Carg24100 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24100
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ras-related protein like
Location	Cucurbita_argyrosperma_scaffold_177 : 139979 .. 144135 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCGCCATTGCCGTCTATAAATACCTCTCTCTCTCTCTCTCTCCTCGTTTTGCTTTGTAAACTCCATTTTTTTCTAGAGAGAGAAACGAAGAAGCATTGGTTCATTAGCTGAGAGATACAGAACTGAGAATGGGATCGCCGTCCGGCCAGATCAGTGGCTACGATCTCTCATTTAAGGTGCTTCTTATCGGCGATTCCGGCGTCGGTAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTGTCGACAATCTCACTCCTACAATTGGTACTTCCTTTTTCTAACTCAATCGATTATGTTCCTTCTCTTTATCTACTCTTAATCTGTTTTGTTGCTTCGGAAATTAAGTGATTGAGTTGATTATTTGTGTTGCATTGTGCTTCTTCTAGTAGGTTTCGATTCGTTCATTTGAATTTAATGGAGAAAGTAGAGGAGTTGGAGATTTTAGATTGAGGAAAGTATAGGTGATTTGTGGAATTGAATTTATTCTGATTAGTTGTTCTAAGGGAGAATTTGTGTTCACTGTCATCTATAGGTGTGGATTTCAAGATCAAACAACTTACGATTGGTGGTAAGAGATTGAAGCTGACTATTTGGGATACCGGTAATGAACTGAATCAAATGGATCTCTGTTTTACGTTTTTTATGATTTCAATTTTGGAGTTGGACACTGAACTTTGGATCGTTTTGAAAATTTAAATATAGGTTAAAATATATTTTTAGTAAGATTTTTTAACCTATATTTAAAATTTCAAAATAATGTAAGATTTTTTTGCCTCTATATTTGGCAAGTATTACGATCGAACATCTAGGGTTAAATTTATTTCTGTGATCGAGGCATATTAATAGATAGGTAATTGAATAACTTTTTAATTTGGGATGCTTGATTCACTTACCCATATTTTATCCATAAGTTATTTGTCAATCAAAAAAAAAAATTAATAAGTCAAAAGATTTCATTGCGATATTTTTTTTTGAAGGACTTGTATTTTAATAGATTGTGGGCAGGGAGGAAAAGATAAGTCTTATTTGGAACCGTTTTTTGGTCTCTGTTCTGTTAATTTATGTTGCAATTACACTTTCTTTTCCATTAATGACTGAAGATATTTAAGTTCTCCATGCAAGATGGTCACGCTTGCTTGCTTATAAGTATAAACTAAAAAACAATTCACTCGTCAAAAGGTGGATGGCTTTCTGAATCATTGAATTATCCTTTCAAAATTAATAATTTAATGTTACTTAAAGAAAAGGTGGCTGACTTATTGAAGATTTAACATGGCGCAGCTGGGCAAGAGAGGTTCAGATCACTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGGTAAGCTATCAAATGGTAATCTTGTGCTTCGACTTAGATGCATTCAGTGATTTACTGTCAGCTTTCAGAGTCCATTGAATGTTCCAAAACATATTAAACGATGTTATTACTATGAATCTCAGCATTTTTGGTATGTTCTGATAGAGTATTGATTGAGCTTGATCATGCCACTGAATTAGGAGAAGGATATGCAGAAGATCGTTCGTTATTTTTCTTCTTTTTCTCTAAAACCTCTTTTACAATTAACGAATTGGGAATTATTTATAGATTCATTTTGTTGAATTCCCTCTGAACTCAAATTACGGTCAAGATGGGACTAGTTATTTCAGTCATTGGATGAATATTTGATAGCACCCATCTGATTGATGGGTATTTTTGGATAGAACTTTATTGTTTATGTTTCATTCTTTTCTATTTCCTCTTTTAAAAGAAGTGCACATTCGTTGTGAAATGTGTTAGTTCTCATCAAACTCTTTAGATCCTAAAGTAAGAATTCATGGAGAATTCTAAATTCGCACTTTCTTATATTACATTACTTTTGGTCTAGTGATATTGTTTTAATTTTTGTTTGTCTTAGTATATGATGTGACTCGGAGAGAAACCTTTACAAACCTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAAATCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGGGTAAGTTCTTTGTATCTCTTACGACACTCATGGTCAATACAGTTTATAAATGTATAAACTAGGATGTCTATGTGTAAAATGGAAGGATTAGATACTAATGACTTTATCGAAAATGGCATGATAATCTGATCTGAAAGGACCTCAGACCCTTACGTATATGAGGATGCTTAGTCGCATTACTCTATACTAGAGGGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTCCCCTCCTCAATCGATGTGGGATCTCATAATCCACCCTCCTTGGGAGCCCAACGTTCTCACTGGCACACTGCTCGGTGTCTTGCTCTGATACCATTTGTAACAGCTCAAAACCACCGCTAGTAGATATTGTTCGCTTTGACCCTTTACGTATCGCCGTCAACCTCACGGTTGGAGAGGAGAACGAAGCATTCCTTTTAAGGGTGTAGAAACCTCTCCTTAATAGACGCGTTTTAAAACTGTGAGGCTGGCGGTGATACGTAATGGGTCAAAGCAGACAATATTTGCTACTAGTGGGTTTGGATTGTTACAAATGATATTAGAGCCAGGCACCGAGCGGTGTACCAACAGGGACATTGGCCCCCAGGAGGGGTGGATTGTGAGATCCCACGTTAGTTGGAGAGGGAAACAAAACATTTCTTATAAGGGTAACAAAACATTTCTTATAACGGTGTGGAAACATCTTCCTAATAGACACGTTATAAAATCATGAAGCTGACGGAGATACGTAACGGGCCAAAGAAGACAATATCTGCGCACAATTTATTAATGTGTTGCATTAATCTCAGGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTTGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGCGCTAAAACCAGAGAAAATGTAGCGAAATGTTTTGAAGAACTTGCAATTAAGGTACTTTTTAACACAACAGTTATCATTTAATTACGTTAGAAAGAAAACCAATGACATTTTACATGTGAATATGATATGCAAAAACATAGCAGATTAGCTGTTGGTGGACACAGTAAATAGTTTAAGAAGTTGAGTGTAAAAATGGTTGTTTCCTTTTAAATACCGAAACTTGTAGCCAATAGTAATAGTGATCCGTGTAACAGCCCAAGTCCACCGCTAGCCAATATTGTCTATTTTGGGCTTCCCTCAAGATTCTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACTCTAATAAAAAATATTTCGTTCCTCTCTCCAACCAATTTGGGATCTCATAATCCACCTCCCTTCGGGGTCCAACGTTCTCGTTGATACTCGTTCCTCTTTCCAATCGATGTGGGATCTCACAATCCACCTCCCTTTGGGACTAGCGTTCTTGCTGACACTCATTTCTCTCTCTAATCGATGTGGGATCTCACAATCCACCCCCCTTCGAAGCCCAGTGTCCTCGCTAGCACTCGTTCCTCTTTCCAATCGATTTGGGATCTCACAATCCAGCGTCCTCTCTAGCACACCACCCGGAACTAGACTCTGATACCATTGTAACGGCCCAAGCCCACTGCTGGTAGATATAGTCTTCTTTGGGCTTTCCCTCAAGGTTTTTAAAACTCGTCTGCTAGGGAGAGGTTTCCACGCCCTTATAAAAAATGTTGTTCCTCTCCCCATCTCACAATCAGTTCCAGTGATAGGGCATAGGGAGCGGAAAAGATTCTCTATTTTAACTTTTATATATGATTTTTCAACTATGAACGTTTAGGAGGAGAAATAAGTGAGGAAAAAAACATAAACGTATTAACATTTTTATATAATCTTCTCGATTTCAACAAGCCGAGGGGGCGATTTCCCGCCCTTGATCTATAGAGAATTTGGCAAACAACAACACTTATAGAATTACCGTCATATAAAGGAAGCTCCCAAGAATCTAGGAAACATGACATTATTGTTTGGAAACTTTGCATATTCAAATGTTTGTAAATATTGTGCAGATAATGGAGGTTCCGAGTTTCTTGGAGGAAAGATCCAGTGTGGTAAAGAGGAACATGTTAAGGCAAAAGCAGGAAAGTCAAGGTCAACGAAGTGGTGGTTGTTGCTCTTAGGAAGCAGCAGCTTATATAAAAACC

