Carg24238 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24238
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nicastrin
Location	Cucurbita_argyrosperma_scaffold_191 : 161291 .. 167602 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGACCTATTCACCTTCACCTTCACTCTGCGCAGAGTTGAAATCCCCAAGAACGCTGCGACGGACTGCGATTTGAGAGAAAGAACAGCCAAATCCGCATCCATGTCTTCCCACATTCTTTACCTCCTTCTGTTCGTTAATTCTCTTCGCCTCTCTTCATCAGGTATGTTAAAAGAGAAGGGGCTATCAATTTTTTGTTTCAATGGTTTCTTATTGCTCGTTGAATATGAATGCCGATCAGTCTTGACGTGTTTAAGTAATGTTACTAATGCAATTGGATTACTTCCGATTTCTTATTCTGCATAGTTTATTGGTAGCGGGTACATTGTTTGAAGCAATTAGACGCCGTTTTGCTACTTTATGTTCAATTTTTTTTTTCACCACCGAATGTTTTGTTGTACGTGCTGTGTATGCTTGGATGTTGGTTTTTTTTTTTTTTTTTTTGCCTCCCCTAAATTTTTTATTGCATATACGTAATTCGTTTTTAACCAATGGAGACACTCTGTTTCATACGACATTCCCTTTTGAAGCCTCTCTCCCGAGCTCCCCAAACTCCCTATTAAGAGGCAGAAGGTTGGAAGCACATTTTTAGATGTTGCTGTTCCCGTTGTTTGATTGATAGTTTCAGTAATGCCATCCATGTAATAACTTTTTATTTTATAACATTTGCATAAACTGTTTGAAAAACATCTCGTGTGAGATCCCACGTTGGTTGGAGATCCCAAATTGGTTGGAGAGGAGAACGAAACATTTCTTACAAGGGTGTAGAAACCTCTCCCCAGAAGTTGAATTTTAAAAGCTTGAGGGGAAACCCGGAAGGGAAAGCCCAAAGAGGACAATATATGTTAGCGGTAGGTTTGAGTTGTTACAAATGGTATCAGAGCCAAACATCGAGCGGTGTGTCAGTGAGGATGTTGGGCCTCAAGAGGGGTGAATGGTGAGATTTCACATTGGTTGGAGAGTAGGATGAAGCTTTTCTTATAAGGGTGTGGAAACCTCTCCCGGCTGGGACTCCAAGGGGGGTGGATTGTGAAATCTCACATGGGAGAGTGGAACAAAGTATTCCTTATAAGGGTGTGGAAACCTCTCCCTGCTAGGACCCCAAGGGGGGTGGATTGTGAGATCCCACATCAGTGGGAGAGTGGAACAAAGTATTCCTTATAAGGGTGTGGAAACCTCCCTGTTGGGACCCCAAGGGGGTGGATAGTGAGATCCCACGTTGATTGGAGAGGGAAATGAAACATTCCTTATAAATGTGTGGAAACCTCTCCCTTCTGGGACTCCAAGGGGGGTGGATCATGAGATACCACATCGGTTGGAGAGGGGAATGAAGCGTTCCTTATACAGGTGTGGAAATCTTTCCCTGCTGGGACCCCAAGGGGGTGACTTGTGAGATTCCACAATGGTTGGAGAGCCCTAAGGTTTGGAGACCACATCGGTTGGAGAGGGGAACGAAACATTTCTTATAAACATGTGGAAATCTCTCCCTGCTGGGACCCCACGAGGTTGGATTGTGAAATTCCAGATCAGTTGGAGAGGGGAACAAAGCATTCCTTATAAAGGTGTGGAAGGGACCCCAAGGGGGATGGATTGTGAGATCCCACAATGGTTGGAGAGGCGAACGGAACATTTCTTATAAAGATGTGGAAACCTCTCTGCTAGAACCTAAGGGGGTGAATTGTGAGATCCCACAACAGTTGGAGAGCCCACATCGGCTGGAGAGGGGAACAAAACATTTCAGTCACATGTTTAAAAGAGCTTTTGAAACATTGACTCGGATAAGCTTAGTTGTGATTGGAAGAAGTGGAAAACAAAGAATCTGAAATATATTGCCACAAACATCTTCACTAAAAACATATCTTACATAGAAAGTAGAGAATGAAGAAAACCAGCAAATCTTGAGAAAGGATGCCGAGAGAAGATATAAATTTGATTTTTCAAAGCTGCAAACACAAAGGGCAAAAAGAAGGAGATAAAGCCATGAGTGGAATCTTCTGTTGGAATGGAGGAAAAAATAAAGAAGATTGGAATGGAATAATAATTAAGAAAATCAGTCTCCTTTGGATCTCTCTTACTAAAATCTATCACCACTTGTGATGGCTTTCAGATAAAAAATCCTCAATTGCGCTTTTCTTTGCATAGTTTGTAAAGCTAAGCACCGAACTATTAATCGTTGGTTGATATCATATCAGCTATATGATAGTTTTGACTTAATCTCAGCCTTTTTGATTAGAAACTGGTAAGAGTTTGGTCACCCAAGCAATTGTTAGGGCAGATCTGTTGTGTAATTTAGAGCTAGTACCGACTTCAGGGGTTTGTCCTAACTGAGTTTGAATTCTAAAATAGTTTAAAACCAGCCATGGTCTCATTACCTTGAAGAAGCTGTTTTTGCCACTAAATGTGCAAGAAATTTTGGCCTTTTGAAAGCTTCTCTTTCTTTCACAAAACTTGCTCGACTAGAATTGTGAGATCCCACATCGGTTGGAAAGGAGAACGAAACATTCCTTATAAGAGTGTGGAAACCGCTCTCTAACAGATACGTTTTAAAACTGTGAGGCTGACGGTGATATGCGGGCCGAAACAGACAATATCCGCTAGTGGTGGGCTTGGGCTGTTACAAATGGTATTAGAGCTAGTCACCGGACGATGCGAGGCATTGGTCAGAGTAGGGCTAGACCCTCTCCATAGTAGACACATTTTAAAACCGTGAGGTTGACGACGATACATAATGGGCCAAAACAATATCTGCTAACCGTGACTTCGGGTTATTACAAATGGTTCAAAGCCAGATATTAAGCGGTATGCCAACGAGGATGCTGGCCCTAAAGGGAGTGGATCATGAGATTCCACGTCGGTTGGAGAGGAGAATGAAACATTTCTTATAAAGGTATGGAAACCTCTCCCTAACAAACGCATTTTAAAACTGTAAGGCTGACAGCGATATGTAACGGACCAAAGCAGACAATATCTGCTAGCGGTGGACTTATAATGAGAAGTTTTATATTTGAAGGTATGCATTTGCCTCTCACAATCAAATGAAAATAATATCGGTATTATACTCAAACTTCTTAAAATGGCTCGCTCTCTTCTTTCTCTCTCCAGAAAATTTCTCTCCCCACTATCTTTTCTACCTTGCCCTTCCCCTCCCCACCCATCCAAGCATGACCTACCTCTTCCTCACAATGAATCAAACTTTCAATCGTACACCATAGATCGAAATACCTTCTCCATTGCCATAGATTCAAACCACAGAAGAAGAGAGTATGTCTAACTGAATCAACAATATCCCTTGGAGTACGCTCAACCTGTATAAAATATCGGCCAAGGTACTCGCTAATAGACTCGAACTTGATCTCCCTTACACCATTGGAAAGAGTTAATTGGCCTTCATTGCCAAAAGGCAGCTTGCCAATGTCATATCACAAGGTTGTTGACCATTGTAGATGTACAAAGTGGAAAGGGTTCCTCTTGAAATTAGATGTTAAGAAAGCCTTCTTCAAATTGATTGGGTTTCATTGAATAAAACTCTTTAAATTCACAGGCTTTGATAAAAGATGAAGAAACTGGATCTTTAATTGCATGTCAAATGTTTCTTACTCTATTTTCTATAATGTTAAGCCTTGGGAAAACAAATTAAGCTCAAAGGAGTATTTGTCTTGGATTTGGCTATATATCTTTTGGTCAATAAAATAATATTTGGATTTGCTTGCAAATGCACATGAAAATTTCTTGTTATAAGATGGGTTGGGAGGTTGCTAGGCTGAATTCACCTCCATGGGTGTCCAGTAATTGGGTTTTTTCTAATTACTAGTACGTTCTCATTCTTTTGGATTGAAGCCCGTTTATGCAGTTAGTGGTGGAACTTGAGACACTTTTTGTGGGCATTTTTTTGTATGAACTTATACATTCTTTCATTTTTCTGCTCGATTTCTTATAAATAATTGTTCTTGTTTTATATCACTCGATTTCGTTCTTATTTATTTCTATTTCCATATTGGTGCCCTTTATGCAAGAAAGACATTGAATCACAAAACTGGCTAATGCAGTGTACATATGCTTATAATTTTCAAATGATACCGCATTTCTTTTCTAGGGAAGTAAAGAAGTTACTGGACATTATATACCGTCCCTTCAATAACGCAAAAAATCTTCTATAGACAAATCACATTAAGACTTTTTTTTTTGGAATCTATGAAAAAAAAAAGAAGAAAGAGTATTCACAGCGAAGGCACATACTTATACTAGGCTCTTAAAAAATGTTGTTTACCTTTACCACACTATTTATAGGTGTAAATTGTCCAATATTTTTGCTTCCTATAGTTATACTTCCTCATTATAAATTGGGAAGGTCGGTTGGTGGTTGGTATTTTGTTTTATAGTTTATGATGCATAGAGTAACTACACAATCATGTTGGATGAAAGTTTTTATTTGAACCTATTATTGTAGCAAGATATTGCTTCTGTAGGTTTCATCTTCCAAGAATGACACATGGAACGCCTTGAAGCTTGCTCGAGAGTCACTTCCATTTGAGAACGTAAATGTGAGATTCTACATCGGTTGGAGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAGACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTGGGAGGAACCCCGAAAGGAAAATCCTAAAGAAAGCAATATCTGCTAGGGATGGACTTGAGCGGTTACCATAAAAGTCTCACCAGCTTGTACTACAAATCCAGGGATACCACCATCTTCGTTGTTGGCATTTTTAACAAAGGTTTTCAACAACATACTTGATGATACTATTATTTGCTCTCTAATATTTTTTAAAAAACACAAAATAAGAAACGAAAGTATCTCAATTTATGGTTTGAGACCAGATTATTTGACAAGTTTGTTTGGTCCATACAGAACTCGCAGATATCTGGGTGGTATTAGAAGACTTCGATACAGAACTCGCAGATATCTTGATGATTTTCGTAAGTTGGCTATGTTCTTTTCTTTTCTTCCTTTTCTTCCTTTTCCATTTTTGTTCATTGCAATTGTTGTATAGCTGGTTCTGCCTTTTCTTATTATTTGTGTATCTTTTTAAACCAGATAATTTAAACTCGTCCTCTATTGAAGCAGCTGCTTTGCTTTACTCATCGTTTATCCTTGATGAACCTTCCTTTGCTCCTTATTCTGGTTATGTTCATGACGATTCAAGATTTGTTTGGAATTATTTGGCTGACAGAACATCTATTCCTAAAGAGAATACTAGCTCAGTCTGTTCACAGAATTGTGATGACAAAAGTGAGGTGTGCATTACAGTGGAGACTGGAAAGGGAACTTGTATTATATCTACTACCAGCCTACCAGGTACAGCTACGTGTATTGTTGAACACATGGCATACTTAGATATTGCATCGAAACTAGAGTTAGAAAAATGTAACATTCCGAGCCCACATATATTGTCCTTTTTTAGCTTTTCTTTTCGGACTTCCCCTCAAGGTTTTTAAAACGTGTCTACTAAGGAGAGGTTTCCACACCCTCATGAAGAGTGCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACTCAATCCACAACTCTCTCTGGGCCTAGCGTCATCGCTATTTCATTACCTTCTCTTTTCTCTTACATCGATGTGGGACCCCTTCTTTCGGGTTCCCAGTGTTTTCTGTTTCTGGGACTACCTTCTGTTCCACTCTCTTCGAGGCTCAGTCTCTCTTGACTTGCGTCATTTGTTCTGGTGTTCAGGCGTCTGTATACAATACTTATACGAGTTCCTCTTCATCTTCTACCAAGGCAATAAAAGAACCCCAATTAAACAAATTCAATAATGGTTAAAACTGTAAATGTTCAAACTTATATTGTATATGTTTTTCCTATTGTGGTCTTTATGCGCTCATTCTGCGAGAAGCCTCGGATTCTGTTTCATGGCTGTTTGACTCTCTCCATTTCCCAATCCCGATGCATCTCTCATACTTTCCATATACTCTTAGGTTTGTTTCTTTATTAAACGCCTTTGCACTTATGTAGTTATATCGATCTACTGCACAATACCGGGCTACCTGTAAAAATGGCGTTCCTTGTCATCTCTGCATTTAAATATTCTGTAGTTATTTGTTTGCAGGTTACGATTTCCGCAATTACTCAACAAGATTGGAAGTTTGAATCTGGGGAGGGCTGGGAATGTTGCTGATCTCGTCTCATAACTAGGTTCCCTCATCAGTACCTCGCCACGAGGAGCCTTGTCGATTCTACGATCCGGACGAGAGACATATCTGGAATCACTATCAAGGCTCTCGGTAA

