Carg23882 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23882
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ribosomal RNA small subunit methyltransferase A
Location	Cucurbita_argyrosperma_scaffold_252 : 27950 .. 33767 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCACCGCCACTTCCAAATCCCTTCCTCCCGCCAATTTCACCAACGTTCTCTCCGCAGAGCCCTAAATTCTGTTTTCCGGCGACTACTCCCACCGTCGGCGCACGGCGAGCTACTCCATTCGTAGCTTGTTCTTCTGCTACTGTGAGAAATGGGGGAAGAGTTAATCCAGATGATTATCATTCCACTCTAAGAGCCCTCAATTCCAAAGGCCGCATGCCAAGAAAATCTCTCGGCCAGGTCTGTTCTCCAACACTTCGTTTATCTGATTATCTCCTAGTCATTTAAGTGATGATGTATGATGCTAATTTCTTTTAGCTGCGTTTGGATTTCTGGGAAATTGTGAAATGTGTATGGTAAATTAGTAACGGCCAGTTTATAATTTGTGTGGAAATCTTGATATAGGAAATGTAGAGTCATTTTCTCTATTCGATTACATGCTGGAATTCAGGAGGAAGCCTTTGTTCTGGATAGCATTTAAGAATTGAAAGGACACCAAATATCTGGATAATTTTGGAGGGATCTATTCTTTATGTATTGATGTTTTTCTTCACGCAAGTCATTAGGAAATCACTTTTTTTGATGATTAGTATTGAGGTTTCATTTCCTGCCCAAAACTAGGGAGACAACGAGGTTTGAAGATTTAAATACGGGGATTGAAGATGGGACATTCGAGAGTATTATTAATAAACTGCAAGTTTGATCTGATCCTCTCTCAAGGATTAGTAGTCATTGGTAGGATTGAACCGAATTCGAAGTAGCCTATGATTTCCTTCCTTCACTTGTTGGCATCTTTTATGTTTGCAGCATTATATGTTGAATTCTTCGATTAACGAGCAGCTGGCTGCTGCAGCTAATGTTAAAGAGGGCGACGTGGTATTGGAAATTGGGCCCGGAACTGGATCGTTAACCAGTGTCCTTATTGACTTAGGTGCCACAGTGCTTGCAGTTGAGAAGGTTGGTTTTTTGTTTTCTGTCTTATGATTTGATTTCTGTAAGGTTTCGATCCACGAATCCAGATGGGAGAAATGGATGTCGAAGTTAACTATGCAAATAAAGCATTTCTAACATATACCTTAATGTTGGGAACGTTTGAATCTTCGAATGTAGATTGATTGTTTGACCTGTTTAGTCTTTTAAAGGACCCTGTCCTCAGTGTAACCAAGAACTTGAATTTTTGGTTCTCAAATGCAAGTTTAACTTTTACTTCAACTATCCACTCTGGTAAATAATATGTCTTATTTTGGATTTACTGTTTGGGTATAGGATTCATATATGGCTGCTCTTGTAGATGAAAGATTTGCTGGCACAAACAGATTGAAGGTAAGTTAAATAATTTTTTTTGGGGATAACATAGTAGGATTGCTGATCAAAATTCTGTAAGGACAACAACATCTTACATGACTAAGAAGATCACTCCTAGAAATTTGTATTTCATTTATTTTTTTGTTAAATTCTCACAATGAAGTCAATTAAGAAAACTACTGATAAGATTGCTGGCCATGACTAAGCCAATCTTTTATGCAACACCTGAAGTTGGATCTTTAAATGTTCTCCATTCACCTAGCACACTTTTATAATTCTTTCTTGTAACAGCCCAAACCCACCACTAGCAGATATTGTTCTCTTTGGGCTTTCCCTTCCGGGCTTCCCCTCAAGGTTTTAAAGCGCATCTACTAAGGAGAGATTTCTACACCAAAGAATGTTTTGTTCCCTTCTCCAACCGACGTGGGATCTCACAATAATATTTGCTAGCAGTGGACTTGGGCTTGGGCTGTTACAAATGGTATCAGAGCTAGACATTGGGCGGTGTGCCGTTGAGGATGCTGGCTCCCAAGGGGGGTGGATTGTGAGTTCCCACATCGGTTGGAGAGGGGAACGAAACATTCCTTGTAAAGGTGTAGAAAACTCTCCCTAGTAAATGCGTTTTAAAACCTTGAGGGAAAATCCAAAGATGACAATATCTGTTAGCGGTGGGCTTGGGCTGTTACATTTTTCATATCACTAAGAAATGCTTCTCGTATGTTTGCTTAGTAGAAGTTAATAAAATTGATGGTGCTGGGAATAAGATATTTGTTCTTAGTTCTATGTTTATTACAAGCATTTTTTGAATATACTGGATTCATACATGGTCAATATAAGTTTTTCCACAGTGTAGGCAATGTTGTGACTATTCCAACTGAATCATGCAGGTTCTAAACGAGGACTTCACTAAATGTCACGTGAGTTCACATATGTCGTCATTGCTCAAAAGTATTGAGTTGTCTGATTCAAAATCACAACCTGCAAAAGTAAGTACATCTGCTAGATATGCTTCTTAACTTATCACATTTGATTATTTTGTATCAGAATATGCCTTGTGCAGTAACCATTTTCCTGTGGTCTTTTTGTTATGCAATGGTTCTCAAGTTCTTGCATATTTTTACATAAGTTCAAGAATGAATGCTTAAGCTCCATAACTTTCAATGATGTCATGAAGTTTTTTGTTTTGCTCATAAAATGTTTGTCATGTTCGTATACGTTGTTCGGGAAACTCAAGCATGTTTTAGTTTATGCTCCAGAAAGTGTATCCATTTGAAGTGAACTATTTTATTCTAAATTAGCTTACTTGAGTTTCTTGTCTGCAGGTAGTCTCCAACATACCATTCAATATAAGTACAGATATAATTAAACAACTTCTTCCAATGGGAGACATTTTTTCAGAAGTTGTTCTTTTACTCCAGGTAATATTGCTTTTTGAAGAACAAGCTCTGGATATGATTGGATCCTTGTTATTTGTGGTTAATACTTTTTATCTGTTTATTTTTAAAACCTATTTTTGTCATTCAATATAGGAAAAAAAAAAAAAAAAAACAACATTTCAAACTTTCAAGTTTCAATTATGTGTTTGAAGGGGTAATTGCTGCTTTTTTAGTCAGGCTTTATACAGTATTTCTGTAATCAGCTATGAGATTCTTTTGAAAATTTATAGATGATATCAAAGGCAAGATACCGTGCGCATACATGTATAAACTATGATAGACTTTCAGATTATTTTGTATTCTAGATTATTCGGCTGGACTCGCACTATTTAAACCATGGATATCATCAGTCATTTTCACAGCTACCATGAATTTGTGTTTAAACTATCAGGAGGAGACAGCTCTACGCTTAGTGGATTCATCTTCGGGAACATCTGAAAAACGCCCCATCAATGTATTTGTGAACTTTTATTCAGGTATCCTACTAGTTCTACTCCTTCCAAATTGAAACGTCGATGTTGTTTGATATGTGCTGTACATGTTTTATAGCCATCTTCTAAACTGATTATAGAGATTGTTCACAATTTTGTATTTTACAAAATTTATGAATGCATTAAGATCTCCATCTTCATTTGGTTGAAGACTATGAAATGATTGATTACATGATTCAAATTACTAAACCTTAAATACCTACGTAATAGATTGTTTTGCTACATTATCTTACTGAAGTTGGAGAAAAATTTCACTGCTATTATTTTGTTTGATGGATCATAATGATCTAAATATACAAAATTTTAAGCTTTGTTGGTAACGTACAAATTTTTATGAAGTTATTTGTAAGATTTCTCTTCCATTCCTTTATAGATCCTGAATTCAAATTTAAAGTTCCAAGGACAAACTTTTTTCCTCAGCCTAATGTAAGTAATTTCTCATTTATGAGATATCTTTTTTTCTTTTTCTGTTTATACTTTCAACCCCATCCATGATTTGATTCTTCTGGAAAATTTTGGTTTCTTAAAGAAAAGGCTATTAAATGGTTGAAGTGATATTTTCATTTGTTTACGATTTTATAGGTTGAAGCAGCTGTTGTATCTTTCAAGCTGAAGCAAGCTGCAGACTATCCTGCAGTTTCCTCCATCAAGAGCTTCTTCTCAATGGTTATATTTCCTTCATGGCTTCGTTAACATACACAAATTTTGCTCTTAATTCATACATACTTCTTCATTCTTGTGAAAAAACTGGGCTCAACCAAATACTTAGTTTCATAATACAAGCTATATCATTTTCCTTGATCATTGCTATTGCATAAAATAGTCTACAGCATAGAGCATGTTGCTATACTATAACGCTGTTTTCTCCCGTCTTCCTTGGCCATCTTGATCTGGTTATATCAAGAAAAAAGATCCATAAAGGACAGCATCCCATATCTAGCGGTGTTGTCCACTAGAACATAGATGTGAGGAATCTTCAGGATTATTAGGAGGGAGTCCCACATTGGCTAATTTTTGGCTAATTTAGGGAATGATCATGATGAATTTATAAGTAAGGAATACATCTCCATTGGTACGAGACCTTTTGGGAAAACCAAAAGCAAAACCACGAGAGCTTATTCTCAAAGTGGACAATATCATACCATTGTAGAGGTTGTGATTCCTAACATGGTATCAAAGTCATACCCTTAACTTAGCCATGTCAATAGAATCCTCAAATGTCGAACAAAGAAGTTGAGAGCCTCAAAGATAGTCAAAAGTGGCTCAAGTATCAAACAAAGGGTGTACTCTGTTCAAAAACTCTAGAGAAAGAGTCGAGCCTCGATTAAGGGGAGACTGTTCGAGGGCTCCATAGGCCTTAGGGGAGACTCTATAGTATACTTTGTTTGAGGAGAGCGATTGTTGAGGATTGTTGGGAGGGAGTCCCACGTTTGCTAATTTAGGGAATGATCATGTGTTTATAAGTAAGGAATACATCTCCATTGGTATGAGACATTTTGGGGAAACCAAAAGCAAAACCATAAAACTTATGCTCAAAGTGAATAGTATTATACCACTGTGGAGAGTCGTGATTCCTAACAAGGAAAAGGAAAATCTTCTTTTGGGCTTGCCTTAGGCGTCTTTGGACTCACGGAACCATCTTTCAAATTGAGAGAAAAACCGTTCTCAAAGCGGTCAAACATGGCGGGCTCAGGCTCCAGCTCCGCACACCTGCCGACACCTTTCGAACTCCTTTCAAGTGTGCGCTTTAGTTTTCGTATTTCACACTATGAAATCTTAAGTAATGAACAGCACTAATTTGTTACAGCATCTAGGTTTGTTCGTTAATGTATCCACTACTATCCTTTAACAGGCTTTGTTTTGTTCATGGATATAGGTTAACTCAGCATTCAATGGCAAGCGTAAAATGTTACGAAAATCGCTTCAACACATTAGCACAGCCCTCGAGATAGAAAGAGCTTTGGAAGATTGTAGCCTTCCAACAACTGTAAGGCATATCTCTGCTCTGCAAATCTTCTAGTTTCCACAGAATCTATTAACTGTTTTCTTCATATTTGGTTTGTTTGCAGTCAAGACCAGAGGAGCTAAGCTTGAATGATTTTGTTAGGTTACATAATTTGATTGTGAAGCAGTAATACCTGAGGCATTAACTGGAAGAGATACTCAAATCCAAGTTCCTTCAGGATGGCCTGTAAAGGAGGTTGGAAGGAAGAAACTGAAGGTGTAAAAGGAGAAGTGGACTGAGAAGGAAAAGGAAGCTTCCACAAGCAGCTTGACAAGAACCAATGCAAGCTAGGTAAGTGATTTATAACCAACTTTGTAGTCACTGTTCATTTTAGAACGAATCCATGCCTTTTCATGCTGGTATGATGTGATTCCAGTTATATTAGTGACCAACGACGACCATTAGTAAAATTCTAAATTATTACATCTGTTTGTTTGGTTGCTCAAGTCCATTTATGGCCTCGTTTATCTTTAGCTCACGAGTTCATTGAGCAGTCATTCAAAGTTCTTGATGATTCAGATTGTTTCCTCTTAAAGGGGCGTTTGTTTTGAAGAAAAGAAGAGGGAAATTTTTATTGC