mRNA sequence

CGTCGCCATTGCCGTCTATAAATACCTCTCTCTCTCTCTCTCTCCTCGTTTTGCTTTGTAAACTCCATTTTTTTCTAGAGAGAGAAACGAAGAAGCATTGGTTCATTAGCTGAGAGATACAGAACTGAGAATGGGATCGCCGTCCGGCCAGATCAGTGGCTACGATCTCTCATTTAAGGTGCTTCTTATCGGCGATTCCGGCGTCGGTAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTGTCGACAATCTCACTCCTACAATTGGTGTGGATTTCAAGATCAAACAACTTACGATTGGTGGTAAGAGATTGAAGCTGACTATTTGGGATACCGCTGGGCAAGAGAGGTTCAGATCACTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGTATATGATGTGACTCGGAGAGAAACCTTTACAAACCTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAAATCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGGGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTTGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGCGCTAAAACCAGAGAAAATGTAGCGAAATGTTTTGAAGAACTTGCAATTAAGATAATGGAGGTTCCGAGTTTCTTGGAGGAAAGATCCAGTGTGGTAAAGAGGAACATGTTAAGGCAAAAGCAGGAAAGTCAAGGTCAACGAAGTGGTGGTTGTTGCTCTTAGGAAGCAGCAGCTTATATAAAAACC

Coding sequence (CDS)

ATGGGATCGCCGTCCGGCCAGATCAGTGGCTACGATCTCTCATTTAAGGTGCTTCTTATCGGCGATTCCGGCGTCGGTAAAAGTAGCCTTCTACACACCTTCATTTCCGCCTCTGTCGACAATCTCACTCCTACAATTGGTGTGGATTTCAAGATCAAACAACTTACGATTGGTGGTAAGAGATTGAAGCTGACTATTTGGGATACCGCTGGGCAAGAGAGGTTCAGATCACTAACTAGTTCATACTACAGAGGTGCTCAAGGGATCATTCTTGTATATGATGTGACTCGGAGAGAAACCTTTACAAACCTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAAATCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGATAGGGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTTGCCAACAAGCTTGGATCTTTGTTTCTTGAATGCAGCGCTAAAACCAGAGAAAATGTAGCGAAATGTTTTGAAGAACTTGCAATTAAGATAATGGAGGTTCCGAGTTTCTTGGAGGAAAGATCCAGTGTGGTAAAGAGGAACATGTTAAGGCAAAAGCAGGAAAGTCAAGGTCAACGAAGTGGTGGTTGTTGCTCTTAG

Protein sequence

MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGKRLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQDCVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVPSFLEERSSVVKRNMLRQKQESQGQRSGGCCS

Homology

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BLAST of Carg24100 vs. NCBI nr
Match: XP_022925432.1 (ras-related protein RABC2a-like [Cucurbita moschata] >XP_023535218.1 ras-related protein RABC2a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413.7 bits (1062), Expect = 3.8e-112
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK
Sbjct: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           SFLEERSSVVKRNMLRQKQESQGQRSGGCCS
Sbjct: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 211

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BLAST of Carg24100 vs. NCBI nr
Match: XP_022973510.1 (ras-related protein RABC2a-like [Cucurbita maxima] >XP_022973511.1 ras-related protein RABC2a-like [Cucurbita maxima])

HSP 1 Score: 409.8 bits (1052), Expect = 5.5e-111
Identity = 209/211 (99.05%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK
Sbjct: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CVKMLVGNKVDRESE AVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESESAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           SFLEERSSVVKRNMLRQKQE QGQRSGGCCS
Sbjct: 181 SFLEERSSVVKRNMLRQKQEGQGQRSGGCCS 211

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BLAST of Carg24100 vs. NCBI nr
Match: XP_022143972.1 (ras-related protein RABC2a-like [Momordica charantia])

HSP 1 Score: 365.9 bits (938), Expect = 9.1e-98
Identity = 184/211 (87.20%), Postives = 198/211 (93.84%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGS S   + YDLSFKVLLIGDSGVGKSSLL TF+S+S+ +L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSAHTAAYDLSFKVLLIGDSGVGKSSLLLTFVSSSLLDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFR+LTSSYYRGAQGIILVYDVTRRE+F NL D+WANEVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRESFINLSDIWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           SFLEERS+V+KRN+LRQKQE Q Q+SGGCCS
Sbjct: 181 SFLEERSTVIKRNILRQKQEGQAQQSGGCCS 211

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BLAST of Carg24100 vs. NCBI nr
Match: XP_008463077.1 (PREDICTED: ras-related protein RABC2a-like [Cucumis melo])

