Carg24219 (gene) Silver-seed gourd

Overview
NameCarg24219
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S8
LocationCucurbita_argyrosperma_scaffold_225 : 369681 .. 371787 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTTATACACAACTTTCCTCATTGTTCTACGTATCTCAATTTTTCGTTGTTTCTTTTTATTAATCTTGGAGGACTTTTTGTTGTTAGGTATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACAGGAGGCAAGAAGAAAGCCTGGAGGAAGAAGAGAAAGTAATTACTAGTTCTATTTAGCTGAGTGCAATTTGATATCCGTTTTTGCTTTCATCACATTTTTTGCCAACATTTTGTACTTTTCTTTCTATGCTTGGTTTTTGCGGTGATTTGTAGGTTTAGCTGAGATATTTATAATTATTATTTTTGTGGATAACTGGTGAAGTACTTGGTGGCAAGAGTTCATCATTCGTTATCTTTTCCAATATATATTTCAATAATCTCGATTAATCTGCATTATTTATCTGATCTCCTCTGGTTGATTTTTGTATATTTCTGTTCTAAATAATTGCTCGTCCCATGTTGCATTTTCACATTTGTTTAATGAACGGCACAATTTCTCTTATTGATGTAGAAACCTAGTTTCTTTGAATATTTGTGCTATGTTACAGTTTGATGTTTTACAATGTAGAAGTTGAAATGTTTCCTTCTGTAAGTTATATTTTATTATGATTTGGTACTCAAGGTACAACTTTCATTTTCTTTTCATGTTTTTGCAGTCCTTTTGATATTGCCTCTTTCCCTTTGTTTGTAAAGGTATGAGCTCGGCAGGCAACCTGCCAACACCAAGATATCCAGTGATAAATCAATCCGGAGGATTAGAGTTCGTGGGGGAAATGTGAAGTGGCGAGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGTGACTAGAAAGTCCCGTATTCTTGATGTGGTCTACAATGCATCTAATAATGAGCTTGTTCGTACTCAAACTTTGGTGAAGAGTGCCATCGTTCAAGTTGATGCAGCACCATTTAAGCAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCACAGCATCTTCTAAGAAGGAAGAGGTAGAGCAGCACTTGATCCAAGATACAACTTAATTTTGATGGATAATGATATGACATTCTTAATCTGTATTATACAACACTTGATCCAAAACACAACTTAATTTTAATGGTTGATAGGAAGCTGATGCTGCCACTGAGGAGGTAAAGAAGAGTAACCACGTGCAGCGCAAAATAGAGAAACGTCAGCAGGACCGTAAGCTTGACCCACACATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCGTGTATCTCATCAAGACCTGGTCAATGTGGCCGAGCAGATGGGTAAGTATTATGAATCTCATACCGATTCCTGATTCTGTTGTGTTCTTTCAAACTTGTTGAGCTCAATCATTGAAGGTGAGGAATAGTTTTTGGGTAATGTTGCTGATGAGGCCTTGCAAATTTTTGACAGATATATTTTGGAAGGCAAGGAGCTTGAATTCTACATGAAAAAGCTCCAAAGGAAGAAGGGTAAAGGAGCTGGTGCTTCATAGATTTTGTTGTCGAGTTCGAGTTCTTTTCGGCTCGAGTTTCTTGTTCCTAATTCTTCGTAGGACGCCAATGATTGCAGCTGAGATGAAACTGCTATTTTGGAACTACTTCAGTTTTGCTGGTAATAGTTTAATTACAAATACTTAGTGACTTTCATGTTAACAACAGTTTGTTTATTAGCTTTAAAAGCTTTAAAGTTTAATTCCCTTCCATTCCTTTGCATGACGCTTTTCAATTAATGATCACAGTAGTTTTTTATTCGGTTTCAATTGTATGCATGGACTTGGGAATTCTGCATAAAGTAAGAATTTATGACTAATTTCTTTTTAATTCTAAAGTGAATGTAAATTTTTTTTTTTTAGAACTTTTTCCAAAAAATGTTTTTTCAAGGAGTTTTTTTGTCACTAATGGTTTGAATTTGAGTTTGAGTTCTGTATGATTTACACGAGTACTCTGAAGTGTCACACGATCGCTGTGTGAGTTCTAAAATTTTCTTATTTTTCTAAATTACTCAAACTATGTATAAAAAGAAATAGATATTTAATGTTAAAAATGATTTTTCGAGTATGATTTTG

