGAAGGAGAAACTGCGAGAAGGAAGAGGAAACTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCGGTTTCTTCGAAGATCAGTCGTGCGCAGAAGGTTCCTAAGATGAAGGTAAAGAGAGAGGTTAGGGATTTTGAGTGGCCCGTCGCTGAATTGAGGATGTTGATGGATGATTCGACGGTCGGAAAGGGGAAAATTAATATTGTTAATCTCGGTAATGACTCTGATAATCTCACAGAAAATGATGAAGAAGGAGATGTTAAATTCTCTACTCCGTTTCAAAAATTTGAGCAGACTGCGTTGAAGGATAGCATGCGACGGCACGCATCTCTGAGACTACCTGTGGCCACGCCCTTTGAAGGTATCAGAAGGCGCAATACTGGTACCTTGCTTTCCCCTTCTGATGCTTCTGGATTGCCATTTTTACATCCACCGTCTTTGGCGTCTCCTAGTATATCAAATCAACCACCTCGGTCTCAGCCAGCGCTTAGGAGGTCCAGCGTATTGATGGCTCAACAGGACGACGGGTGGCCTTTGGGATTAAGACTACTAAATGCTAGAGTTGGATTGCTGGAAAACCGGGACTTTTCCGGATCAATCTCCTTCAACACTTTGCCCACTGGATCTCCGATCTCCTTCACGGACTCTTCAGATCTTGATTCTCAGTCAAGTGGGTCATTCCTCCATGCTAAAAGCATCAGTGGAGGTAGTCTAATAAGCGGTTCTGACATCGTGGAGCTCTCGAGAAGATCATCAAGAGGGGGAAGCACAGAAACCAGCCTAGGAGGATACAGAAAGAACGACTTCAAGTCCAAGCCATGGTTGTTTTCTCTTTGCTGTAAACTAAGCACCGACGCTGTGAGCGTCACCAGAACTCACTCGCTGGCTCACTTTCTGGAAGCGGAAAGGAGGAGAACCGCCGCTAATTGCCGGAGGAACCAGCTGAGAGCAATGATGCAAGGGCGTCCACGTCCCAGTAATTTGTTGGCCAGCTGA

Protein sequence

MKVGGGGDGGFSPRATVEDIQRRLLRPSSIHSPPPTPFSRGKDVQGRNSSQFEANAMGLYRKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQKVPKMKVKREVRDFEWPVAELRMLMDDSTVGKGKINIVNLGNDSDNLTENDEEGDVKFSTPFQKFEQTALKDSMRRHASLRLPVATPFEGIRRRNTGTLLSPSDASGLPFLHPPSLASPSISNQPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFNTLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRGGSTETSLGGYRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRRNQLRAMMQGRPRPSNLLAS

Homology

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BLAST of Carg24371 vs. NCBI nr
Match: XP_022963107.1 (uncharacterized protein LOC111463409 [Cucurbita moschata] >XP_022963108.1 uncharacterized protein LOC111463409 [Cucurbita moschata])

HSP 1 Score: 355.9 bits (912), Expect = 1.8e-94
Identity = 186/188 (98.94%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 210 PPSLASPSISNQPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN 269
           PPSLASPSIS+QPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN
Sbjct: 30  PPSLASPSISDQPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN 89

Query: 270 TLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRGGSTETSLGG 329
           TLPTGSPISF DSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRGGSTETSLGG
Sbjct: 90  TLPTGSPISFADSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRGGSTETSLGG 149

Query: 330 YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRRNQLRAMMQGRP 389
           YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRRNQLRAMMQGRP
Sbjct: 150 YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRRNQLRAMMQGRP 209

Query: 390 RPSNLLAS 398
           RPSNLLAS
Sbjct: 210 RPSNLLAS 217

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BLAST of Carg24371 vs. NCBI nr
Match: XP_023518387.1 (uncharacterized protein LOC111781890 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 2.8e-92
Identity = 183/188 (97.34%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 210 PPSLASPSISNQPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN 269
           PP LASPSISNQ PRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN
Sbjct: 30  PPPLASPSISNQTPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN 89