mRNA sequence

ATGGCAGCACCGCCACTTCCAAATCCCTTCCTCCCGCCAATTTCACCAACGTTCTCTCCGCAGAGCCCTAAATTCTGTTTTCCGGCGACTACTCCCACCGTCGGCGCACGGCGAGCTACTCCATTCGTAGCTTGTTCTTCTGCTACTGTGAGAAATGGGGGAAGAGTTAATCCAGATGATTATCATTCCACTCTAAGAGCCCTCAATTCCAAAGGCCGCATGCCAAGAAAATCTCTCGGCCAGCATTATATGTTGAATTCTTCGATTAACGAGCAGCTGGCTGCTGCAGCTAATGTTAAAGAGGGCGACGTGGTATTGGAAATTGGGCCCGGAACTGGATCGTTAACCAGTGTCCTTATTGACTTAGGTGCCACAGTGCTTGCAGTTGAGAAGGATTCATATATGGCTGCTCTTGTAGATGAAAGATTTGCTGGCACAAACAGATTGAAGGTTCTAAACGAGGACTTCACTAAATGTCACGTGAGTTCACATATGTCGTCATTGCTCAAAAGTATTGAGTTGTCTGATTCAAAATCACAACCTGCAAAAGTAGTCTCCAACATACCATTCAATATAAGTACAGATATAATTAAACAACTTCTTCCAATGGGAGACATTTTTTCAGAAGTTGTTCTTTTACTCCAGGAGGAGACAGCTCTACGCTTAGTGGATTCATCTTCGGGAACATCTGAAAAACGCCCCATCAATGTATTTGTGAACTTTTATTCAGATCCTGAATTCAAATTTAAAGTTCCAAGGACAAACTTTTTTCCTCAGCCTAATGTTGAAGCAGCTGTTGTATCTTTCAAGCTGAAGCAAGCTGCAGACTATCCTGCAGTTTCCTCCATCAAGAGCTTCTTCTCAATGGTTAACTCAGCATTCAATGGCAAGCGTAAAATGTTACGAAAATCGCTTCAACACATTAGCACAGCCCTCGAGATAGAAAGAGCTTTGGAAGATTGTAGCCTTCCAACAACTTCAAGACCAGAGGAGCTAAGCTTGAATGATTTTGTTAGGTTACATAATTTGATTGTGAAGCAGTAATACCTGAGGCATTAACTGGAAGAGATACTCAAATCCAAGTTCCTTCAGGATGGCCTGTAAAGGAGGTTGGAAGGAAGAAACTGAAGGTGTAAAAGGAGAAGTGGACTGAGAAGGAAAAGGAAGCTTCCACAAGCAGCTTGACAAGAACCAATGCAAGCTAGGTAAGTGATTTATAACCAACTTTGTAGTCACTGTTCATTTTAGAACGAATCCATGCCTTTTCATGCTGGTATGATGTGATTCCAGTTATATTAGTGACCAACGACGACCATTAGTAAAATTCTAAATTATTACATCTGTTTGTTTGGTTGCTCAAGTCCATTTATGGCCTCGTTTATCTTTAGCTCACGAGTTCATTGAGCAGTCATTCAAAGTTCTTGATGATTCAGATTGTTTCCTCTTAAAGGGGCGTTTGTTTTGAAGAAAAGAAGAGGGAAATTTTTATTGC