mRNA sequence

ATGGGTATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACAGGAGGCAAGAAGAAAGCCTGGAGGAAGAAGAGAAAGTATGAGCTCGGCAGGCAACCTGCCAACACCAAGATATCCAGTGATAAATCAATCCGGAGGATTAGAGTTCGTGGGGGAAATGTGAAGTGGCGAGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGTGACTAGAAAGTCCCGTATTCTTGATGTGGTCTACAATGCATCTAATAATGAGCTTGTTCGTACTCAAACTTTGGTGAAGAGTGCCATCGTTCAAGTTGATGCAGCACCATTTAAGCAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCACAGCATCTTCTAAGAAGGAAGAGGAAGCTGATGCTGCCACTGAGGAGGTAAAGAAGAGTAACCACGTGCAGCGCAAAATAGAGAAACGTCAGCAGGACCGTAAGCTTGACCCACACATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCGTGTATCTCATCAAGACCTGGTCAATGTGGCCGAGCAGATGGATATATTTTGGAAGGCAAGGAGCTTGAATTCTACATGAAAAAGCTCCAAAGGAAGAAGGGTAAAGGAGCTGGTGCTTCATAGATTTTGTTGTCGAGTTCGAGTTCTTTTCGGCTCGAGTTTCTTGTTCCTAATTCTTCGTAGGACGCCAATGATTGCAGCTGAGATGAAACTGCTATTTTGGAACTACTTCAGTTTTGCTGGTAATAGTTTAATTACAAATACTTAGTGACTTTCATGTTAACAACAGTTTGTTTATTAGCTTTAAAAGCTTTAAAGTTTAATTCCCTTCCATTCCTTTGCATGACGCTTTTCAATTAATGATCACAGTAGTTTTTTATTCGGTTTCAATTGTATGCATGGACTTGGGAATTCTGCATAAAGTAAGAATTTATGACTAATTTCTTTTTAATTCTAAAGTGAATGTAAATTTTTTTTTTTTAGAACTTTTTCCAAAAAATGTTTTTTCAAGGAGTTTTTTTGTCACTAATGGTTTGAATTTGAGTTTGAGTTCTGTATGATTTACACGAGTACTCTGAAGTGTCACACGATCGCTGTGTGAGTTCTAAAATTTTCTTATTTTTCTAAATTACTCAAACTATGTATAAAAAGAAATAGATATTTAATGTTAAAAATGATTTTTCGAGTATGATTTTG

Coding sequence (CDS)

ATGGGTATTTCTCGTGATTCTATGCACAAGAGGCGTGCCACAGGAGGCAAGAAGAAAGCCTGGAGGAAGAAGAGAAAGTATGAGCTCGGCAGGCAACCTGCCAACACCAAGATATCCAGTGATAAATCAATCCGGAGGATTAGAGTTCGTGGGGGAAATGTGAAGTGGCGAGCTTTTAGGCTTGATACTGGAAACTACTCTTGGGGTAGTGAGGCTGTGACTAGAAAGTCCCGTATTCTTGATGTGGTCTACAATGCATCTAATAATGAGCTTGTTCGTACTCAAACTTTGGTGAAGAGTGCCATCGTTCAAGTTGATGCAGCACCATTTAAGCAGTGGTATCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCACAGCATCTTCTAAGAAGGAAGAGGAAGCTGATGCTGCCACTGAGGAGGTAAAGAAGAGTAACCACGTGCAGCGCAAAATAGAGAAACGTCAGCAGGACCGTAAGCTTGACCCACACATTGAAGAACAATTCAGCAGTGGTCGTTTGATGGCGTGTATCTCATCAAGACCTGGTCAATGTGGCCGAGCAGATGGATATATTTTGGAAGGCAAGGAGCTTGAATTCTACATGAAAAAGCTCCAAAGGAAGAAGGGTAAAGGAGCTGGTGCTTCATAG

Protein sequence

MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFRLDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTTASSKKEEEADAATEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS
Homology
[Close]
BLAST of Carg24219 vs. NCBI nr
Match: XP_022937545.1 (40S ribosomal protein S8-like [Cucurbita moschata])

HSP 1 Score: 374.4 bits (960), Expect = 2.6e-100
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 219

[Close]
BLAST of Carg24219 vs. NCBI nr
Match: XP_022969662.1 (40S ribosomal protein S8-like [Cucurbita maxima])

