Carg24314 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24314
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide repeat protein
Location	Cucurbita_argyrosperma_scaffold_116 : 247325 .. 250520 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAAAATATGAAAATAAGGCTGAAGTTTTGCCACCAAAATCAACAGCCATGCCCATGGCGTCTCCAACTGCAAGGCCACTGATTCCCCATCTCCTCTTTCCCTCTTCTTCCACAAACCCTAACCCTAACCCCAACAAACCTTCAAAACCCATCTCATCTCCTCGATTACCCACCAGACGTTTGCTTCTCTTCTCCCTCCCCATCGCCACTGCCCTTCTCCTCCCAATTCCGAGCAATCCAATTCAGCCCAGTTCTTGCGACGCTCTGGAAAGATTTGACCCTGTCAGCCGTTCTGAGCGAGAAGCGAGTGCCGCTATTTCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTTGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCAATCAAGCTCTTCTCTACTTCACTCAGGTTTCCACTACTTTTGCGACTTTTATCATATGATTTTAGTTTTCGTGCAAATGTGTTTTCATAGTTGTGCTCATTGATTCGGTTTCCATTACTCTGTTTGAGGACTTTGAATTCCCAAATTGGGAAGATAATGAGTTTATAAGTAAGGAATACTATCTCCACTTACATGAGGCCGTTTGGGGAAACAAAAAAAATAAGGTCACGGAGCTTATGCTCAAAGTGGACAATATCATATCATTTTGGAGAGTCGTGATTCCTATCACGGTATGAGAGTCATGCGTTAACTTAGCCATGTCAATAGCATCCTCAAGTGTCGAACAAAAAAGTAAGCCTCGAAGGTGTAGTCAAAAGTGACTCAAGTGTCGAACAAAGGGTGTACTTTGTTCAAGGGCTCCAAAAGGAGTTGAGCTTTGTTTAAAGGAAGGCTGTTCGAGGACTCCATAGGCTTCTAGGGAGGCTCTATGGTGTACTTCGTAGGAGGAGAAGATTGTTGAGGATTCTTGGAAGAGAAGTCCCACATTGGCTAATTAAGAGAAAGATCATGGGTTTATTATAAGTAGAATATTATCTCCATTGGTACGAGGTGTTTTGGGGAAACTAGAAGCAAAACCATGAAAATTTATGCTCAAAGTGGATAATATCATACCACTGTAGAGGTATATGATTCCTAACCGTTAAGTCTTGATTGGCCTAACCTATATAAACATTGTTCAGCTGCAGTTTAGACATCGTGAAAAATTTAAGTATTAAGAAAAATTAATATGCTCGGGCTGAGGCTTAGTGTCACAGTCGCACTTTTCTTGGCAACGGATTTGACGATTGTGCCGCACTCACTCCCAACACTGAGTGAGTCAAGTCAACTTAAGATCGCGTCGCCTACGGCCAGGTAACATATGCTCAAGCCTTTGGCCCCATTTTGAGAAGAAGGTTTTAGAAAACCGAGACAGAGAGATTTTGAAAGAGAGTTTGAAAGCAATATTGAGAGAAATTGAAAACAATGTTACATGACTACAAGCAAAAGGAAACACAACGGCTTAAATAACATATAACTTTTCAGGTAGGGAGAATTTGACAACTAGTTGCATCCCCCTATATTACATTTTAAGGTGATTCAGGTCTAGTAGGCCTAGATGTGATTTCGCCGAACGGTCGTACAAAATCTAGGTGAGAGGAGCTGACGACTAGTTGCGTCCCCCTATAGTACATTTTGGGGCATTTTATGTCTATCAAGCATAGACATGATTCTACCGAACTGTCCTACATTTAGAAAATTGAATAAGGAAATTATACATCATGAAAGCAGTAAAGTAAAACAATAAAGTGATAAAAAAACAAAGGTTTAGGCATGCCACGGTATGTGGCCATGGGCAACATGACTTGGACAATCTTGGCCGTGACACTTAACATGCATTCAAGTGGGCATGATCAGAATTTGATCGGGTTTGCTGTAAACGAGAAATGAAGAACCTGCCCACCTCTACGCTCTAAGAACCGATATGCCTTGTTTTGAAACTCCTCTCTTAATTGCAATTGAGAATTTCTAACTATGGATTGTGCTTCCACTATGTATAACAAGTCATTCATGACTTGAAACGAGGACTTAACTGAACATCAGAGATTTTTGATTATCCAGATAGAACTGTGAGATCTCACGTCGATAGATGTGTTTTAAAAATTTTGAGGGAAAATCCGAAAGGAAAAGTCCAAAGAGGACGATATCTGTTAGCGGTGGGCTTGAGCTATTACTAGAAGGCTTTAGAATTCTTTCGTTTTGAAGCTCATTTTCAATCTACATCCCTTGTTTTGTTGAGAGAGAGTTAATTAGTCTTTGTTCTTGTGTAATTTCAGGTAATTGATAAATATAAAGATTTTGCCTTCTCGGACTATGCTCGAGTAGGCCGAGCATTCGCCCTGTATGAAATTGGTGACCGAGAAGAAGCAATTGCAGAGATGGAGGATGTTTCCATATCACTGAAGGGATATCCAGGTAACTTGAATAGATTTTCCACAACAGTTTTAGCTAGAGAAATGAACTTTCTCATACAATGAACAAGTGATTGAACATTATGAGAATATGTTATTTAATGATTCTTCACACAAAAGTTGCATCAAATTTATGAAATTTTGAGGCCACAATTGCAACTAAGTTTAAGGTCAAATAGGATGAATTTGAGAGTTCGAGGTAAAAAAAGGATACACATCTCAAAGTTAGTTGTCATGATTGAGGTGTACGATTATGAGACATGGATACTTACCTGACACAGAGACTATGAATGTTGTTCTTAGAAAATCAAGGGCGTGGACATGGAACAATCACGTTTATTAGTATTACATTCTTATATCATTTTTAAATAATGTCTCTCAGGTCCGAGCCATGAGGCTCACCCTGGAGCCCCGGGTATAGGGGACAAAAAAATCAATAATTTATACATTCATTCATATATTTAAAACGAGTTTGATGTATTTCACTCTCAAAATATCGAGTGAAATTCGGAATGCTCTCGAGAGACCAATTATAATACTTGATGAGAAATATTCCTTGGTGTCTCTTCTCTTATAATACTAGCATTGATGTATCAGTATATTATTTTGCAGAAGTGCATGCGGCACTGGCTGCAGCCTTATACGTGGATAAACATGCTCCATTGCTGGCTGAAAACCAATTCACAATAGCAACTTTGCTTGATCCTCATTATGTGGATATCTCGTATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTGATTAGTTCTTTGAAAAATTTCTTAACACTTTCTTAG