Coding sequence (CDS)

ATGGCAGCACCGCCACTTCCAAATCCCTTCCTCCCGCCAATTTCACCAACGTTCTCTCCGCAGAGCCCTAAATTCTGTTTTCCGGCGACTACTCCCACCGTCGGCGCACGGCGAGCTACTCCATTCGTAGCTTGTTCTTCTGCTACTGTGAGAAATGGGGGAAGAGTTAATCCAGATGATTATCATTCCACTCTAAGAGCCCTCAATTCCAAAGGCCGCATGCCAAGAAAATCTCTCGGCCAGCATTATATGTTGAATTCTTCGATTAACGAGCAGCTGGCTGCTGCAGCTAATGTTAAAGAGGGCGACGTGGTATTGGAAATTGGGCCCGGAACTGGATCGTTAACCAGTGTCCTTATTGACTTAGGTGCCACAGTGCTTGCAGTTGAGAAGGATTCATATATGGCTGCTCTTGTAGATGAAAGATTTGCTGGCACAAACAGATTGAAGGTTCTAAACGAGGACTTCACTAAATGTCACGTGAGTTCACATATGTCGTCATTGCTCAAAAGTATTGAGTTGTCTGATTCAAAATCACAACCTGCAAAAGTAGTCTCCAACATACCATTCAATATAAGTACAGATATAATTAAACAACTTCTTCCAATGGGAGACATTTTTTCAGAAGTTGTTCTTTTACTCCAGGAGGAGACAGCTCTACGCTTAGTGGATTCATCTTCGGGAACATCTGAAAAACGCCCCATCAATGTATTTGTGAACTTTTATTCAGATCCTGAATTCAAATTTAAAGTTCCAAGGACAAACTTTTTTCCTCAGCCTAATGTTGAAGCAGCTGTTGTATCTTTCAAGCTGAAGCAAGCTGCAGACTATCCTGCAGTTTCCTCCATCAAGAGCTTCTTCTCAATGGTTAACTCAGCATTCAATGGCAAGCGTAAAATGTTACGAAAATCGCTTCAACACATTAGCACAGCCCTCGAGATAGAAAGAGCTTTGGAAGATTGTAGCCTTCCAACAACTTCAAGACCAGAGGAGCTAAGCTTGAATGATTTTGTTAGGTTACATAATTTGATTGTGAAGCAGTAA

Protein sequence

MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDDYHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLIDLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVNFYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKMLRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ

Homology

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BLAST of Carg23882 vs. NCBI nr
Match: XP_022942262.1 (ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita moschata])

HSP 1 Score: 662.9 bits (1709), Expect = 5.9e-187
Identity = 346/347 (99.71%), Postives = 347/347 (100.00%), Query Frame = 0


Query: 1   MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD 60
           MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD
Sbjct: 1   MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD 60

Query: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120
           YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI
Sbjct: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120

Query: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180
           DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ
Sbjct: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180

Query: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240
           PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN
Sbjct: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240

Query: 241 FYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300
           FYSDPEFKFKVPRTNFFPQPNV+AAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM
Sbjct: 241 FYSDPEFKFKVPRTNFFPQPNVDAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300

Query: 301 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ 348
           LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ
Sbjct: 301 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ 347

[Close]

BLAST of Carg23882 vs. NCBI nr
Match: XP_023538971.1 (ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 645.2 bits (1663), Expect = 1.3e-181
Identity = 338/347 (97.41%), Postives = 342/347 (98.56%), Query Frame = 0


Query: 1   MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD 60
           MAAPPLPN FLPPISPT SPQSPKFCFPATTPTV ARRATPFV+CS+ATVR GGRVNPDD
Sbjct: 1   MAAPPLPNLFLPPISPTSSPQSPKFCFPATTPTVSARRATPFVSCSAATVRKGGRVNPDD 60

Query: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120
           YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI
Sbjct: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120

Query: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180
           DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ
Sbjct: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180

Query: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240
           PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN
Sbjct: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240

Query: 241 FYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300
           FYSDPEFKFKVPRTNFFPQPNV+AAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM
Sbjct: 241 FYSDPEFKFKVPRTNFFPQPNVDAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300

Query: 301 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ 348
           LRKSLQHISTALEIERALEDCSLP TSRPEELSL+DFVRLHNLIVKQ
Sbjct: 301 LRKSLQHISTALEIERALEDCSLPATSRPEELSLDDFVRLHNLIVKQ 347

[Close]

BLAST of Carg23882 vs. NCBI nr
Match: XP_022974171.1 (ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 643.3 bits (1658), Expect = 4.8e-181
Identity = 337/347 (97.12%), Postives = 342/347 (98.56%), Query Frame = 0


Query: 1   MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD 60
           MAAPPLPN FLPPISPT SPQSPKFCFPATTPTVGARRATPFV+CS+ATVR GGRVNPDD
Sbjct: 1   MAAPPLPNLFLPPISPTNSPQSPKFCFPATTPTVGARRATPFVSCSAATVRKGGRVNPDD 60

Query: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120
           YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI
Sbjct: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120

Query: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180
           DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCH+SSHMSSLLKSIELSDSKSQ
Sbjct: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHMSSHMSSLLKSIELSDSKSQ 180

Query: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240
           PAKVVSNIPFNISTDIIK LLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN
Sbjct: 181 PAKVVSNIPFNISTDIIKLLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240

Query: 241 FYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300
           FYSDPEFKFKVPRTNFFPQPNV+AAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM
Sbjct: 241 FYSDPEFKFKVPRTNFFPQPNVDAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300

Query: 301 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ 348
           LRKSLQHISTALEIERALEDCSLP TSRPEELSL+DFVRLHNLIVKQ
Sbjct: 301 LRKSLQHISTALEIERALEDCSLPATSRPEELSLDDFVRLHNLIVKQ 347