HSP 1 Score: 365.5 bits (937), Expect = 1.2e-97
Identity = 187/211 (88.63%), Postives = 198/211 (93.84%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +   +LSFKVLLIGDS VGKSSLLHTFISAS+ +L+PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSPSPHL---NLSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETF NLLDVWANEVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CVKMLVGNKVDRESER VSREDGIALANKLGSLF ECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           SFLEERSS+VKR++LRQKQE Q Q+SGGCCS
Sbjct: 181 SFLEERSSLVKRSILRQKQEGQAQQSGGCCS 208

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BLAST of Carg24100 vs. NCBI nr
Match: XP_004138376.1 (PREDICTED: ras-related protein RABC2a-like [Cucumis sativus] >KGN45874.1 hypothetical protein Csa_6G016920 [Cucumis sativus])

HSP 1 Score: 365.2 bits (936), Expect = 1.5e-97
Identity = 187/211 (88.63%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +   +LSFKVLLIGDS VGKSSLLHTFISAS+ +L+PTIGVDFKIKQLT+ GK
Sbjct: 1   MGSPSPHL---NLSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVAGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETF NLLDVWANEVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CVKMLVGNKVDRESER VSREDGIALANKLGSLF ECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           SFLEERSS+VKRN+LRQKQE Q Q+SGGCCS
Sbjct: 181 SFLEERSSLVKRNILRQKQEGQAQQSGGCCS 208

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BLAST of Carg24100 vs. TAIR10
Match: AT5G03530.1 (RAB GTPase homolog C2A)

HSP 1 Score: 336.7 bits (862), Expect = 1.1e-92
Identity = 169/211 (80.09%), Postives = 189/211 (89.57%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGS SGQ SGYDLSFK+LLIGDSGVGKSSLL +FIS+SV++L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFR+LTSSYYRGAQGIILVYDVTRRETFTNL+DVW  E+ELY TNQ+
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CV+MLVGNKVDRESER VSRE+GIALA +L  +FLECSA+TR+NV +CFEELA+KIMEVP
Sbjct: 121 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           S LEE SS VKRN+L+QK E Q     GCCS
Sbjct: 181 SLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

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BLAST of Carg24100 vs. TAIR10
Match: AT3G09910.1 (RAB GTPase homolog C2B)

HSP 1 Score: 299.7 bits (766), Expect = 1.4e-81
Identity = 155/211 (73.46%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGS SGQ SGYDLSFK+LLIGDSGVGKSSLL +FIS+SV++L PTIGVDFKIKQ+ + GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQE+FR+LTSSY+RG+QGIILVYDVT+RETF NL D+WA E+ELY TN D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           C+KMLVGNKVDRESER VSRE+G+ALA  L  LF ECSA+TRENV  CFEELA+KIMEVP
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           S LEE SS VKR      +       G CCS
Sbjct: 181 SLLEEGSSSVKR------KPDYRAHQGRCCS 204

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BLAST of Carg24100 vs. TAIR10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18)

HSP 1 Score: 281.6 bits (719), Expect = 4.1e-76
Identity = 144/212 (67.92%), Postives = 171/212 (80.66%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGS SGQ   +D  FKVLLIGDSGVGKSSLL +F S + D+L+PTIGVDFK+K LTIG K
Sbjct: 1   MGSSSGQ-PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           +LKL IWDTAGQERFR+LTSSYYRGAQGII+VYDVTRR+TFTNL D+WA E++LY TNQD
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           C+KMLVGNKVD+ESERAVS+++GI  A + G LFLECSAKTR NV +CFEEL +KI+E P
Sbjct: 121 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SFLEERSSVVKRNMLRQK-QESQGQRSGGCCS 212
           S   E SS  K+N+ +Q   ++    S  CCS
Sbjct: 181 SLTAEGSSGGKKNIFKQNPAQTTSTSSSYCCS 211

[Close]

BLAST of Carg24100 vs. TAIR10
Match: AT3G11730.1 (Ras-related small GTP-binding family protein)

HSP 1 Score: 168.7 bits (426), Expect = 3.8e-42
Identity = 96/201 (47.76%), Postives = 125/201 (62.19%), Query Frame = 0


Query: 11  YDLSFKVLLIGDSGVGKSSLLHTFI-SASVDNLTPTIGVDFKIKQLTIGGKRLKLTIWDT 70
           YD  FK+LLIGDS VGKS LL  F   A +D+   TIGVDFKI+ +   GK +KL IWDT
Sbjct: 5   YDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDT 64