HSP 1 Score: 374.4 bits (960), Expect = 2.6e-100
Identity = 218/219 (99.54%), Postives = 218/219 (99.54%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRXXXXXXXXXXXXXXXXXXXXXXXXX VQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 219

[Close]
BLAST of Carg24219 vs. NCBI nr
Match: XP_023538460.1 (40S ribosomal protein S8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.4 bits (960), Expect = 2.6e-100
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 219

[Close]
BLAST of Carg24219 vs. NCBI nr
Match: XP_022929761.1 (40S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal protein S8-like [Cucurbita moschata] >XP_022997461.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_022997462.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_023547179.1 40S ribosomal protein S8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.2 bits (957), Expect = 5.9e-100
Identity = 192/219 (87.67%), Postives = 193/219 (88.13%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGR                          VQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTVASAKKEEEGDAPTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]
BLAST of Carg24219 vs. NCBI nr
Match: XP_008451649.1 (PREDICTED: 40S ribosomal protein S8-like [Cucumis melo])

HSP 1 Score: 369.4 bits (947), Expect = 8.5e-99
Identity = 197/219 (89.95%), Postives = 200/219 (91.32%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGR     XXXXXXXX             VQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSXXXXXXXXGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]
BLAST of Carg24219 vs. TAIR10
Match: AT5G59240.1 (Ribosomal protein S8e family protein)

HSP 1 Score: 329.3 bits (843), Expect = 1.8e-90
Identity = 169/219 (77.17%), Postives = 184/219 (84.02%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRK+RILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGR                          VQRK+E RQ+ R LD H+EEQFSSGRL+AC
Sbjct: 121 DIGR---------KKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           I+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGA+
Sbjct: 181 IASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

[Close]
BLAST of Carg24219 vs. TAIR10
Match: AT5G20290.1 (Ribosomal protein S8e family protein)

HSP 1 Score: 319.3 bits (817), Expect = 1.8e-87
Identity = 187/221 (84.62%), Postives = 206/221 (93.21%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+R+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGR-----XXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSG 180
           ++GR     XXXXXXXXXXXXXXXXXXXXXXXXXX+ RKI  RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 217
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

[Close]
BLAST of Carg24219 vs. Swiss-Prot
Match: sp|P49199|RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 339.3 bits (869), Expect = 3.1e-92
Identity = 175/220 (79.55%), Postives = 184/220 (83.64%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTK+SS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGR--XXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLM 180
           DIGR                            V RK+EKRQQ R LD HIEEQF SGRL+
Sbjct: 121 DIGRKKKAPAAKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLL 180

Query: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 219
           ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA A
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220

[Close]
BLAST of Carg24219 vs. Swiss-Prot
Match: sp|Q08069|RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 336.3 bits (861), Expect = 2.6e-91
Identity = 173/221 (78.28%), Postives = 184/221 (83.26%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTK+SS+K++RR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120

Query: 121 DIGR---XXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRL 180
           DIGR                             V RK+EKR++ R LDPHIEEQF SGRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA 219
           +ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK A A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221

[Close]
BLAST of Carg24219 vs. Swiss-Prot
Match: sp|O81361|RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.8e-90
Identity = 186/220 (84.55%), Postives = 199/220 (90.45%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRK+R+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGR-XXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMA 180
           +IGR      XXXXXXXXXXXXXXX      V  K+EKRQQ R LD HIEEQF  G+L+A
Sbjct: 121 EIGRKKKTAAXXXXXXXXXXXXXXXAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLA 180

Query: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           CISSRPGQCG+ADG ILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 CISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGAA 220

[Close]
BLAST of Carg24219 vs. Swiss-Prot
Match: sp|Q9FIF3|RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.2e-89
Identity = 169/219 (77.17%), Postives = 184/219 (84.02%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSEAVTRK+RILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGR                          VQRK+E RQ+ R LD H+EEQFSSGRL+AC
Sbjct: 121 DIGR---------KKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           I+SRPGQCGRADGYILEGKELEFYMKKLQ+KKGK AGA+
Sbjct: 181 IASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210

[Close]
BLAST of Carg24219 vs. Swiss-Prot
Match: sp|Q93VG5|RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.3e-86
Identity = 187/221 (84.62%), Postives = 206/221 (93.21%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEA TRK+R+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGR-----XXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSG 180
           ++GR     XXXXXXXXXXXXXXXXXXXXXXXXXX+ RKI  RQ+ R LD HIE+QF+SG
Sbjct: 121 ELGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 181 RLMACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGA 217
           RL+ACISSRPGQCGRADGYILEGKELEFYMKK+Q+KKGKGA
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221