[Close]

BLAST of Carg23882 vs. NCBI nr
Match: XP_022147255.1 (ribosomal RNA small subunit methyltransferase, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 576.6 bits (1485), Expect = 5.6e-161
Identity = 302/347 (87.03%), Postives = 322/347 (92.80%), Query Frame = 0


Query: 1   MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD 60
           MAAP LPN FLPPISP  S QSPKF FP ++ T GARR TPFVACS+ATVR+GGRVNPDD
Sbjct: 1   MAAPSLPNLFLPPISPVSSTQSPKFYFPVSSATAGARRETPFVACSAATVRSGGRVNPDD 60

Query: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120
           YHSTLRALNSKGRMPRKSLGQHYMLNSSIN+QLAAAANVKEGDVVLEIGPGTGSLT++LI
Sbjct: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINQQLAAAANVKEGDVVLEIGPGTGSLTNILI 120

Query: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180
           + GATVLAVEKD YMAA+VDERFA TNRLKVLNEDF KCHVSSHM SLLK +ELSDSKSQ
Sbjct: 121 NSGATVLAVEKDPYMAAVVDERFASTNRLKVLNEDFVKCHVSSHMMSLLKGMELSDSKSQ 180

Query: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240
           PAKVVSNIPFNISTD+IKQLLPMG+IFSEVVLLLQEETALRLV++S  TSE RPIN+FVN
Sbjct: 181 PAKVVSNIPFNISTDVIKQLLPMGEIFSEVVLLLQEETALRLVEASLRTSEYRPINIFVN 240

Query: 241 FYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300
           FYSDPEFKFKVPRT+FFPQPNV+AAVVSFKLKQAADYPAVSS KSFFSMVNSAFNGKRKM
Sbjct: 241 FYSDPEFKFKVPRTDFFPQPNVDAAVVSFKLKQAADYPAVSSTKSFFSMVNSAFNGKRKM 300

Query: 301 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ 348
           LRKSLQHI T+LEIERALE  SLP TSRPEELSL DFV+LHNLIV+Q
Sbjct: 301 LRKSLQHICTSLEIERALEYSSLPATSRPEELSLEDFVKLHNLIVRQ 347

[Close]

BLAST of Carg23882 vs. NCBI nr
Match: XP_004133887.1 (PREDICTED: probable dimethyladenosine transferase [Cucumis sativus] >KGN56557.1 hypothetical protein Csa_3G124770 [Cucumis sativus])

HSP 1 Score: 560.5 bits (1443), Expect = 4.1e-156
Identity = 297/346 (85.84%), Postives = 318/346 (91.91%), Query Frame = 0


Query: 1   MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD 60
           MAA PLPNPFLPP SPT S QSP F FP +T  VG+R ATPFV+CS+A+VR G  VNPDD
Sbjct: 1   MAASPLPNPFLPPFSPTSSTQSPNFYFPPSTSVVGSRWATPFVSCSAASVRVGEGVNPDD 60

Query: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120
           YHST+RALNSKGR+PRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLT+VLI
Sbjct: 61  YHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNVLI 120

Query: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180
           + GATVLAVEKDSYMA LVDERFA TNRLKVLNEDF KC+VSSHM SLLKSIELS+++SQ
Sbjct: 121 NSGATVLAVEKDSYMAGLVDERFANTNRLKVLNEDFVKCNVSSHMMSLLKSIELSEARSQ 180

Query: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240
           PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEE ALRLV++S  TSE RPINVFVN
Sbjct: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRTSEYRPINVFVN 240

Query: 241 FYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300
           FYSDPE KFKVPRTNFFPQPNV+AAVVSFKLK+AADYPAVSS KSFFSMVNSAFNGKRKM
Sbjct: 241 FYSDPELKFKVPRTNFFPQPNVDAAVVSFKLKRAADYPAVSSTKSFFSMVNSAFNGKRKM 300

Query: 301 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVK 347
           LRKSLQHI T+LEIE+ALED SL  TSRPEELSL+DFV+LHNLIVK
Sbjct: 301 LRKSLQHICTSLEIEKALEDSSLLPTSRPEELSLDDFVKLHNLIVK 346

[Close]

BLAST of Carg23882 vs. TAIR10
Match: AT1G01860.1 (Ribosomal RNA adenine dimethylase family protein)

HSP 1 Score: 415.6 bits (1067), Expect = 3.0e-116
Identity = 212/312 (67.95%), Postives = 259/312 (83.01%), Query Frame = 0


Query: 36  ARRATPFVACSSATVRNGGRVNPDDYHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAA 95
           +RR T  V+C        G+ +PDDYHSTL++LNS+GR PRKSLGQHYMLNS IN+QLA+
Sbjct: 40  SRRRTVKVSC--------GKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLAS 99

Query: 96  AANVKEGDVVLEIGPGTGSLTSVLIDLGATVLAVEKDSYMAALVDERFAGTNRLKVLNED 155
           AA+VKEGD VLEIGPGTGSLT+VLI+LGATVLA+EKD +M  LV ERFAG+++ KVL ED
Sbjct: 100 AADVKEGDFVLEIGPGTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQED 159

Query: 156 FTKCHVSSHMSSLLKSIELSDSKSQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQ 215
           F KCH+ SHM S+L++  LS   S  AKVVSN+PFNISTD++K LLPMGDIFS+VVLLLQ
Sbjct: 160 FVKCHIRSHMLSILETRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQ 219

Query: 216 EETALRLVDSSSGTSEKRPINVFVNFYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAA 275
           +E ALRLV+ +  TSE RPIN+ +NFYS+PE+ F+VPR NFFPQP V+AAVV+FKLK   
Sbjct: 220 DEAALRLVEPALRTSEYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPR 279

Query: 276 DYPAVSSIKSFFSMVNSAFNGKRKMLRKSLQHISTALEIERALEDCSLPTTSRPEELSLN 335
           DYP VSS K+FFS+VNSAFNGKRKMLRKSLQHIS++ +IE+AL    LP TSRPEEL+L+
Sbjct: 280 DYPDVSSTKNFFSLVNSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLD 339

Query: 336 DFVRLHNLIVKQ 348
           DFV+LHN+I ++
Sbjct: 340 DFVKLHNVIARE 343

[Close]

BLAST of Carg23882 vs. TAIR10
Match: AT2G47420.1 (Ribosomal RNA adenine dimethylase family protein)

HSP 1 Score: 95.1 bits (235), Expect = 8.9e-20
Identity = 83/270 (30.74%), Postives = 130/270 (48.15%), Query Frame = 0


Query: 53  GGRVNPDDYHSTLRALNSK---GRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIG 112
           GG++  +   ++ RA ++    G    KS GQH + N  + + +   A +K  DV+LEIG
Sbjct: 3   GGKIRKEKPKASNRAPSNHYQGGISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIG 62

Query: 113 PGTGSLTSVLIDLGATVLAVEKDSYMAALVDERFAGT---NRLKVLNEDFTKCHVSSHMS 172
           PGTG+LT  L++ G  V+AVE DS M   +  RF GT   NRLKV+  D  K        
Sbjct: 63  PGTGNLTKKLLEAGKEVIAVELDSRMVLELQRRFQGTPFSNRLKVIQGDVLKTE------ 122

Query: 173 SLLKSIELSDSKSQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSS 232
             L   ++          V+NIP+ IS+ +  +LL     F   V++ Q E A+RLV + 
Sbjct: 123 --LPRFDI---------CVANIPYQISSPLTFKLLFHPTSFRCAVIMYQREFAMRLV-AQ 182

Query: 233 SGTSEKRPINVFVNFYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSF 292
            G +    ++V    Y+      KV + NF P P V+++VV  + ++    P V+  K +
Sbjct: 183 PGDNLYCRLSVNTQLYARVSHLLKVGKNNFRPPPKVDSSVVRIEPRRPG--PQVNK-KEW 242

Query: 293 FSMVNSAFNGKRKMLRKSLQHISTALEIER 317
              +   F  K K L    +  S    +E+
Sbjct: 243 DGFLRVCFIRKNKTLGSIFKQKSVLSMLEK 251

[Close]

BLAST of Carg23882 vs. TAIR10
Match: AT5G66360.2 (Ribosomal RNA adenine dimethylase family protein)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-19
Identity = 68/242 (28.10%), Postives = 123/242 (50.83%), Query Frame = 0


Query: 77  KSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLIDLGATVLAVEKDSYMA 136
           KS GQH + N+ I + +  +++++  D VLEIGPGTG+LT  L++    V+AVE D  M 
Sbjct: 65  KSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVELDKRMV 124

Query: 137 ALVDERFAG---TNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAKVVSNIPFNIS 196
            ++ +R +     ++L ++ +D  K     H                   VV+NIP+NIS
Sbjct: 125 EILRKRVSDHGFADKLTIIQKDVLKTDF-PHFD----------------LVVANIPYNIS 184

Query: 197 TDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVNFYSDPEFKFKVPR 256
           + ++ +L+   + F    LLLQ+E + RL+ ++ G S+   + V V   +D +F   V +
Sbjct: 185 SPLVAKLVYGSNTFRSATLLLQKEFSRRLL-ANPGDSDFNRLAVNVKLVADVKFVMDVSK 244

Query: 257 TNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKMLRKSLQHISTALE 316
             F P P V+++V+    K+    P V +++ + +   + F  K K L    +     +E
Sbjct: 245 REFVPPPKVDSSVIRITPKEI--IPDV-NVQEWLAFTRTCFGKKNKTLGSMFRQKKKVME 285

[Close]

BLAST of Carg23882 vs. Swiss-Prot
Match: sp|O65090|DIM1C_ARATH (Ribosomal RNA small subunit methyltransferase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PFC1 PE=2 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 5.4e-115
Identity = 212/312 (67.95%), Postives = 259/312 (83.01%), Query Frame = 0


Query: 36  ARRATPFVACSSATVRNGGRVNPDDYHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAA 95
           +RR T  V+C        G+ +PDDYHSTL++LNS+GR PRKSLGQHYMLNS IN+QLA+
Sbjct: 40  SRRRTVKVSC--------GKSSPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQLAS 99

Query: 96  AANVKEGDVVLEIGPGTGSLTSVLIDLGATVLAVEKDSYMAALVDERFAGTNRLKVLNED 155
           AA+VKEGD VLEIGPGTGSLT+VLI+LGATVLA+EKD +M  LV ERFAG+++ KVL ED
Sbjct: 100 AADVKEGDFVLEIGPGTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVLQED 159

Query: 156 FTKCHVSSHMSSLLKSIELSDSKSQPAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQ 215
           F KCH+ SHM S+L++  LS   S  AKVVSN+PFNISTD++K LLPMGDIFS+VVLLLQ
Sbjct: 160 FVKCHIRSHMLSILETRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVLLLQ 219

Query: 216 EETALRLVDSSSGTSEKRPINVFVNFYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAA 275
           +E ALRLV+ +  TSE RPIN+ +NFYS+PE+ F+VPR NFFPQP V+AAVV+FKLK   
Sbjct: 220 DEAALRLVEPALRTSEYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLKHPR 279

Query: 276 DYPAVSSIKSFFSMVNSAFNGKRKMLRKSLQHISTALEIERALEDCSLPTTSRPEELSLN 335
           DYP VSS K+FFS+VNSAFNGKRKMLRKSLQHIS++ +IE+AL    LP TSRPEEL+L+
Sbjct: 280 DYPDVSSTKNFFSLVNSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEELTLD 339

Query: 336 DFVRLHNLIVKQ 348
           DFV+LHN+I ++
Sbjct: 340 DFVKLHNVIARE 343

[Close]

BLAST of Carg23882 vs. Swiss-Prot
Match: sp|Q6ME80|RSMA_PARUW (Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=rsmA PE=3 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-39
Identity = 95/275 (34.55%), Postives = 162/275 (58.91%), Query Frame = 0


Query: 68  LNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLIDLGATVL 127
           LN  G  P+K L Q+++++ +I  ++  A++V+ G++VLEIGPG GSLT  ++++ A V+
Sbjct: 13  LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72

Query: 128 AVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAKVVSN 187
           AVEKD  +A  +      + +L++  ED     V   + S L+         Q AKV++N
Sbjct: 73  AVEKDFVLARELKRFQTPSKQLEIFCEDILMFSVEEELQSRLRD-------DQKAKVIAN 132

Query: 188 IPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVNFYSDPEF 247
           +P++++T I+ +++    +FS + +++QEE A R+  +  G S+     +F+NFYS P +
Sbjct: 133 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMT-ALPGQSDYSSFTIFLNFYSKPRY 192

Query: 248 KFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKMLRKSLQH 307
            F V R  F+P P V++A+V  +LK+    P     + FF +  +AF  +RKMLR SL+ 
Sbjct: 193 GFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKITRTAFEQRRKMLRASLKS 252

Query: 308 ISTALEIERALEDCSLPTTSRPEELSLNDFVRLHN 343
           +    +I  ALE       +RPE LSL DF++L++
Sbjct: 253 LFDPSKISNALEIIGQNPQARPEVLSLEDFIKLYH 276

[Close]

BLAST of Carg23882 vs. Swiss-Prot
Match: sp|Q9Z6K0|RSMA_CHLPN (Ribosomal RNA small subunit methyltransferase A OS=Chlamydia pneumoniae OX=83558 GN=rsmA PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-30
Identity = 88/276 (31.88%), Postives = 155/276 (56.16%), Query Frame = 0


Query: 66  RALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLIDLGAT 125
           R L+     P+KSL Q+++++ +I +++ A + V   D VLEIGPG G+LT  LI  GA 
Sbjct: 11  RFLSEIQNKPKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQ 70

Query: 126 VLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAKVV 185
           V+A+EKD   A  ++E       L +  E    C          K++          +VV
Sbjct: 71  VIAIEKDPMFAPSLEE-------LPIRLEIIDACKYPLDQLQEYKTL-------GKGRVV 130

Query: 186 SNIPFNISTDIIKQL-LPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVNFYSD 245
           +N+P++I+T ++ +L L   D +  V +++Q+E A R+V +  G  +   + +F+ F++D
Sbjct: 131 ANLPYHITTPLLTKLFLEAPDFWKTVTVMVQDEVARRIV-AQPGGRDYGSLTIFLQFFAD 190