mRNA sequence

ATGAGGGACCTATTCACCTTCACCTTCACTCTGCGCAGAGTTGAAATCCCCAAGAACGCTGCGACGGACTGCGATTTGAGAGAAAGAACAGCCAAATCCGCATCCATGTCTTCCCACATTCTTTACCTCCTTCTGTTCGTTAATTCTCTTCGCCTCTCTTCATCAGAACTCGCAGATATCTGGGTGGTATTAGAAGACTTCGATACAGAACTCGCAGATATCTTGATGATTTTCGTAAATAATTTAAACTCGTCCTCTATTGAAGCAGCTGCTTTGCTTTACTCATCGTTTATCCTTGATGAACCTTCCTTTGCTCCTTATTCTGGTTATGTTCATGACGATTCAAGATTTGTTTGGAATTATTTGGCTGACAGAACATCTATTCCTAAAGAGAATACTAGCTCAGTCTGTTCACAGAATTGTGATGACAAAAGTGAGGTGTGCATTACAGTGGAGACTGGAAAGGGAACTTGTATTATATCTACTACCAGCCTACCAGGTTACGATTTCCGCAATTACTCAACAAGATTGGAAGTTCCCTCATCAGTACCTCGCCACGAGGAGCCTTGTCGATTCTACGATCCGGACGAGAGACATATCTGGAATCACTATCAAGGCTCTCGGTAA

Coding sequence (CDS)