[Close]
BLAST of Carg24219 vs. TrEMBL
Match: tr|A0A1S3BRZ4|A0A1S3BRZ4_CUCME (40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103492879 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 5.6e-99
Identity = 197/219 (89.95%), Postives = 200/219 (91.32%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGR     XXXXXXXX             VQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSXXXXXXXXGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]
BLAST of Carg24219 vs. TrEMBL
Match: tr|A0A0A0LJA0|A0A0A0LJA0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_2G059750 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 9.6e-99
Identity = 188/219 (85.84%), Postives = 192/219 (87.67%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRR TGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRETGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+R+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGR                          VQRKIEKRQQDRKLDPHIEEQFSSGRLMAC
Sbjct: 121 DIGRKKKTSASVKKEEEGDAGTEEVKKSNHVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

[Close]
BLAST of Carg24219 vs. TrEMBL
Match: tr|A0A1S3CRZ5|A0A1S3CRZ5_CUCME (40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103504075 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 9.0e-97
Identity = 213/220 (96.82%), Postives = 218/220 (99.09%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGR-XXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMA 180
           DIGR XXXXXXXXXXXXXXXXXXXXXXXXXXVQRK+EKRQ+ RKLDPHIEEQFSSGRLMA
Sbjct: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKLEKRQEGRKLDPHIEEQFSSGRLMA 180

Query: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 CISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220

[Close]
BLAST of Carg24219 vs. TrEMBL
Match: tr|A0A0A0KFT0|A0A0A0KFT0_CUCSA (40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_6G382970 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 5.8e-96
Identity = 211/222 (95.05%), Postives = 218/222 (98.20%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKSIRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAV+RK+RILDVVYNASNNELVRTQTLVKSA+VQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGR---XXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRL 180
           DIGR   XXXXXXXXXXXXXXXXXXXXXXXXXXVQRK+EKRQ+ RKLDPHIEEQFSSGRL
Sbjct: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKLEKRQEGRKLDPHIEEQFSSGRL 180

Query: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 MACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 222

[Close]
BLAST of Carg24219 vs. TrEMBL
Match: tr|A0A1R3KEG0|A0A1R3KEG0_COCAP (40S ribosomal protein S8 OS=Corchorus capsularis OX=210143 GN=CCACVL1_01887 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 9.9e-96
Identity = 182/219 (83.11%), Postives = 190/219 (86.76%), Query Frame = 0 

Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SS+K++RRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNYSWGSEAVTRK+RILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXXXXXXXXVQRKIEKRQQDRKLDPHIEEQFSSGRLMAC 180
           DIGR                          V RKIEKRQ+DRKLDPHIEEQF SGRL+AC
Sbjct: 121 DIGRKKKTAAKKDATEVGEAAAEETKKSNHVLRKIEKRQKDRKLDPHIEEQFGSGRLLAC 180

Query: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAS 220
           ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGA+
Sbjct: 181 ISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 219