mRNA sequence

ATTGAAAATATGAAAATAAGGCTGAAGTTTTGCCACCAAAATCAACAGCCATGCCCATGGCGTCTCCAACTGCAAGGCCACTGATTCCCCATCTCCTCTTTCCCTCTTCTTCCACAAACCCTAACCCTAACCCCAACAAACCTTCAAAACCCATCTCATCTCCTCGATTACCCACCAGACGTTTGCTTCTCTTCTCCCTCCCCATCGCCACTGCCCTTCTCCTCCCAATTCCGAGCAATCCAATTCAGCCCAGTTCTTGCGACGCTCTGGAAAGATTTGACCCTGTCAGCCGTTCTGAGCGAGAAGCGAGTGCCGCTATTTCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTTGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCAATCAAGCTCTTCTCTACTTCACTCAGGTAATTGATAAATATAAAGATTTTGCCTTCTCGGACTATGCTCGAGTAGGCCGAGCATTCGCCCTGTATGAAATTGGTGACCGAGAAGAAGCAATTGCAGAGATGGAGGATGTTTCCATATCACTGAAGGGATATCCAGAAGTGCATGCGGCACTGGCTGCAGCCTTATACGTGGATAAACATGCTCCATTGCTGGCTGAAAACCAATTCACAATAGCAACTTTGCTTGATCCTCATTATGTGGATATCTCGTATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTGATTAGTTCTTTGAAAAATTTCTTAACACTTTCTTAG