ATGAGGGACCTATTCACCTTCACCTTCACTCTGCGCAGAGTTGAAATCCCCAAGAACGCTGCGACGGACTGCGATTTGAGAGAAAGAACAGCCAAATCCGCATCCATGTCTTCCCACATTCTTTACCTCCTTCTGTTCGTTAATTCTCTTCGCCTCTCTTCATCAGAACTCGCAGATATCTGGGTGGTATTAGAAGACTTCGATACAGAACTCGCAGATATCTTGATGATTTTCGTAAATAATTTAAACTCGTCCTCTATTGAAGCAGCTGCTTTGCTTTACTCATCGTTTATCCTTGATGAACCTTCCTTTGCTCCTTATTCTGGTTATGTTCATGACGATTCAAGATTTGTTTGGAATTATTTGGCTGACAGAACATCTATTCCTAAAGAGAATACTAGCTCAGTCTGTTCACAGAATTGTGATGACAAAAGTGAGGTGTGCATTACAGTGGAGACTGGAAAGGGAACTTGTATTATATCTACTACCAGCCTACCAGGTTACGATTTCCGCAATTACTCAACAAGATTGGAAGTTCCCTCATCAGTACCTCGCCACGAGGAGCCTTGTCGATTCTACGATCCGGACGAGAGACATATCTGGAATCACTATCAAGGCTCTCGGTAA

Protein sequence

MRDLFTFTFTLRRVEIPKNAATDCDLRERTAKSASMSSHILYLLLFVNSLRLSSSELADIWVVLEDFDTELADILMIFVNNLNSSSIEAAALLYSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNCDDKSEVCITVETGKGTCIISTTSLPGYDFRNYSTRLEVPSSVPRHEEPCRFYDPDERHIWNHYQGSR

Homology

[Close]

BLAST of Carg24238 vs. NCBI nr
Match: XP_022934238.1 (nicastrin-like isoform X2 [Cucurbita moschata] >XP_022934239.1 nicastrin-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 80  NNLNSSSIEAAALLYSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQ 139
           +NLNSSSIEAAALLYS FILDE     YSGYVHDDSRFVWN+LADRTSIPKENTSSVCSQ
Sbjct: 29  HNLNSSSIEAAALLYSLFILDERFSTLYSGYVHDDSRFVWNFLADRTSIPKENTSSVCSQ 88

Query: 140 NCDDKSEVCITVETGKGTCIISTTSLPG 168
           NCDDKSEVCI VETGKGTCIISTTSLPG
Sbjct: 89  NCDDKSEVCIRVETGKGTCIISTTSLPG 116

[Close]

BLAST of Carg24238 vs. NCBI nr
Match: XP_022934237.1 (nicastrin-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 80  NNLNSSSIEAAALLYSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQ 139
           +NLNSSSIEAAALLYS FILDE     YSGYVHDDSRFVWN+LADRTSIPKENTSSVCSQ
Sbjct: 36  HNLNSSSIEAAALLYSLFILDERFSTLYSGYVHDDSRFVWNFLADRTSIPKENTSSVCSQ 95

Query: 140 NCDDKSEVCITVETGKGTCIISTTSLPG 168
           NCDDKSEVCI VETGKGTCIISTTSLPG
Sbjct: 96  NCDDKSEVCIRVETGKGTCIISTTSLPG 123

[Close]

BLAST of Carg24238 vs. NCBI nr
Match: XP_022997757.1 (nicastrin [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 7.0e-26
Identity = 78/156 (50.00%), Postives = 98/156 (62.82%), Query Frame = 0


Query: 47  VNSLRLSSSELADIWVVLEDFDTELA-DILMIFVNNLNSSSIEAAALLYSSFILDEPSFA 106
           +N+++L++S + +I   L + D  L+ +++  ++     S I      Y   ILDEPS  
Sbjct: 464 LNAIKLNTSLVEEIIGCLLNCDPGLSCELVKRYI-----SPINVCPNHYVGVILDEPSST 523

Query: 107 PYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNCDDKSEVCITVETGKGTCIISTTS- 166
           PY GYVHD SRFVWN+LADRTSIPKENTSSVCSQNCDDKSEVCI  ETGKGTC++STT  
Sbjct: 524 PYPGYVHDVSRFVWNFLADRTSIPKENTSSVCSQNCDDKSEVCIGAETGKGTCVVSTTRY 583