Query: 246 PEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKMLRKS 305
             + FKV  + F+P+P V++AV+  K+K+     +   I  FF++  +AF  +RK+L  +
Sbjct: 191 IHYAFKVSASCFYPKPQVQSAVIHMKVKETLPL-SDEEIPVFFTLTRTAFQQRRKVLANT 250

Query: 306 LQHISTALEIERALEDCSLPTTSRPEELSLNDFVRL 341
           L+ +    ++E+AL++  L    RPE LSLND++ L
Sbjct: 251 LKGLYPKEQVEQALKELGLLLNVRPEVLSLNDYLAL 270

[Close]

BLAST of Carg23882 vs. Swiss-Prot
Match: sp|Q03T56|RSMA_LACBA (Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) OX=387344 GN=rsmA PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-29
Identity = 89/284 (31.34%), Postives = 147/284 (51.76%), Query Frame = 0


Query: 64  TLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLIDLG 123
           T   LN    + +KSLGQ+++ + +I   + AA +V + D V+EIGPG G+LT  +    
Sbjct: 14  TKAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGPGIGALTEQIAKRA 73

Query: 124 ATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAK 183
             V+A E D  +  ++DE       +K++NED  K ++ + ++   ++        +P K
Sbjct: 74  HKVVAFEIDENLLPVLDETLMDYKNVKIINEDILKANLPAVVADEFEA-------DRPLK 133

Query: 184 VVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVNFYS 243
           +V+N+P+ I+T I+  +L     F  +V+++Q E A RLV +  GT     ++V + + +
Sbjct: 134 LVANLPYYITTPILMGVLQSTVRFEAIVVMMQAEVAERLV-AEPGTKAYGSLSVIMQYRA 193

Query: 244 DPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKMLRK 303
             E  F VPRT F PQPNV++A++    ++A         K+ FS V   F  +RK L  
Sbjct: 194 HVEIAFNVPRTAFIPQPNVDSAIIRLTPREALPVNPYED-KALFSFVKGCFAHRRKSLWN 253

Query: 304 SLQHI-----STALEIERALEDCSLPTTSRPEELSLNDFVRLHN 343
           +LQ I          IE  L    +    RPE L+L +F+ L N
Sbjct: 254 NLQGIFGKQPEVRERIETVLNQTGISRQLRPERLTLLNFIELTN 288

[Close]

BLAST of Carg23882 vs. Swiss-Prot
Match: sp|Q2RME8|RSMA_MOOTA (Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=rsmA PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-29
Identity = 86/278 (30.94%), Postives = 150/278 (53.96%), Query Frame = 0


Query: 64  TLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLIDLG 123
           TL  +  KG +PRKS GQ+++++++I  ++A AA V  GD V+EIGPG G+LT  L    
Sbjct: 10  TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69

Query: 124 ATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAK 183
             V+A+E D  + A ++E  AG + ++++  D  K      ++ +L +    + +    K
Sbjct: 70  GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGT---GEGRLPTYK 129

Query: 184 VVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVNFYS 243
           VV+N+P+ I+T I+  LL      +E+VL++Q E   R++ +  G  +   ++V V +Y+
Sbjct: 130 VVANLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRML-ARPGGKDYGALSVVVQYYT 189

Query: 244 DPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKMLRK 303
           +P    KVPRT F+P+P V++ V+    +       V     FF +V +AFN +RK +  
Sbjct: 190 EPAVVLKVPRTVFYPRPEVDSLVLKLTCR-TRPVVQVEDEDFFFRVVRAAFNQRRKTILN 249

Query: 304 SLQHIS-TALEIERALEDCSLPTTSRPEELSLNDFVRL 341
           +L  +     +I  AL    +    R E L + +F  +
Sbjct: 250 ALGSLGFEKSKIMEALAGAGIDPRRRGETLGMEEFASI 282

[Close]

BLAST of Carg23882 vs. TrEMBL
Match: tr|A0A0A0L7J6|A0A0A0L7J6_CUCSA (rRNA adenine N(6)-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G124770 PE=3 SV=1)

HSP 1 Score: 560.5 bits (1443), Expect = 2.7e-156
Identity = 297/346 (85.84%), Postives = 318/346 (91.91%), Query Frame = 0


Query: 1   MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD 60
           MAA PLPNPFLPP SPT S QSP F FP +T  VG+R ATPFV+CS+A+VR G  VNPDD
Sbjct: 1   MAASPLPNPFLPPFSPTSSTQSPNFYFPPSTSVVGSRWATPFVSCSAASVRVGEGVNPDD 60

Query: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120
           YHST+RALNSKGR+PRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLT+VLI
Sbjct: 61  YHSTIRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNVLI 120

Query: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180
           + GATVLAVEKDSYMA LVDERFA TNRLKVLNEDF KC+VSSHM SLLKSIELS+++SQ
Sbjct: 121 NSGATVLAVEKDSYMAGLVDERFANTNRLKVLNEDFVKCNVSSHMMSLLKSIELSEARSQ 180

Query: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240
           PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEE ALRLV++S  TSE RPINVFVN
Sbjct: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRTSEYRPINVFVN 240

Query: 241 FYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300
           FYSDPE KFKVPRTNFFPQPNV+AAVVSFKLK+AADYPAVSS KSFFSMVNSAFNGKRKM
Sbjct: 241 FYSDPELKFKVPRTNFFPQPNVDAAVVSFKLKRAADYPAVSSTKSFFSMVNSAFNGKRKM 300

Query: 301 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVK 347
           LRKSLQHI T+LEIE+ALED SL  TSRPEELSL+DFV+LHNLIVK
Sbjct: 301 LRKSLQHICTSLEIEKALEDSSLLPTSRPEELSLDDFVKLHNLIVK 346

[Close]

BLAST of Carg23882 vs. TrEMBL
Match: tr|A0A1S3AW66|A0A1S3AW66_CUCME (rRNA adenine N(6)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103483311 PE=3 SV=1)

HSP 1 Score: 557.4 bits (1435), Expect = 2.3e-155
Identity = 298/347 (85.88%), Postives = 314/347 (90.49%), Query Frame = 0


Query: 1   MAAPPLPNPFLPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDD 60
           MAAPPLPNPFLPP S T   QSP   FPA+T   G+R A PFV+CS+ATVR G  VNPDD
Sbjct: 1   MAAPPLPNPFLPPFSFTSYRQSPNLYFPASTAIAGSRWAIPFVSCSAATVRVGEGVNPDD 60

Query: 61  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 120
           YHSTLRALNSKGR+PRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLT+VLI
Sbjct: 61  YHSTLRALNSKGRVPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTNVLI 120

Query: 121 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 180
           + GATVLAVEKDSYMAALVDERFA TNRLKVLNEDF KCHVSSHM S LKSIELS+++SQ
Sbjct: 121 NSGATVLAVEKDSYMAALVDERFANTNRLKVLNEDFVKCHVSSHMMSFLKSIELSEARSQ 180

Query: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 240
           PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEE ALRLV++S   SE RPINVFVN
Sbjct: 181 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEEAALRLVETSLRRSEYRPINVFVN 240