Query: 71  AGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQDCVKMLVGNK 130
           AGQERFR++TSSYYRGA GII+VYD T  E+F N+   W +E++ Y  N+   K+L+GNK
Sbjct: 65  AGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQ-WLSEIDRY-ANESVCKLLIGNK 124

Query: 131 VDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVPSFLEERSSV 190
            D    + VS E G ALA++LG  FLE SAK   NV + F  +A +I +        +  
Sbjct: 125 NDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKT 184

Query: 191 VKRNMLRQKQESQGQRSGGCC 211
                ++ K +   Q +GGCC
Sbjct: 185 SGPGTVQMKGQPIQQNNGGCC 203

[Close]

BLAST of Carg24100 vs. TAIR10
Match: AT4G17530.1 (RAB GTPase homolog 1C)

HSP 1 Score: 162.2 bits (409), Expect = 3.6e-40
Identity = 97/202 (48.02%), Postives = 124/202 (61.39%), Query Frame = 0


Query: 11  YDLSFKVLLIGDSGVGKSSLLHTFISAS-VDNLTPTIGVDFKIKQLTIGGKRLKLTIWDT 70
           YD  FK+LLIGDSGVGKS LL  F   S +D+   TIGVDFKI+ +   GK +KL IWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDT 64

Query: 71  AGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQDCVKMLVGNK 130
           AGQERFR++TSSYYRGA GII+ YDVT  E+F N+   W NE++ Y  +++  K+LVGNK
Sbjct: 65  AGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQ-WLNEIDRY-ASENVNKLLVGNK 124

Query: 131 VDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVPSFLEERSSV 190
            D  S++ VS E   A A++LG  FLE SAK   NV + F  +   I    +      S 
Sbjct: 125 CDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSK 184

Query: 191 VKRNMLRQKQESQGQRSGGCCS 212
                +R +  +Q     GCCS
Sbjct: 185 PPTVQIRGQPVNQ---QSGCCS 201

[Close]

BLAST of Carg24100 vs. Swiss-Prot
Match: sp|O49841|RAC2A_ARATH (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 1.9e-91
Identity = 169/211 (80.09%), Postives = 189/211 (89.57%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGS SGQ SGYDLSFK+LLIGDSGVGKSSLL +FIS+SV++L PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFR+LTSSYYRGAQGIILVYDVTRRETFTNL+DVW  E+ELY TNQ+
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CV+MLVGNKVDRESER VSRE+GIALA +L  +FLECSA+TR+NV +CFEELA+KIMEVP
Sbjct: 121 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           S LEE SS VKRN+L+QK E Q     GCCS
Sbjct: 181 SLLEEGSSAVKRNILKQKPEHQTNTQSGCCS 210

[Close]

BLAST of Carg24100 vs. Swiss-Prot
Match: sp|Q9SF92|RAC2B_ARATH (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.6e-80
Identity = 155/211 (73.46%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGS SGQ SGYDLSFK+LLIGDSGVGKSSLL +FIS+SV++L PTIGVDFKIKQ+ + GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQE+FR+LTSSY+RG+QGIILVYDVT+RETF NL D+WA E+ELY TN D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           C+KMLVGNKVDRESER VSRE+G+ALA  L  LF ECSA+TRENV  CFEELA+KIMEVP
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           S LEE SS VKR      +       G CCS
Sbjct: 181 SLLEEGSSSVKR------KPDYRAHQGRCCS 204

[Close]

BLAST of Carg24100 vs. Swiss-Prot
Match: sp|O23657|RABC1_ARATH (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 7.3e-75
Identity = 144/212 (67.92%), Postives = 171/212 (80.66%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGS SGQ   +D  FKVLLIGDSGVGKSSLL +F S + D+L+PTIGVDFK+K LTIG K
Sbjct: 1   MGSSSGQ-PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           +LKL IWDTAGQERFR+LTSSYYRGAQGII+VYDVTRR+TFTNL D+WA E++LY TNQD
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           C+KMLVGNKVD+ESERAVS+++GI  A + G LFLECSAKTR NV +CFEEL +KI+E P
Sbjct: 121 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SFLEERSSVVKRNMLRQK-QESQGQRSGGCCS 212
           S   E SS  K+N+ +Q   ++    S  CCS
Sbjct: 181 SLTAEGSSGGKKNIFKQNPAQTTSTSSSYCCS 211

[Close]