Query: 270 TLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRGGSTETSLGG 329
           TLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSR GSTETSLGG
Sbjct: 90  TLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRVGSTETSLGG 149

Query: 330 YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRRNQLRAMMQGRP 389
           YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTA NCRRNQLRAMMQGRP
Sbjct: 150 YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAGNCRRNQLRAMMQGRP 209

Query: 390 RPSNLLAS 398
           RP+NLLAS
Sbjct: 210 RPNNLLAS 217

[Close]

BLAST of Carg24371 vs. NCBI nr
Match: XP_023518388.1 (uncharacterized protein LOC111781890 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 348.6 bits (893), Expect = 2.8e-92
Identity = 183/188 (97.34%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 210 PPSLASPSISNQPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN 269
           PP LASPSISNQ PRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN
Sbjct: 12  PPPLASPSISNQTPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN 71

Query: 270 TLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRGGSTETSLGG 329
           TLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSR GSTETSLGG
Sbjct: 72  TLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRVGSTETSLGG 131

Query: 330 YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRRNQLRAMMQGRP 389
           YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTA NCRRNQLRAMMQGRP
Sbjct: 132 YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAGNCRRNQLRAMMQGRP 191

Query: 390 RPSNLLAS 398
           RP+NLLAS
Sbjct: 192 RPNNLLAS 199

[Close]

BLAST of Carg24371 vs. NCBI nr
Match: XP_022972785.1 (uncharacterized protein LOC111471292 [Cucurbita maxima] >XP_022972786.1 uncharacterized protein LOC111471292 [Cucurbita maxima])

HSP 1 Score: 340.5 bits (872), Expect = 7.7e-90
Identity = 179/188 (95.21%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 210 PPSLASPSISNQPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN 269
           PP LASPSISN PPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN
Sbjct: 30  PPPLASPSISNHPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFN 89

Query: 270 TLPTGSPISFTDSSDLDSQSSGSFLHAKSISGGSLISGSDIVELSRRSSRGGSTETSLGG 329
           TLPTGSPISFTDSSDLDSQSSGSF HAKSISG SLISGS IVELS RSSR GSTETSLGG
Sbjct: 90  TLPTGSPISFTDSSDLDSQSSGSFFHAKSISGASLISGSGIVELSSRSSRVGSTETSLGG 149

Query: 330 YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRRNQLRAMMQGRP 389
           YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRR+QLRAMMQGRP
Sbjct: 150 YRKNDFKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTAANCRRDQLRAMMQGRP 209

Query: 390 RPSNLLAS 398
           RP+NLLAS
Sbjct: 210 RPNNLLAS 217

[Close]

BLAST of Carg24371 vs. NCBI nr
Match: XP_022962693.1 (uncharacterized protein LOC111463108 [Cucurbita moschata])

HSP 1 Score: 320.9 bits (821), Expect = 6.3e-84
Identity = 163/167 (97.60%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MKVGGGGDGGFSPRATVEDIQRRLLRPSSIHSPPPTPFSRGKDVQGRNSSQFEANAMGLY 60
           M+VGGGGDGGFSPRA+VEDIQRRLLRPSSIHSPPPTPFSRGKDVQGRNSSQFEANAMGLY
Sbjct: 1   MEVGGGGDGGFSPRASVEDIQRRLLRPSSIHSPPPTPFSRGKDVQGRNSSQFEANAMGLY 60

Query: 61  RKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQKVPKMKVKREVRDFEWPVAELRM 120
           RKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQKVPKMKVKREVRDFEWPVAELRM
Sbjct: 61  RKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQKVPKMKVKREVRDFEWPVAELRM 120

Query: 121 LMDDSTVGKGKINIVNLGNDSDNLTENDEEGDVKFSTPFQKFEQTAL 168
           LMDDSTVGKGKIN VNLGNDSDNLTEN+EEGDVKFSTPFQKFEQTAL
Sbjct: 121 LMDDSTVGKGKINTVNLGNDSDNLTENNEEGDVKFSTPFQKFEQTAL 167

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BLAST of Carg24371 vs. TAIR10
Match: AT5G02440.1 (unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-09
Identity = 52/167 (31.14%), Postives = 73/167 (43.71%), Query Frame = 0