Query: 241 FYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 300
           FYSDPE KFKVPRTNFFPQPNV+AAVVSFKLKQAAD PAVSS KSFFSMVNSAFNGKRKM
Sbjct: 241 FYSDPELKFKVPRTNFFPQPNVDAAVVSFKLKQAADCPAVSSTKSFFSMVNSAFNGKRKM 300

Query: 301 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ 348
           LRKSLQHI T+ EIE+ALED SLP TSRPEELSL+DFVRLHNLIVKQ
Sbjct: 301 LRKSLQHICTSSEIEKALEDSSLPPTSRPEELSLDDFVRLHNLIVKQ 347

[Close]

BLAST of Carg23882 vs. TrEMBL
Match: tr|A0A2P6SGH8|A0A2P6SGH8_ROSCH (rRNA adenine N(6)-methyltransferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0352201 PE=3 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.3e-126
Identity = 252/344 (73.26%), Postives = 279/344 (81.10%), Query Frame = 0


Query: 11  LPPISPTFSPQSP----KFCFPATTPTVGARRATP--FVACSSATVRNGG-RVNPDDYHS 70
           LPPIS   SPQ+P    +   PA   T GAR++TP    AC+  T + GG R NPDDYH+
Sbjct: 14  LPPIS---SPQNPRPTLRPSLPAHNSTPGARKSTPTYITACAKTTRKTGGRRKNPDDYHA 73

Query: 71  TLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLIDLG 130
           TL ALNSKGR PRKSLGQHYML+S IN+QL AAA V EGDVVLEIGPGTGSLT+VLI+ G
Sbjct: 74  TLTALNSKGRFPRKSLGQHYMLDSEINDQLVAAAEVGEGDVVLEIGPGTGSLTNVLINAG 133

Query: 131 ATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAK 190
           ATVLA+EKD YMA LV ERF  T +LKVL EDF KCH+ SHMSSLL SIE S + S+ AK
Sbjct: 134 ATVLAIEKDPYMATLVSERFGQTGQLKVLQEDFVKCHIHSHMSSLLGSIESSGASSRHAK 193

Query: 191 VVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVNFYS 250
           VV+NIPFNISTD++KQLLPMGDIFSEVVLLLQEETA RLV+S   TSE RPINVFVNFYS
Sbjct: 194 VVANIPFNISTDVVKQLLPMGDIFSEVVLLLQEETAFRLVESYLRTSEYRPINVFVNFYS 253

Query: 251 DPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKMLRK 310
           DPEFKFKVPRTNFFPQPNV+AAVV F+LKQ   YP VSS KSFFSMVNSAFNGKRKMLRK
Sbjct: 254 DPEFKFKVPRTNFFPQPNVDAAVVKFRLKQPTQYPPVSSTKSFFSMVNSAFNGKRKMLRK 313

Query: 311 SLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVKQ 348
           SLQHI T  EIE ALE+   P TSRPEEL+ +DFV+LHNLIVK+
Sbjct: 314 SLQHICTPSEIESALENVGRPATSRPEELTTDDFVKLHNLIVKE 354

[Close]

BLAST of Carg23882 vs. TrEMBL
Match: tr|A0A1Q3DHT9|A0A1Q3DHT9_CEPFO (rRNA adenine N(6)-methyltransferase OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_35386 PE=3 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 9.8e-122
Identity = 239/346 (69.08%), Postives = 283/346 (81.79%), Query Frame = 0


Query: 6   LPNPFLPPIS----PTFSPQSPKFCFPATTPTVG-ARRATPFVACSSATVRNGGRVNPDD 65
           + +P LPPIS    PT     PK   PA   +   A R  P  +C++ T     R NPDD
Sbjct: 1   MSSPNLPPISLYSTPTIIRPKPKPSLPARNSSSSCAPRQRPQTSCTATT----NRRNPDD 60

Query: 66  YHSTLRALNSKGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLI 125
           YH+TL+ALNSK R P+KSLGQHYMLNS+INE+LA AAN++EGDVVLEIGPGTGSLT+VLI
Sbjct: 61  YHTTLKALNSKNRFPKKSLGQHYMLNSAINEELATAANIEEGDVVLEIGPGTGSLTNVLI 120

Query: 126 DLGATVLAVEKDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQ 185
           + GA V+A+EKD YMAALV ERFA TN+LKVL EDF KCH+ SHM SLL+S+ LS++ ++
Sbjct: 121 NAGAIVIAIEKDPYMAALVKERFASTNQLKVLQEDFVKCHIRSHMYSLLESMCLSEANTR 180

Query: 186 PAKVVSNIPFNISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVN 245
            AKVV+NIPFNISTD++KQLLPMGDIFSEVVLLLQ+ETALRLV++   T E RPINVFV+
Sbjct: 181 YAKVVANIPFNISTDVVKQLLPMGDIFSEVVLLLQDETALRLVEAPLRTPEYRPINVFVS 240

Query: 246 FYSDPEFKFKVPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKM 305
           FYSDPE+K KVPR+NFFPQPNV+AAVV+FKLKQAA YP VSS ++FFSMVNSAFNGKRKM
Sbjct: 241 FYSDPEYKLKVPRSNFFPQPNVDAAVVTFKLKQAAHYPPVSSTQAFFSMVNSAFNGKRKM 300

Query: 306 LRKSLQHISTALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVK 347
           LR+SLQHI T LEIE+AL +  LP TSRP EL+LNDFV+LHNLI+K
Sbjct: 301 LRRSLQHICTPLEIEKALGNVGLPATSRPGELTLNDFVKLHNLIMK 342

[Close]

BLAST of Carg23882 vs. TrEMBL
Match: tr|A0A067K8U9|A0A067K8U9_JATCU (rRNA adenine N(6)-methyltransferase OS=Jatropha curcas OX=180498 GN=JCGZ_14466 PE=3 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 8.3e-121
Identity = 234/336 (69.64%), Postives = 273/336 (81.25%), Query Frame = 0


Query: 11  LPPISPTFSPQSPKFCFPATTPTVGARRATPFVACSSATVRNGGRVNPDDYHSTLRALNS 70
           L PI P+         FPA    V  +     V C       G + +PDDYHSTL+ALNS
Sbjct: 11  LMPIPPSKPRTRGAPSFPAHNNAVRLQTRKLTVTC-------GTKRSPDDYHSTLKALNS 70

Query: 71  KGRMPRKSLGQHYMLNSSINEQLAAAANVKEGDVVLEIGPGTGSLTSVLIDLGATVLAVE 130
           +GR PRK+LGQHYMLN+ +NEQL  AANV++GDVVLEIGPGTGSLT+VL+D GAT+LA+E
Sbjct: 71  RGRRPRKTLGQHYMLNTQVNEQLVGAANVEDGDVVLEIGPGTGSLTNVLLDAGATILAIE 130

Query: 131 KDSYMAALVDERFAGTNRLKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAKVVSNIPF 190
           KD +MAALV ERFA T RL+VL EDF KCH+ SHM SLL+S+   + + + AKVV+NIPF
Sbjct: 131 KDPHMAALVTERFAHTQRLRVLQEDFVKCHIRSHMLSLLESLSTLNPEPRYAKVVANIPF 190