Coding sequence (CDS)

ATGCCCATGGCGTCTCCAACTGCAAGGCCACTGATTCCCCATCTCCTCTTTCCCTCTTCTTCCACAAACCCTAACCCTAACCCCAACAAACCTTCAAAACCCATCTCATCTCCTCGATTACCCACCAGACGTTTGCTTCTCTTCTCCCTCCCCATCGCCACTGCCCTTCTCCTCCCAATTCCGAGCAATCCAATTCAGCCCAGTTCTTGCGACGCTCTGGAAAGATTTGACCCTGTCAGCCGTTCTGAGCGAGAAGCGAGTGCCGCTATTTCCCGAAGAGTATCTGAAGCTGTGGAGCTTCTTGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCAATCAAGCTCTTCTCTACTTCACTCAGGTAATTGATAAATATAAAGATTTTGCCTTCTCGGACTATGCTCGAGTAGGCCGAGCATTCGCCCTGTATGAAATTGGTGACCGAGAAGAAGCAATTGCAGAGATGGAGGATGTTTCCATATCACTGAAGGGATATCCAGAAGTGCATGCGGCACTGGCTGCAGCCTTATACGTGGATAAACATGCTCCATTGCTGGCTGAAAACCAATTCACAATAGCAACTTTGCTTGATCCTCATTATGTGGATATCTCGTATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTGATTAGTTCTTTGAAAAATTTCTTAACACTTTCTTAG

Protein sequence

MPMASPTARPLIPHLLFPSSSTNPNPNPNKPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS

Homology

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BLAST of Carg24314 vs. NCBI nr
Match: XP_022932010.1 (uncharacterized protein LOC111438340 [Cucurbita moschata])

HSP 1 Score: 419.9 bits (1078), Expect = 5.7e-114
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MPMASPTARPLIPHLLFPSSSXXXXXXXXXPSKPISSPRLPTRRLLLFSLPIATALLLPI 60
           MPMASPTARPLIPHLLFPSSSXXXXXXXXXPSKPISSPRLPTRRLLLFSLPIATALLLPI
Sbjct: 1   MPMASPTARPLIPHLLFPSSSXXXXXXXXXPSKPISSPRLPTRRLLLFSLPIATALLLPI 60

Query: 61  PSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYF 120
           PSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYF
Sbjct: 61  PSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYF 120

Query: 121 TQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 180
           TQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYV
Sbjct: 121 TQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 180

Query: 181 DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS
Sbjct: 181 DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 229

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BLAST of Carg24314 vs. NCBI nr
Match: XP_023512389.1 (uncharacterized protein LOC111777156 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.7 bits (1049), Expect = 1.3e-110
Identity = 224/229 (97.82%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MPMASPTARPLIPHLLFPSSSXXXXXXXXXPSKPISSPRLPTRRLLLFSLPIATALLLPI 60
           MPMASPTARPLIPHLLFPSSSXXXXXXXXXPSKPIS PRLPTRRLLLFSLPIATALLLPI
Sbjct: 1   MPMASPTARPLIPHLLFPSSSXXXXXXXXXPSKPISFPRLPTRRLLLFSLPIATALLLPI 60

Query: 61  PSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYF 120
           PSNPIQPSSC ALE FDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDF+ ALLYF
Sbjct: 61  PSNPIQPSSCGALESFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFDHALLYF 120