Query: 236 MAQQDDGWPLGLRLLNARVGLLEN--------RDFSGSISFNTLPTGSPISFTDSSDLDS 295
           MA Q++GWPLGLR +NAR+G L                                      
Sbjct: 1   MAHQEEGWPLGLRPVNARIGGLTRGTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 296 QSSGSFLHAKSISGGSLISGSDIVELSRRSSRGGSTETSLGGYRKN--DFKS--KPWLFS 355
              GSF   +S + G+LI  S  +ELSRRS+R  + +T      ++  + K+  KPW+FS
Sbjct: 61  XXMGSFFRDRSYTLGNLIGISSFLELSRRSNRTRNDQTGAARNHQHHKNLKTYYKPWIFS 120

Query: 356 LCCKLSTDAVSVT-------------RTHSLAHFLEAERRRTAANCR 378
           +C KLST+A  ++                SL HFL  ERR   +  R
Sbjct: 121 ICSKLSTNATVISHNRIINEENDGRNNVQSLGHFLIMERRAVGSTIR 167

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BLAST of Carg24371 vs. TrEMBL
Match: tr|A0A0A0L270|A0A0A0L270_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.1e-59
Identity = 124/168 (73.81%), Postives = 143/168 (85.12%), Query Frame = 0


Query: 1   MKVGGGGDGGFSPRATVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60
           M+  GGG+GGFS RATVEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60

Query: 61  YRKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQKVPKMKVKREVRDFEWPVAELR 120
              +EAK+GET+ ++RKLEDYLDPVLLSA+SSKISR +K+PK+ VKR+VRDFEW V ELR
Sbjct: 61  SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120

Query: 121 MLMDDSTVGKGKINIVNLGNDSDNLTENDEEGDVKFSTPFQKFEQTAL 168
           M  +D+ VGK KI+ VNLGNDSDNL END +GDVKFSTPFQKFEQ AL
Sbjct: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 168

[Close]

BLAST of Carg24371 vs. TrEMBL
Match: tr|A0A1S4DWX0|A0A1S4DWX0_CUCME (uncharacterized protein LOC103490160 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490160 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.0e-53
Identity = 124/163 (76.07%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 217 SISNQPPRSQPALRRSSVLMAQQDDGWPLGLRLLNARVGLLENRDFSGSISFNTLPTGSP 276
           SISNQPP+SQP       +MAQQDDGWPLGLR+LNARVGLLENRDF GSISFNTLPTGSP
Sbjct: 15  SISNQPPQSQP-------VMAQQDDGWPLGLRMLNARVGLLENRDFPGSISFNTLPTGSP 74

Query: 277 ISFTDSSDLDSQSSGSFLHAKSISGGSLISG--SDIVELSRRSSRGGSTETSLGGYRKND 336
           ISFTDSS LDS+SSGSF H+KS + GSL+ G  S+I+ELSRRSSR GSTE SLG  RK +
Sbjct: 75  ISFTDSSVLDSESSGSFFHSKSTTLGSLLGGSTSNIMELSRRSSREGSTEASLGVDRKIN 134

Query: 337 ----FKSKPWLFSLCCKLSTDAVSVTRTHSLAHFLEAERRRTA 374
               FKSK WLFSLCCKLSTDAV  TRTHSLAHFLE ER+RTA
Sbjct: 135 NYFKFKSKQWLFSLCCKLSTDAVIATRTHSLAHFLELERKRTA 170

[Close]

BLAST of Carg24371 vs. TrEMBL
Match: tr|A0A0A0KX74|A0A0A0KX74_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295490 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 5.1e-50
Identity = 122/173 (70.52%), Postives = 134/173 (77.46%), Query Frame = 0


Query: 236 MAQQDDGWPLGLRLLNARVGLLENRDFSGSISFNTLPTGSPISFTDSSDLDSQSSGSFLH 295
           MAQQDDGWPLGLR+LNARVGLLENRDF GSISFNTLPTGSPISFTDSS LDS+SSGSF H
Sbjct: 1   MAQQDDGWPLGLRMLNARVGLLENRDFPGSISFNTLPTGSPISFTDSSVLDSESSGSFFH 60