BLAST of Carg24100 vs. Swiss-Prot
Match: sp|Q6DHC1|RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.3e-50
Identity = 108/197 (54.82%), Postives = 136/197 (69.04%), Query Frame = 0


Query: 14  SFKVLLIGDSGVGKSSLLHTFISASVD-NLTPTIGVDFKIKQLTIGGKRLKLTIWDTAGQ 73
           + K+L+IG+SGVGKSSLL  F   + D  L  TIGVDFK+K + I G R KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQ 67

Query: 74  ERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQDCVKMLVGNKVDR 133
           ERFR+LT SYYRGAQG+ILVYDVT+R+TFT  L+ W NE+E Y T  D VKMLVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTKRDTFTK-LENWLNELETYCTRNDLVKMLVGNKIDK 127

Query: 134 ESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVPSFLEERSSVVKR 193
           ++ R V R +G+  A K   LF+E SAKTR+ V   FEEL  KI++ P   E  SS+   
Sbjct: 128 DN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWE--SSIQNH 187

Query: 194 NMLRQKQESQGQRSGGC 210
            +  Q  +++ QR G C
Sbjct: 188 GV--QLSDNEPQRQGAC 198

[Close]

BLAST of Carg24100 vs. Swiss-Prot
Match: sp|P36862|YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-49
Identity = 101/178 (56.74%), Postives = 127/178 (71.35%), Query Frame = 0


Query: 8   ISGYDLSFKVLLIGDSGVGKSSLLHTFISASV-DNLTPTIGVDFKIKQLTIGGKRLKLTI 67
           +  +D +FKVLL+GDSGVGKS +L  F S    ++ T TIGVDFK+K LT  GKR KLTI
Sbjct: 3   VDSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTI 62

Query: 68  WDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQDCVKMLV 127
           WDTAGQERFR+LTSSYYRGAQGII VYDVTRR+TF +L   W  E ++Y T +  +KM+V
Sbjct: 63  WDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVV 122

Query: 128 GNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVPSFLE 185
            NKVD  ++R VS E+G   A + G LF+E SA+    V + FEEL +KI++ P  LE
Sbjct: 123 ANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLE 180

[Close]

BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A1S3CID4|A0A1S3CID4_CUCME (ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103501313 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 7.8e-98
Identity = 187/211 (88.63%), Postives = 198/211 (93.84%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +   +LSFKVLLIGDS VGKSSLLHTFISAS+ +L+PTIGVDFKIKQLT+GGK
Sbjct: 1   MGSPSPHL---NLSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETF NLLDVWANEVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CVKMLVGNKVDRESER VSREDGIALANKLGSLF ECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           SFLEERSS+VKR++LRQKQE Q Q+SGGCCS
Sbjct: 181 SFLEERSSLVKRSILRQKQEGQAQQSGGCCS 208

[Close]

BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A0A0KAL0|A0A0A0KAL0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016920 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.0e-97
Identity = 187/211 (88.63%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGSPS  +   +LSFKVLLIGDS VGKSSLLHTFISAS+ +L+PTIGVDFKIKQLT+ GK
Sbjct: 1   MGSPSPHL---NLSFKVLLIGDSAVGKSSLLHTFISASLHDLSPTIGVDFKIKQLTVAGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETF NLLDVWANEVELYLT+QD
Sbjct: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFANLLDVWANEVELYLTDQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CVKMLVGNKVDRESER VSREDGIALANKLGSLF ECSAKTRENV KCFEELAIKIMEVP
Sbjct: 121 CVKMLVGNKVDRESERVVSREDGIALANKLGSLFFECSAKTRENVEKCFEELAIKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           SFLEERSS+VKRN+LRQKQE Q Q+SGGCCS
Sbjct: 181 SFLEERSSLVKRNILRQKQEGQAQQSGGCCS 208

[Close]

BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A2P5FVJ3|A0A2P5FVJ3_9ROSA (Small GTP-binding domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_025720 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 5.4e-91
Identity = 173/210 (82.38%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 1   MGSPSGQISGYDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGGK 60
           MGS SGQ   YDLSFK+LLIGDSGVGKSSLL +FIS S D L PTIGVDFKIK LT+GGK
Sbjct: 1   MGSSSGQSHSYDLSFKILLIGDSGVGKSSLLVSFISNSADGLAPTIGVDFKIKLLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQD 120
           +LKLTIWDTAGQERFR+LTSSYYRGAQGIILVYDVTRRETFTNL DVWA EVELY TNQD
Sbjct: 61  KLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQD 120