Query: 121 TQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 180
           TQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYV
Sbjct: 121 TQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 180

Query: 181 DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS
Sbjct: 181 DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 229

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BLAST of Carg24314 vs. NCBI nr
Match: XP_022971626.1 (uncharacterized protein LOC111470308 [Cucurbita maxima])

HSP 1 Score: 401.4 bits (1030), Expect = 2.1e-108
Identity = 213/229 (93.01%), Postives = 215/229 (93.89%), Query Frame = 0


Query: 1   MPMASPTARPLIPHLLFPSSSXXXXXXXXXPSKPISSPRLPTRRLLLFSLPIATALLLPI 60
           MPMASPTA PLIPHLLFPSSS         PSKPIS PRLPT+RLLLFSLPIATALLLPI
Sbjct: 1   MPMASPTATPLIPHLLFPSSS--TNPNPNKPSKPISFPRLPTKRLLLFSLPIATALLLPI 60

Query: 61  PSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYF 120
           PSNPIQPSSCDALE FDPVSRSEREASA ISRRVSEAVELLDKGRELQALGDF+QALLYF
Sbjct: 61  PSNPIQPSSCDALESFDPVSRSEREASAVISRRVSEAVELLDKGRELQALGDFDQALLYF 120

Query: 121 TQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 180
           TQVIDKYKDFAFSDYARVGRAFALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYV
Sbjct: 121 TQVIDKYKDFAFSDYARVGRAFALYEIGHREEAIAEMEDVSISLKGYPEVHAALAAALYV 180

Query: 181 DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS
Sbjct: 181 DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 227

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BLAST of Carg24314 vs. NCBI nr
Match: KGN62202.1 (hypothetical protein Csa_2G334530 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 197/234 (84.19%), Postives = 203/234 (86.75%), Query Frame = 0


Query: 3   MASPTARPLIPHLLFPSS----SXXXXXXXXXPSKPISSPR---LPTRRLLLFSLPIATA 62
           M S TAR LIPHLL PSS               SKP+S P    LPTRRLLLFSLPIATA
Sbjct: 40  MGSTTARLLIPHLLLPSSXXXXXNPSTNTRTKSSKPLSFPNHNSLPTRRLLLFSLPIATA 99

Query: 63  LLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQ 122
            LLPIP NPIQPSS  A+E FDPVSRSE++ASAAISRRVSEAVELLDKGRELQALGDFNQ
Sbjct: 100 FLLPIPGNPIQPSSSFAVESFDPVSRSEKDASAAISRRVSEAVELLDKGRELQALGDFNQ 159

Query: 123 ALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALA 182
           ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALA
Sbjct: 160 ALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALA 219

Query: 183 AALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           AALYVDKHA LLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSL++FLTLS
Sbjct: 220 AALYVDKHAALLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS 273

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BLAST of Carg24314 vs. NCBI nr
Match: XP_004147349.2 (PREDICTED: uncharacterized protein LOC101214268 [Cucumis sativus])

HSP 1 Score: 359.0 bits (920), Expect = 1.2e-95
Identity = 197/234 (84.19%), Postives = 203/234 (86.75%), Query Frame = 0


Query: 3   MASPTARPLIPHLLFPSS----SXXXXXXXXXPSKPISSPR---LPTRRLLLFSLPIATA 62
           M S TAR LIPHLL PSS               SKP+S P    LPTRRLLLFSLPIATA
Sbjct: 19  MGSTTARLLIPHLLLPSSXXXXXNPSTNTRTKSSKPLSFPNHNSLPTRRLLLFSLPIATA 78

Query: 63  LLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQ 122
            LLPIP NPIQPSS  A+E FDPVSRSE++ASAAISRRVSEAVELLDKGRELQALGDFNQ
Sbjct: 79  FLLPIPGNPIQPSSSFAVESFDPVSRSEKDASAAISRRVSEAVELLDKGRELQALGDFNQ 138