Query: 296 AKSISGGSLISG--SDIVELSRRSSRGGSTETSLGGYRK-NDF---KSKPWLFSLCCKLS 355
           +KSI+ GSLI G  S+I+EL+RR SR GSTE SLG  RK N++   KSKPWLFSLCCKLS
Sbjct: 61  SKSITLGSLIGGSTSNIMELTRRPSREGSTEASLGVDRKINNYFKLKSKPWLFSLCCKLS 120

Query: 356 TDAVSVTRTHSLAHFLEAERRRTAANCRRNQLRAMMQGRPRP-----SNLLAS 398
           TDAV  TRTHSLAHFLE ER+RTA          +    PRP     SN+L S
Sbjct: 121 TDAVIATRTHSLAHFLELERKRTA---------TVAAAHPRPIVGRSSNILTS 164

[Close]

BLAST of Carg24371 vs. TrEMBL
Match: tr|A0A1S3BHM2|A0A1S3BHM2_CUCME (uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490160 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 4.3e-49
Identity = 114/176 (64.77%), Postives = 130/176 (73.86%), Query Frame = 0


Query: 1   MKVGGGGDGGFSPRATVEDIQRRLLRPS---------SIHSPPPTPFSRGKDVQGRNSSQ 60
           M+  GGGDGGFSPRATVEDIQRRLLRPS                  FS GK+ Q RNSSQ
Sbjct: 1   MEARGGGDGGFSPRATVEDIQRRLLRPSXXXXXXXXXXXXXXXXXQFSLGKNAQDRNSSQ 60

Query: 61  FEANAMGLYRKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQKVPKMKVKREVRDF 120
           FEAN M L R +     E + ++RKLEDYLDPVLLSA+SSKI+R +K+P++ VKREVRDF
Sbjct: 61  FEANYMRLSRSR-----EISSKERKLEDYLDPVLLSAISSKINRFEKIPRITVKREVRDF 120

Query: 121 EWPVAELRMLMDDSTVGKGKINIVNLGNDSDNLTENDEEGDVKFSTPFQKFEQTAL 168
           EW V ELRM  +D+ VGK KI+ VNLGNDSDNL END +GDVKFSTPFQKFEQ AL
Sbjct: 121 EWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 171

[Close]

BLAST of Carg24371 vs. TrEMBL
Match: tr|A0A2N9IPS1|A0A2N9IPS1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54247 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 7.7e-38
Identity = 99/146 (67.81%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 236 MAQQDDGWPLGLRLLNARVGLLENRDFSGSISFNTLPTGSPISFT-DSSDLDSQSSGSFL 295
           MAQQ++GWPLGLR LNARVGL+ NRD SGSISFNTL TGSP S T  SSDLD++S+GSF 
Sbjct: 1   MAQQEEGWPLGLRPLNARVGLVRNRDLSGSISFNTLLTGSPTSSTISSSDLDTESTGSFF 60

Query: 296 HAKSISGGSLISGSDIVELSRRSSRGGSTETSLGGYRKNDFKSKPWLFSLCCKLSTDAVS 355
           H KSI+ GSLI  S+I+ELSRRS+RG + ET   G  KN  K K WLFSLC KL+TDAV+
Sbjct: 61  HDKSITLGSLIGVSNILELSRRSTRGRTAETLREG--KNQ-KPKHWLFSLCSKLTTDAVN 120

Query: 356 VTRTHSLAHFLEAERRRTAANCRRNQ 381
           V+ T SL HFLEAERR  A+  RRNQ
Sbjct: 121 VSNTPSLGHFLEAERRAAASVYRRNQ 143

The following BLAST results are available for this feature:

BLAST of Carg24371 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963107.1	1.8e-94	98.94	uncharacterized protein LOC111463409 [Cucurbita moschata] >XP_022963108.1 unchar...	[more]
XP_023518387.1	2.8e-92	97.34	uncharacterized protein LOC111781890 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023518388.1	2.8e-92	97.34	uncharacterized protein LOC111781890 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022972785.1	7.7e-90	95.21	uncharacterized protein LOC111471292 [Cucurbita maxima] >XP_022972786.1 uncharac...	[more]
XP_022962693.1	6.3e-84	97.60	uncharacterized protein LOC111463108 [Cucurbita moschata]	[more]