Query: 121 CVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEVP 180
           CVKMLVGNKVDRES+RAV+RE+GIALA +LGSLFLECSAKTRENV +CFEELA+KIMEVP
Sbjct: 121 CVKMLVGNKVDRESDRAVTREEGIALAKELGSLFLECSAKTRENVEQCFEELALKIMEVP 180

Query: 181 SFLEERSSVVKRNMLRQKQESQGQRSGGCC 211
           S LEE S+VVKRN+L+QKQ+ Q   SG CC
Sbjct: 181 SLLEEGSNVVKRNILKQKQDHQAPPSGSCC 210

[Close]

BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A0D2SGR0|A0A0D2SGR0_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G412800 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 7.1e-91
Identity = 174/212 (82.08%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MGSPSGQISG-YDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGG 60
           MGS SGQ SG YDLSFK+LLIGDSGVGKSSLL +FIS S ++L PTIGVDFKIK LT+GG
Sbjct: 1   MGSSSGQSSGSYDLSFKILLIGDSGVGKSSLLVSFISTSAEDLAPTIGVDFKIKLLTVGG 60

Query: 61  KRLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQ 120
           KRLKLTIWDTAGQERFR+LTSSYYRGAQGIILVYDVTRRETFTNL DVWA EVELY TNQ
Sbjct: 61  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 120

Query: 121 DCVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEV 180
           DCVKMLVGNKVDR+SERAV+RE+G+ALA +LGS+FLECSAKTRENV +CFEELA+KIME+
Sbjct: 121 DCVKMLVGNKVDRDSERAVTREEGVALAKELGSMFLECSAKTRENVEQCFEELALKIMEI 180

Query: 181 PSFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           PS LEE SSV KRNML+QK E Q    GGCCS
Sbjct: 181 PSLLEEGSSVGKRNMLKQKPEYQASPGGGCCS 212

[Close]

BLAST of Carg24100 vs. TrEMBL
Match: tr|A0A1U8IRL3|A0A1U8IRL3_GOSHI (ras-related protein RABC2a OS=Gossypium hirsutum OX=3635 GN=LOC107899493 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.2e-90
Identity = 174/212 (82.08%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MGSPSGQISG-YDLSFKVLLIGDSGVGKSSLLHTFISASVDNLTPTIGVDFKIKQLTIGG 60
           MGS SGQ SG YDLSFK+LLIGDSGVGKSSLL +FISAS ++L PTIGVDFKIK LT+GG
Sbjct: 1   MGSSSGQSSGSYDLSFKILLIGDSGVGKSSLLVSFISASAEDLAPTIGVDFKIKLLTVGG 60

Query: 61  KRLKLTIWDTAGQERFRSLTSSYYRGAQGIILVYDVTRRETFTNLLDVWANEVELYLTNQ 120
           KRLKLTIWDTAGQERFR+LTSSYYRGAQGIILVYDVTRRETFTNL DVWA EVELY TNQ
Sbjct: 61  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNQ 120

Query: 121 DCVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVAKCFEELAIKIMEV 180
           DCVKMLVGNKVDR+SER V+RE+G+ALA +LGS+FLECSAKTRENV +CFEELA+KIME+
Sbjct: 121 DCVKMLVGNKVDRDSERDVTREEGVALAKELGSMFLECSAKTRENVEQCFEELALKIMEI 180

Query: 181 PSFLEERSSVVKRNMLRQKQESQGQRSGGCCS 212
           PS LEE SSV KRNML+QK E Q    GGCCS
Sbjct: 181 PSLLEEGSSVGKRNMLKQKPEYQASPGGGCCS 212

The following BLAST results are available for this feature:

BLAST of Carg24100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925432.1	3.8e-112	100.00	ras-related protein RABC2a-like [Cucurbita moschata] >XP_023535218.1 ras-related...	[more]
XP_022973510.1	5.5e-111	99.05	ras-related protein RABC2a-like [Cucurbita maxima] >XP_022973511.1 ras-related p...	[more]
XP_022143972.1	9.1e-98	87.20	ras-related protein RABC2a-like [Momordica charantia]	[more]
XP_008463077.1	1.2e-97	88.63	PREDICTED: ras-related protein RABC2a-like [Cucumis melo]	[more]
XP_004138376.1	1.5e-97	88.63	PREDICTED: ras-related protein RABC2a-like [Cucumis sativus] >KGN45874.1 hypothe...	[more]