Query: 167 LPGYDFRNYSTRLEVPSS-----VPRHEEPCRFYDP 196
           +P      YSTRL   S       P   +P    DP
Sbjct: 584 VPA-----YSTRLMFESGSWNVLPPNSSDPMGAVDP 609

[Close]

BLAST of Carg24238 vs. NCBI nr
Match: XP_008457115.1 (PREDICTED: nicastrin isoform X1 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 9.1e-26
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 94  YSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNCDDKSEVCITVET 153
           Y   ILDEPS APY  YVHD SRFVWN+LADRTSIPKENTSSVCSQNCDD+SEVCI  ET
Sbjct: 526 YVGVILDEPSSAPYPDYVHDVSRFVWNFLADRTSIPKENTSSVCSQNCDDRSEVCIGAET 585

Query: 154 GKGTCIISTTS-LPGYDFRNYSTRLEVPS 182
           GKGTC+ISTT  +P      YSTRL+  S
Sbjct: 586 GKGTCVISTTRYIPA-----YSTRLKFES 609

[Close]

BLAST of Carg24238 vs. NCBI nr
Match: XP_008457117.1 (PREDICTED: nicastrin isoform X2 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 9.1e-26
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 94  YSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNCDDKSEVCITVET 153
           Y   ILDEPS APY  YVHD SRFVWN+LADRTSIPKENTSSVCSQNCDD+SEVCI  ET
Sbjct: 502 YVGVILDEPSSAPYPDYVHDVSRFVWNFLADRTSIPKENTSSVCSQNCDDRSEVCIGAET 561

Query: 154 GKGTCIISTTS-LPGYDFRNYSTRLEVPS 182
           GKGTC+ISTT  +P      YSTRL+  S
Sbjct: 562 GKGTCVISTTRYIPA-----YSTRLKFES 585

[Close]

BLAST of Carg24238 vs. TAIR10
Match: AT3G52640.2 (Zn-dependent exopeptidases superfamily protein)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-17
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 94  YSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQN-CDDKSEVCITVE 153
           Y+  IL EPS  PY GYV D SRF+WN+LAD+TS+ K NT+SVCS+  C    EVCI  E
Sbjct: 546 YAGVILGEPSSKPYLGYVGDVSRFLWNFLADKTSVQKGNTTSVCSKGVCSKTDEVCIKAE 605

Query: 154 TGK-GTCIISTTS-LPGYDFR 172
           + K GTC++STT  +P Y  R
Sbjct: 606 SNKEGTCVVSTTRYVPAYSTR 626

[Close]

BLAST of Carg24238 vs. Swiss-Prot
Match: sp|Q8GUM5|NICA_ARATH (Nicastrin OS=Arabidopsis thaliana OX=3702 GN=At3g52640/At3g52650 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-16
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 94  YSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQN-CDDKSEVCITVE 153
           Y+  IL EPS  PY GYV D SRF+WN+LAD+TS+ K NT+SVCS+  C    EVCI  E
Sbjct: 517 YAGVILGEPSSKPYLGYVGDVSRFLWNFLADKTSVQKGNTTSVCSKGVCSKTDEVCIKAE 576

Query: 154 TGK-GTCIISTTS-LPGYDFR 172
           + K GTC++STT  +P Y  R
Sbjct: 577 SNKEGTCVVSTTRYVPAYSTR 597

[Close]

BLAST of Carg24238 vs. TrEMBL
Match: tr|A0A1S3C4C7|A0A1S3C4C7_CUCME (nicastrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496866 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.0e-26
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 94  YSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNCDDKSEVCITVET 153
           Y   ILDEPS APY  YVHD SRFVWN+LADRTSIPKENTSSVCSQNCDD+SEVCI  ET
Sbjct: 526 YVGVILDEPSSAPYPDYVHDVSRFVWNFLADRTSIPKENTSSVCSQNCDDRSEVCIGAET 585