BLAST of Carg24371 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02440.1	3.6e-09	31.14	unknown protein	[more]

BLAST of Carg24371 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24371 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L270\|A0A0A0L270_CUCSA	2.1e-59	73.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1	[more]
tr\|A0A1S4DWX0\|A0A1S4DWX0_CUCME	1.0e-53	76.07	uncharacterized protein LOC103490160 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0KX74\|A0A0A0KX74_CUCSA	5.1e-50	70.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295490 PE=4 SV=1	[more]
tr\|A0A1S3BHM2\|A0A1S3BHM2_CUCME	4.3e-49	64.77	uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2N9IPS1\|A0A2N9IPS1_FAGSY	7.7e-38	67.81	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54247 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24371-RA	Carg24371-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..231
None	No IPR available	PANTHER	PTHR33544	FAMILY NOT NAMED	coord: 236..384
None	No IPR available	PANTHER	PTHR33544:SF1	SUBFAMILY NOT NAMED	coord: 236..384

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24371	Cla017893	Watermelon (97103) v1	carwmB0467
Carg24371	Cla018215	Watermelon (97103) v1	carwmB0468
Carg24371	Csa3G734280	Cucumber (Chinese Long) v2	carcuB0502
Carg24371	Csa4G295490	Cucumber (Chinese Long) v2	carcuB0503
Carg24371	MELO3C003124	Melon (DHL92) v3.5.1	carmeB0477
Carg24371	MELO3C009262	Melon (DHL92) v3.5.1	carmeB0476
Carg24371	ClCG10G021090	Watermelon (Charleston Gray)	carwcgB0457
Carg24371	ClCG04G008240	Watermelon (Charleston Gray)	carwcgB0458
Carg24371	CSPI04G14580	Wild cucumber (PI 183967)	carcpiB0511
Carg24371	Cucsa.066130	Cucumber (Gy14) v1	carcgyB0543
Carg24371	CmaCh06G003010	Cucurbita maxima (Rimu)	carcmaB0658
Carg24371	CmaCh07G009810	Cucurbita maxima (Rimu)	carcmaB0659
Carg24371	CmaCh14G001540	Cucurbita maxima (Rimu)	carcmaB0656
Carg24371	CmoCh14G001440	Cucurbita moschata (Rifu)	carcmoB0638
Carg24371	CmoCh07G010330	Cucurbita moschata (Rifu)	carcmoB0641
Carg24371	Lsi01G014200	Bottle gourd (USVL1VR-Ls)	carlsiB426
Carg24371	Lsi03G021050	Bottle gourd (USVL1VR-Ls)	carlsiB427
Carg24371	Cp4.1LG03g02340	Cucurbita pepo (Zucchini)	carcpeB0663
Carg24371	Cp4.1LG19g04590	Cucurbita pepo (Zucchini)	carcpeB0662
Carg24371	CsGy3G030190	Cucumber (Gy14) v2	carcgybB0479
Carg24371	CsGy4G014060	Cucumber (Gy14) v2	carcgybB0480
Carg24371	MELO3C009262.2	Melon (DHL92) v3.6.1	carmedB0480
Carg24371	MELO3C003124.2	Melon (DHL92) v3.6.1	carmedB0481
Carg24371	CsaV3_4G024920	Cucumber (Chinese Long) v3	carcucB0508
Carg24371	CsaV3_3G034940	Cucumber (Chinese Long) v3	carcucB0507
Carg24371	Cla97C10G204320	Watermelon (97103) v2	carwmbB0494
Carg24371	Cla97C02G046190	Watermelon (97103) v2	carwmbB0495
Carg24371	Cla97C04G074920	Watermelon (97103) v2	carwmbB0496
Carg24371	Bhi10G000559	Wax gourd	carwgoB0574

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24371	Carg20290	Silver-seed gourd	carcarB334
Carg24371	Carg03311	Silver-seed gourd	carcarB356
Carg24371	Carg12552	Silver-seed gourd	carcarB466

The following block(s) are covering this gene:

None