Query: 123 ALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALA 182
           ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALA
Sbjct: 139 ALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALA 198

Query: 183 AALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           AALYVDKHA LLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSL++FLTLS
Sbjct: 199 AALYVDKHAALLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS 252

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BLAST of Carg24314 vs. TrEMBL
Match: tr|A0A0A0LN32|A0A0A0LN32_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334530 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 7.9e-96
Identity = 197/234 (84.19%), Postives = 203/234 (86.75%), Query Frame = 0


Query: 3   MASPTARPLIPHLLFPSS----SXXXXXXXXXPSKPISSPR---LPTRRLLLFSLPIATA 62
           M S TAR LIPHLL PSS               SKP+S P    LPTRRLLLFSLPIATA
Sbjct: 40  MGSTTARLLIPHLLLPSSXXXXXNPSTNTRTKSSKPLSFPNHNSLPTRRLLLFSLPIATA 99

Query: 63  LLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQ 122
            LLPIP NPIQPSS  A+E FDPVSRSE++ASAAISRRVSEAVELLDKGRELQALGDFNQ
Sbjct: 100 FLLPIPGNPIQPSSSFAVESFDPVSRSEKDASAAISRRVSEAVELLDKGRELQALGDFNQ 159

Query: 123 ALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALA 182
           ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALA
Sbjct: 160 ALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALA 219

Query: 183 AALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           AALYVDKHA LLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSL++FLTLS
Sbjct: 220 AALYVDKHAALLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS 273

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BLAST of Carg24314 vs. TrEMBL
Match: tr|A0A1S3CCZ2|A0A1S3CCZ2_CUCME (uncharacterized protein LOC103499627 OS=Cucumis melo OX=3656 GN=LOC103499627 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 4.5e-83
Identity = 187/217 (86.18%), Postives = 191/217 (88.02%), Query Frame = 0


Query: 3   MASPTARPLIPHLLFPSS----------SXXXXXXXXXPSKPISSPR---LPTRRLLLFS 62
           M S TAR LIPHLLFPSS           XXXXXXXXX SKP+S P    LPTRRLLLFS
Sbjct: 1   MGSTTARLLIPHLLFPSSXXXXXXXXXXXXXXXXXXXXSSKPLSFPNHNSLPTRRLLLFS 60

Query: 63  LPIATALLLPIPSNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQA 122
           LPIATA LLPIP+NPIQPSS  A+E FDPVSRSE+EASAAISRRVSEAVELLDKGRELQA
Sbjct: 61  LPIATAFLLPIPNNPIQPSSSFAVESFDPVSRSEKEASAAISRRVSEAVELLDKGRELQA 120

Query: 123 LGDFNQALLYFTQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPE 182
           LGDFNQALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPE
Sbjct: 121 LGDFNQALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPE 180

Query: 183 VHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDIS 207
           VHAALAAALYVDKHA LLAENQFTIATLLDPHYVDIS
Sbjct: 181 VHAALAAALYVDKHAALLAENQFTIATLLDPHYVDIS 217

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BLAST of Carg24314 vs. TrEMBL
Match: tr|A0A2I4G558|A0A2I4G558_9ROSI (uncharacterized protein LOC109004804 OS=Juglans regia OX=51240 GN=LOC109004804 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 4.0e-79
Identity = 165/228 (72.37%), Postives = 183/228 (80.26%), Query Frame = 0


Query: 12  IPHLLFPSSS-----XXXXXXXXXPSKPISSPRLPTRRLLLFSLPIATALLLP-----IP 71
           I HLL PS S              P KP S   LP RRL L SLP+ T LL P     + 
Sbjct: 8   ISHLLLPSCSSSPRNSSIPNSNAKPLKPNSKTPLPNRRLFLLSLPLPT-LLFPLFDGFVS 67