The following BLAST results are available for this feature:
BLAST of Carg24219 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937545.12.6e-100100.0040S ribosomal protein S8-like [Cucurbita moschata][more]
XP_022969662.12.6e-10099.5440S ribosomal protein S8-like [Cucurbita maxima][more]
XP_023538460.12.6e-100100.0040S ribosomal protein S8-like [Cucurbita pepo subsp. pepo][more]
XP_022929761.15.9e-10087.6740S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal... [more]
XP_008451649.18.5e-9989.95PREDICTED: 40S ribosomal protein S8-like [Cucumis melo][more]
BLAST of Carg24219 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G59240.11.8e-9077.17Ribosomal protein S8e family protein[more]
AT5G20290.11.8e-8784.62Ribosomal protein S8e family protein[more]
BLAST of Carg24219 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49199|RS8_ORYSJ3.1e-9279.5540S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 S... [more]
sp|Q08069|RS8_MAIZE2.6e-9178.2840S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2[more]
sp|O81361|RS8_PRUAR3.8e-9084.5540S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1[more]
sp|Q9FIF3|RS82_ARATH3.2e-8977.1740S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1[more]
sp|Q93VG5|RS81_ARATH3.3e-8684.6240S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1[more]
BLAST of Carg24219 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BRZ4|A0A1S3BRZ4_CUCME5.6e-9989.9540S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103492879 PE=3 SV=1[more]
tr|A0A0A0LJA0|A0A0A0LJA0_CUCSA9.6e-9985.8440S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_2G059750 PE=3 SV=1[more]
tr|A0A1S3CRZ5|A0A1S3CRZ5_CUCME9.0e-9796.8240S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103504075 PE=3 SV=1[more]
tr|A0A0A0KFT0|A0A0A0KFT0_CUCSA5.8e-9695.0540S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_6G382970 PE=3 SV=1[more]
tr|A0A1R3KEG0|A0A1R3KEG0_COCAP9.9e-9683.1140S ribosomal protein S8 OS=Corchorus capsularis OX=210143 GN=CCACVL1_01887 PE=3... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR018283Ribosomal_S8e_CS
IPR001047Ribosomal_S8e
IPR022309Ribosomal_S8e/biogenesis_NSA2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24219-RACarg24219-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022309Ribosomal protein S8e/ribosomal biogenesis NSA2PFAMPF01201Ribosomal_S8ecoord: 1..196
e-value: 1.2E-57
score: 193.8
NoneNo IPR availableGENE3DG3DSA:2.40.10.450coord: 32..111
e-value: 7.7E-29
score: 102.2
NoneNo IPR availableGENE3DG3DSA:1.10.168.20coord: 112..175
e-value: 2.5E-27
score: 96.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..167
NoneNo IPR availablePANTHERPTHR10394:SF940S RIBOSOMAL PROTEIN S8-2coord: 1..216
NoneNo IPR availableCDDcd11380Ribosomal_S8e_likecoord: 5..196
e-value: 1.10598E-56
score: 177.712
IPR001047Ribosomal protein S8eTIGRFAMTIGR00307TIGR00307coord: 1..198
e-value: 2.4E-46
score: 155.0
IPR001047Ribosomal protein S8ePANTHERPTHR1039440S RIBOSOMAL PROTEIN S8coord: 1..216
IPR018283Ribosomal protein S8e, conserved sitePROSITEPS01193RIBOSOMAL_S8Ecoord: 11..30

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24219Cla022817Watermelon (97103) v1carwmB0994
Carg24219Csa2G059750Cucumber (Chinese Long) v2carcuB1009
Carg24219MELO3C004020Melon (DHL92) v3.5.1carmeB0970
Carg24219ClCG11G012110Watermelon (Charleston Gray)carwcgB0969
Carg24219CSPI02G06060Wild cucumber (PI 183967)carcpiB1033
Carg24219Cucsa.089300Cucumber (Gy14) v1carcgyB1112
Carg24219CmaCh05G006890Cucurbita maxima (Rimu)carcmaB1379
Carg24219CmaCh12G008860Cucurbita maxima (Rimu)carcmaB1378
Carg24219CmoCh05G007240Cucurbita moschata (Rifu)carcmoB1334
Carg24219CmoCh12G008940Cucurbita moschata (Rifu)carcmoB1333
Carg24219Lsi11G007610Bottle gourd (USVL1VR-Ls)carlsiB908
Carg24219Cp4.1LG11g06420Cucurbita pepo (Zucchini)carcpeB1381
Carg24219Cp4.1LG07g07310Cucurbita pepo (Zucchini)carcpeB1382
Carg24219CsGy2G006180Cucumber (Gy14) v2carcgybB0982
Carg24219MELO3C004020.2Melon (DHL92) v3.6.1carmedB0980
Carg24219CsaV3_2G008440Cucumber (Chinese Long) v3carcucB1039
Carg24219Cla97C11G218020Watermelon (97103) v2carwmbB1048
Carg24219Bhi06G001114Wax gourdcarwgoB1164
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg24219Carg08377Silver-seed gourdcarcarB073
The following block(s) are covering this gene:
GeneOrganismBlock
Carg24219Wild cucumber (PI 183967)carcpiB1032
Carg24219Cucumber (Chinese Long) v2carcuB1008
Carg24219Cucumber (Chinese Long) v3carcucB1038
Carg24219Bottle gourd (USVL1VR-Ls)carlsiB909
Carg24219Melon (DHL92) v3.5.1carmeB0969
Carg24219Melon (DHL92) v3.6.1carmedB0979
Carg24219Watermelon (Charleston Gray)carwcgB0970
Carg24219Watermelon (97103) v1carwmB0995