BLAST of Carg24100 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03530.1	1.1e-92	80.09	RAB GTPase homolog C2A	[more]
AT3G09910.1	1.4e-81	73.46	RAB GTPase homolog C2B	[more]
AT1G43890.1	4.1e-76	67.92	RAB GTPASE HOMOLOG B18	[more]
AT3G11730.1	3.8e-42	47.76	Ras-related small GTP-binding family protein	[more]
AT4G17530.1	3.6e-40	48.02	RAB GTPase homolog 1C	[more]

BLAST of Carg24100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49841\|RAC2A_ARATH	1.9e-91	80.09	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
sp\|Q9SF92\|RAC2B_ARATH	2.6e-80	73.46	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
sp\|O23657\|RABC1_ARATH	7.3e-75	67.92	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
sp\|Q6DHC1\|RB18B_DANRE	6.3e-50	54.82	Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1	[more]
sp\|P36862\|YPTV3_VOLCA	1.1e-49	56.74	GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1	[more]

BLAST of Carg24100 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CID4\|A0A1S3CID4_CUCME	7.8e-98	88.63	ras-related protein RABC2a-like OS=Cucumis melo OX=3656 GN=LOC103501313 PE=4 SV=...	[more]
tr\|A0A0A0KAL0\|A0A0A0KAL0_CUCSA	1.0e-97	88.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016920 PE=4 SV=1	[more]
tr\|A0A2P5FVJ3\|A0A2P5FVJ3_9ROSA	5.4e-91	82.38	Small GTP-binding domain containing protein OS=Trema orientalis OX=63057 GN=TorR...	[more]
tr\|A0A0D2SGR0\|A0A0D2SGR0_GOSRA	7.1e-91	82.08	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G412800 PE=4 ...	[more]
tr\|A0A1U8IRL3\|A0A1U8IRL3_GOSHI	1.2e-90	82.08	ras-related protein RABC2a OS=Gossypium hirsutum OX=3635 GN=LOC107899493 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24100-RA	Carg24100-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 119..132 score: 44.01 coord: 55..77 score: 51.04 coord: 154..176 score: 41.6 coord: 37..53 score: 30.18 coord: 15..36 score: 50.83
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..180 e-value: 0.0048 score: -0.5
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 20..208 e-value: 9.3E-4 score: 5.1
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 17..180 e-value: 1.3E-12 score: 41.6
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 12..179 e-value: 3.0E-29 score: 113.1
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 15..179 e-value: 9.6E-91 score: 317.4
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 9..210 e-value: 1.4E-61 score: 209.3
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 4..206
None	No IPR available	PANTHER	PTHR24073:SF579	RAS-RELATED PROTEIN RABC2A-RELATED	coord: 4..206
None	No IPR available	PROSITE	PS51419	RAB	coord: 10..210 score: 32.023
None	No IPR available	CDD	cd01863	Rab18	coord: 15..176 e-value: 6.80639E-93 score: 270.721
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..171 e-value: 6.1E-28 score: 95.6
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 16..177 e-value: 1.3E-53 score: 180.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..193

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24100	Csa6G016920	Cucumber (Chinese Long) v2	carcuB0699
Carg24100	MELO3C025015	Melon (DHL92) v3.5.1	carmeB0678
Carg24100	ClCG08G002380	Watermelon (Charleston Gray)	carwcgB0653
Carg24100	CSPI06G02490	Wild cucumber (PI 183967)	carcpiB0711
Carg24100	Cucsa.365960	Cucumber (Gy14) v1	carcgyB0757
Carg24100	CmaCh09G012770	Cucurbita maxima (Rimu)	carcmaB0953
Carg24100	CmoCh09G012320	Cucurbita moschata (Rifu)	carcmoB0929
Carg24100	Lsi08G002190	Bottle gourd (USVL1VR-Ls)	carlsiB617
Carg24100	Cp4.1LG06g09580	Cucurbita pepo (Zucchini)	carcpeB0954
Carg24100	CsGy6G002540	Cucumber (Gy14) v2	carcgybB0675
Carg24100	MELO3C025015.2	Melon (DHL92) v3.6.1	carmedB0690
Carg24100	CsaV3_6G002680	Cucumber (Chinese Long) v3	carcucB0713
Carg24100	Cla97C08G146400	Watermelon (97103) v2	carwmbB0703
Carg24100	Bhi04G001774	Wax gourd	carwgoB0794

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None