Query: 72  SNPIQPSSCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYFT 131
           +N IQPSSC AL  FDPVS  EREAS+ I+RRVSEAVELLDKGRELQA GDFNQALLYFT
Sbjct: 68  TNKIQPSSCYALASFDPVSPVEREASSLIARRVSEAVELLDKGRELQAKGDFNQALLYFT 127

Query: 132 QVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVD 191
           QV+++YKDFAFSDYAR+GRA ALYE+GDR+EAIAEMEDVSISLKGYPEVHAALAAALYVD
Sbjct: 128 QVVEQYKDFAFSDYARMGRALALYEVGDRQEAIAEMEDVSISLKGYPEVHAALAAALYVD 187

Query: 192 KHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           KHAPLLAENQFTIATLLDPHY D+SYVKETKHWPPSL+ SL++F++L+
Sbjct: 188 KHAPLLAENQFTIATLLDPHYTDVSYVKETKHWPPSLVISLQHFISLT 234

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BLAST of Carg24314 vs. TrEMBL
Match: tr|M5WH51|M5WH51_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G271700 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.0e-74
Identity = 161/229 (70.31%), Postives = 179/229 (78.17%), Query Frame = 0


Query: 12  IPHLLFPSSSXXXXXXXXXPSKPISSPRLPTRRLLLFSLPIATALLL------PIPSNPI 71
           IPHLL   SS            P S   L +RRL+LF+LP+AT LL        I SN I
Sbjct: 8   IPHLLMTCSSSLAQPPNLKSLNPFSKTPLLSRRLVLFTLPLATFLLPRKGSCGDISSNSI 67

Query: 72  Q----PS-SCDALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYF 131
                PS S  AL  FDP+S SER+AS AISRR+S+A+ELL+KGRELQALGDFNQALL F
Sbjct: 68  DVNSTPSGSSSALSNFDPISASERDASDAISRRISDALELLEKGRELQALGDFNQALLCF 127

Query: 132 TQVIDKYKDFAFSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYV 191
           TQVI+KY DFAFSDYARVGR+  LYE+G+REEAIAEMEDVSISLKGYPEVHAALAAALY 
Sbjct: 128 TQVIEKYDDFAFSDYARVGRSLILYEVGNREEAIAEMEDVSISLKGYPEVHAALAAALYA 187

Query: 192 DKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           DKHAPLLAENQFTIATLLDPHY D+SYVKETKHWPPSL+SSL +F+TLS
Sbjct: 188 DKHAPLLAENQFTIATLLDPHYTDLSYVKETKHWPPSLVSSLYHFITLS 236

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BLAST of Carg24314 vs. TrEMBL
Match: tr|A0A1U8AE11|A0A1U8AE11_NELNU (uncharacterized protein LOC104599565 OS=Nelumbo nucifera OX=4432 GN=LOC104599565 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 6.5e-74
Identity = 151/218 (69.27%), Postives = 177/218 (81.19%), Query Frame = 0


Query: 12  IPHLLFPSSSXXXXXXXXXPSKPISSPRLPTRRLLLFSLPIATALLLPIPSNPIQPSSCD 71
           +P L  P +           +K +S      RRLL+FSLP++T LL+P  S   +P SC 
Sbjct: 11  LPPLTTPKARNTQTLQRADTNKTLSVAPPIRRRLLVFSLPVSTLLLVPSTS---RPRSCS 70

Query: 72  ALERFDPVSRSEREASAAISRRVSEAVELLDKGRELQALGDFNQALLYFTQVIDKYKDFA 131
           AL+ F+PVS +E++AS A+SRR+ EAV+LLDKGRELQA GDFNQAL YFT V+ +YKDFA
Sbjct: 71  ALQSFEPVSPAEKDASNALSRRIFEAVQLLDKGRELQAQGDFNQALEYFTTVVKEYKDFA 130

Query: 132 FSDYARVGRAFALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQ 191
           FS+YARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQ
Sbjct: 131 FSEYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQ 190