Query: 154 GKGTCIISTTS-LPGYDFRNYSTRLEVPS 182
           GKGTC+ISTT  +P      YSTRL+  S
Sbjct: 586 GKGTCVISTTRYIPA-----YSTRLKFES 609

[Close]

BLAST of Carg24238 vs. TrEMBL
Match: tr|A0A1S3C4S1|A0A1S3C4S1_CUCME (nicastrin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496866 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 6.0e-26
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 94  YSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNCDDKSEVCITVET 153
           Y   ILDEPS APY  YVHD SRFVWN+LADRTSIPKENTSSVCSQNCDD+SEVCI  ET
Sbjct: 502 YVGVILDEPSSAPYPDYVHDVSRFVWNFLADRTSIPKENTSSVCSQNCDDRSEVCIGAET 561

Query: 154 GKGTCIISTTS-LPGYDFRNYSTRLEVPS 182
           GKGTC+ISTT  +P      YSTRL+  S
Sbjct: 562 GKGTCVISTTRYIPA-----YSTRLKFES 585

[Close]

BLAST of Carg24238 vs. TrEMBL
Match: tr|A0A0A0LBN5|A0A0A0LBN5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187260 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.7e-25
Identity = 83/161 (51.55%), Postives = 96/161 (59.63%), Query Frame = 0


Query: 33  SASMSSHILYLLLFVNSLRLSSSELADIWVVLEDFDTELADILMIFVNNLNS-------- 92
           +A + +  LY+L  +N   LSSS L  I V     +T L + L+  + N +         
Sbjct: 87  AALLVARTLYILA-INKKELSSSVLTAIKV-----NTSLVEELIGCLLNCDPGLSCELVK 146

Query: 93  ---SSIEAAALLYSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNC 152
              S        Y   ILDEPS APY  YVHD SRFVWN+LADRTSIPKENTSSVCSQNC
Sbjct: 147 RYISPSSVCPNHYVGVILDEPSSAPYPDYVHDVSRFVWNFLADRTSIPKENTSSVCSQNC 206

Query: 153 DDKSEVCITVETGKGTCIISTTS-LPGYDFRNYSTRLEVPS 182
           DDKSEVCI  ETGKGTC ISTT  +P      YSTRL+  S
Sbjct: 207 DDKSEVCIGAETGKGTCAISTTRYIPA-----YSTRLKFES 236

[Close]

BLAST of Carg24238 vs. TrEMBL
Match: tr|A0A2H5N5B5|A0A2H5N5B5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_278080 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 54/88 (61.36%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 94  YSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNCDDKSEVCITVE- 153
           Y   ++ EPSF PY GYV D SRFVWN+LADRTS PKEN SS CS++C ++ EVCI  E 
Sbjct: 120 YVGVVIGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSRCSKDCTNEDEVCIRAEI 179

Query: 154 TGKGTCIISTTSLPGYDFR---NYSTRL 178
            GKG C+ISTTSL   D R    YSTRL
Sbjct: 180 NGKGVCVISTTSLNVADHRYVPAYSTRL 207

[Close]

BLAST of Carg24238 vs. TrEMBL
Match: tr|A0A1S3TPY0|A0A1S3TPY0_VIGRR (nicastrin OS=Vigna radiata var. radiata OX=3916 GN=LOC106757639 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.6e-18
Identity = 55/109 (50.46%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 94  YSSFILDEPSFAPYSGYVHDDSRFVWNYLADRTSIPKENTSSVCSQNCDDKSEVCITVET 153
           Y   ILDEPS  PY+GY++D  RF+WN+LADRTSIP+E  SS C   C+D+ EVCI  ET
Sbjct: 511 YVGVILDEPSSTPYTGYINDVPRFIWNFLADRTSIPRETNSSGCQHGCNDRDEVCIKAET 570