Query: 192 FTIATLLDPHYVDISYVKETKHWPPSLISSLKNFLTLS 230
           FTIATLLDPHY D+SYV+E KHWPPSL++SL++FLTLS
Sbjct: 191 FTIATLLDPHYTDLSYVREKKHWPPSLVASLQHFLTLS 225

The following BLAST results are available for this feature:

BLAST of Carg24314 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932010.1	5.7e-114	100.00	uncharacterized protein LOC111438340 [Cucurbita moschata]	[more]
XP_023512389.1	1.3e-110	97.82	uncharacterized protein LOC111777156 [Cucurbita pepo subsp. pepo]	[more]
XP_022971626.1	2.1e-108	93.01	uncharacterized protein LOC111470308 [Cucurbita maxima]	[more]
KGN62202.1	1.2e-95	84.19	hypothetical protein Csa_2G334530 [Cucumis sativus]	[more]
XP_004147349.2	1.2e-95	84.19	PREDICTED: uncharacterized protein LOC101214268 [Cucumis sativus]	[more]

BLAST of Carg24314 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24314 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24314 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LN32\|A0A0A0LN32_CUCSA	7.9e-96	84.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G334530 PE=4 SV=1	[more]
tr\|A0A1S3CCZ2\|A0A1S3CCZ2_CUCME	4.5e-83	86.18	uncharacterized protein LOC103499627 OS=Cucumis melo OX=3656 GN=LOC103499627 PE=...	[more]
tr\|A0A2I4G558\|A0A2I4G558_9ROSI	4.0e-79	72.37	uncharacterized protein LOC109004804 OS=Juglans regia OX=51240 GN=LOC109004804 P...	[more]
tr\|M5WH51\|M5WH51_PRUPE	1.0e-74	70.31	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G271700 PE=4 SV=1	[more]
tr\|A0A1U8AE11\|A0A1U8AE11_NELNU	6.5e-74	69.27	uncharacterized protein LOC104599565 OS=Nelumbo nucifera OX=4432 GN=LOC104599565...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24314-RA	Carg24314-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 68..219 e-value: 7.2E-11 score: 43.9
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 89..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR37910	FAMILY NOT NAMED	coord: 20..229

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24314	Cla007818	Watermelon (97103) v1	carwmB0716
Carg24314	Csa2G334530	Cucumber (Chinese Long) v2	carcuB0738
Carg24314	MELO3C023232	Melon (DHL92) v3.5.1	carmeB0713
Carg24314	ClCG02G000450	Watermelon (Charleston Gray)	carwcgB0694
Carg24314	CmaCh02G006370	Cucurbita maxima (Rimu)	carcmaB1005
Carg24314	CmaCh20G010580	Cucurbita maxima (Rimu)	carcmaB1004
Carg24314	CmoCh20G010660	Cucurbita moschata (Rifu)	carcmoB0977
Carg24314	CmoCh02G006410	Cucurbita moschata (Rifu)	carcmoB0978
Carg24314	Lsi10G007420	Bottle gourd (USVL1VR-Ls)	carlsiB656
Carg24314	Cp4.1LG16g00860	Cucurbita pepo (Zucchini)	carcpeB1010
Carg24314	CsGy2G015810	Cucumber (Gy14) v2	carcgybB0715
Carg24314	MELO3C023232.2	Melon (DHL92) v3.6.1	carmedB0726
Carg24314	CsaV3_2G019410	Cucumber (Chinese Long) v3	carcucB0756
Carg24314	Cla97C02G026700	Watermelon (97103) v2	carwmbB0749
Carg24314	Bhi10G001344	Wax gourd	carwgoB0846

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24314	Carg11704	Silver-seed gourd	carcarB589

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24314	Cucumber (Gy14) v1	carcgyB0806
Carg24314	Cucurbita pepo (Zucchini)	carcpeB1011