Query: 154 -GKGTCIISTTS-LPGYDFRNYSTRLEVPSSV-----PRHEEPCRFYDP 196
            GKG C++STT  +P      YSTRL+  S V     P   E     DP
Sbjct: 571 DGKGVCVLSTTRYVPA-----YSTRLKFESGVWNVLPPNSSEKMGVVDP 614

The following BLAST results are available for this feature:

BLAST of Carg24238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934238.1	3.7e-35	89.77	nicastrin-like isoform X2 [Cucurbita moschata] >XP_022934239.1 nicastrin-like is...	[more]
XP_022934237.1	3.7e-35	89.77	nicastrin-like isoform X1 [Cucurbita moschata]	[more]
XP_022997757.1	7.0e-26	50.00	nicastrin [Cucurbita maxima]	[more]
XP_008457115.1	9.1e-26	73.03	PREDICTED: nicastrin isoform X1 [Cucumis melo]	[more]
XP_008457117.1	9.1e-26	73.03	PREDICTED: nicastrin isoform X2 [Cucumis melo]	[more]

BLAST of Carg24238 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52640.2	2.5e-17	55.56	Zn-dependent exopeptidases superfamily protein	[more]

BLAST of Carg24238 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GUM5\|NICA_ARATH	4.5e-16	55.56	Nicastrin OS=Arabidopsis thaliana OX=3702 GN=At3g52640/At3g52650 PE=2 SV=1	[more]

BLAST of Carg24238 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4C7\|A0A1S3C4C7_CUCME	6.0e-26	73.03	nicastrin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496866 PE=4 SV=1	[more]
tr\|A0A1S3C4S1\|A0A1S3C4S1_CUCME	6.0e-26	73.03	nicastrin isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496866 PE=4 SV=1	[more]
tr\|A0A0A0LBN5\|A0A0A0LBN5_CUCSA	8.7e-25	51.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G187260 PE=4 SV=1	[more]
tr\|A0A2H5N5B5\|A0A2H5N5B5_CITUN	7.1e-19	61.36	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_278080 PE=4 SV=1	[more]
tr\|A0A1S3TPY0\|A0A1S3TPY0_VIGRR	4.6e-18	50.46	nicastrin OS=Vigna radiata var. radiata OX=3916 GN=LOC106757639 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24238-RA	Carg24238-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24238	Cla013145	Watermelon (97103) v1	carwmB0166
Carg24238	Csa3G187260	Cucumber (Chinese Long) v2	carcuB0196
Carg24238	MELO3C020322	Melon (DHL92) v3.5.1	carmeB0181
Carg24238	ClCG05G010690	Watermelon (Charleston Gray)	carwcgB0168
Carg24238	CSPI03G17680	Wild cucumber (PI 183967)	carcpiB0203
Carg24238	Cucsa.108520	Cucumber (Gy14) v1	carcgyB0216
Carg24238	CmaCh01G003390	Cucurbita maxima (Rimu)	carcmaB0241
Carg24238	CmaCh14G008670	Cucurbita maxima (Rimu)	carcmaB0240
Carg24238	CmoCh01G003550	Cucurbita moschata (Rifu)	carcmoB0249
Carg24238	Cp4.1LG02g16620	Cucurbita pepo (Zucchini)	carcpeB0256
Carg24238	CsaV3_3G017820	Cucumber (Chinese Long) v3	carcucB0203
Carg24238	Cla97C05G093010	Watermelon (97103) v2	carwmbB0181
Carg24238	Bhi01G001321	Wax gourd	carwgoB0227

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24238	Carg07431	Silver-seed gourd	carcarB213

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24238	Cucumber (Gy14) v2	carcgybB0190
Carg24238	Cucurbita moschata (Rifu)	carcmoB0248
Carg24238	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24238	Bottle gourd (USVL1VR-Ls)	carlsiB158
Carg24238	Melon (DHL92) v3.6.1	carmedB0185