Query: 191 NISTDIIKQLLPMGDIFSEVVLLLQEETALRLVDSSSGTSEKRPINVFVNFYSDPEFKFK 250
           NISTD++KQLLPMGDIFSEVVLLLQEETALRLV+SS   SE RPIN+FVNFYSDPE+KFK
Sbjct: 191 NISTDVVKQLLPMGDIFSEVVLLLQEETALRLVESSLRKSEYRPINIFVNFYSDPEYKFK 250

Query: 251 VPRTNFFPQPNVEAAVVSFKLKQAADYPAVSSIKSFFSMVNSAFNGKRKMLRKSLQHIST 310
           VPR+NFFPQPNV+AAVV+FKLKQA DYPAV S KSFFSMVNSAFNGKRKMLR+SLQHI T
Sbjct: 251 VPRSNFFPQPNVDAAVVAFKLKQATDYPAVPSTKSFFSMVNSAFNGKRKMLRRSLQHICT 310

Query: 311 ALEIERALEDCSLPTTSRPEELSLNDFVRLHNLIVK 347
           +LEIE ALE+  LP TSRPEEL+L+DFV+LHNLIV+
Sbjct: 311 SLEIEEALENVGLPATSRPEELTLDDFVKLHNLIVR 339

The following BLAST results are available for this feature:

BLAST of Carg23882 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942262.1	5.9e-187	99.71	ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita moschata...	[more]
XP_023538971.1	1.3e-181	97.41	ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita pepo sub...	[more]
XP_022974171.1	4.8e-181	97.12	ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita maxima]	[more]
XP_022147255.1	5.6e-161	87.03	ribosomal RNA small subunit methyltransferase, chloroplastic isoform X1 [Momordi...	[more]
XP_004133887.1	4.1e-156	85.84	PREDICTED: probable dimethyladenosine transferase [Cucumis sativus] >KGN56557.1 ...	[more]

BLAST of Carg23882 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G01860.1	3.0e-116	67.95	Ribosomal RNA adenine dimethylase family protein	[more]
AT2G47420.1	8.9e-20	30.74	Ribosomal RNA adenine dimethylase family protein	[more]
AT5G66360.2	1.2e-19	28.10	Ribosomal RNA adenine dimethylase family protein	[more]

BLAST of Carg23882 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65090\|DIM1C_ARATH	5.4e-115	67.95	Ribosomal RNA small subunit methyltransferase, chloroplastic OS=Arabidopsis thal...	[more]
sp\|Q6ME80\|RSMA_PARUW	1.3e-39	34.55	Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (s...	[more]
sp\|Q9Z6K0\|RSMA_CHLPN	1.8e-30	31.88	Ribosomal RNA small subunit methyltransferase A OS=Chlamydia pneumoniae OX=83558...	[more]
sp\|Q03T56\|RSMA_LACBA	1.2e-29	31.34	Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus brevis (strain ...	[more]
sp\|Q2RME8\|RSMA_MOOTA	2.0e-29	30.94	Ribosomal RNA small subunit methyltransferase A OS=Moorella thermoacetica (strai...	[more]

BLAST of Carg23882 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7J6\|A0A0A0L7J6_CUCSA	2.7e-156	85.84	rRNA adenine N(6)-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_3G124770 P...	[more]
tr\|A0A1S3AW66\|A0A1S3AW66_CUCME	2.3e-155	85.88	rRNA adenine N(6)-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103483311 PE=3...	[more]
tr\|A0A2P6SGH8\|A0A2P6SGH8_ROSCH	1.3e-126	73.26	rRNA adenine N(6)-methyltransferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g...	[more]
tr\|A0A1Q3DHT9\|A0A1Q3DHT9_CEPFO	9.8e-122	69.08	rRNA adenine N(6)-methyltransferase OS=Cephalotus follicularis OX=3775 GN=CFOL_v...	[more]
tr\|A0A067K8U9\|A0A067K8U9_JATCU	8.3e-121	69.64	rRNA adenine N(6)-methyltransferase OS=Jatropha curcas OX=180498 GN=JCGZ_14466 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing
GO:0000154	rRNA modification

Vocabulary: **Molecular Function**
Term	Definition
GO:0008649	rRNA methyltransferase activity
GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR029063	SAM-dependent_MTases
IPR020596	rRNA_Ade_Mease_Trfase_CS
IPR023165	rRNA_Ade_diMease-like
IPR011530	rRNA_adenine_dimethylase
IPR001737	KsgA/Erm
IPR020598	rRNA_Ade_methylase_Trfase_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000154	rRNA modification
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity
molecular_function	GO:0008649	rRNA methyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23882-RA	Carg23882-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020598	Ribosomal RNA adenine methylase transferase, N-terminal	SMART	SM00650	rADcneu6	coord: 89..273 e-value: 7.8E-58 score: 208.1
IPR001737	Ribosomal RNA adenine methyltransferase KsgA/Erm	PFAM	PF00398	RrnaAD	coord: 76..343 e-value: 9.0E-48 score: 162.5
IPR001737	Ribosomal RNA adenine methyltransferase KsgA/Erm	PANTHER	PTHR11727	DIMETHYLADENOSINE TRANSFERASE	coord: 32..346
IPR001737	Ribosomal RNA adenine methyltransferase KsgA/Erm	PROSITE	PS51689	SAM_RNA_A_N6_MT	coord: 75..347 score: 61.5
None	No IPR available	GENE3D	G3DSA:3.40.50.150		coord: 67..274 e-value: 5.3E-58 score: 197.7
None	No IPR available	PANTHER	PTHR11727:SF11	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE, CHLOROPLASTIC	coord: 32..346
None	No IPR available	CDD	cd02440	AdoMet_MTases	coord: 105..201 e-value: 0.00302059 score: 34.7131
IPR011530	Ribosomal RNA adenine dimethylase	TIGRFAM	TIGR00755	TIGR00755	coord: 75..343 e-value: 4.8E-59 score: 197.7
IPR023165	rRNA adenine dimethylase-like	GENE3D	G3DSA:1.10.8.100		coord: 278..344 e-value: 1.2E-15 score: 59.1
IPR020596	Ribosomal RNA adenine methylase transferase, conserved site	PROSITE	PS01131	RRNA_A_DIMETH	coord: 105..132
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 72..346

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23882	Cla021271	Watermelon (97103) v1	carwmB0483
Carg23882	Csa3G124770	Cucumber (Chinese Long) v2	carcuB0518
Carg23882	MELO3C006150	Melon (DHL92) v3.5.1	carmeB0494
Carg23882	ClCG05G001900	Watermelon (Charleston Gray)	carwcgB0472
Carg23882	CSPI03G09180	Wild cucumber (PI 183967)	carcpiB0525
Carg23882	Cucsa.258010	Cucumber (Gy14) v1	carcgyB0559
Carg23882	CmaCh06G011100	Cucurbita maxima (Rimu)	carcmaB0679
Carg23882	CmoCh06G011380	Cucurbita moschata (Rifu)	carcmoB0661
Carg23882	Lsi05G020010	Bottle gourd (USVL1VR-Ls)	carlsiB442
Carg23882	Cp4.1LG08g01780	Cucurbita pepo (Zucchini)	carcpeB0687
Carg23882	CsGy3G009260	Cucumber (Gy14) v2	carcgybB0495
Carg23882	MELO3C006150.2	Melon (DHL92) v3.6.1	carmedB0500
Carg23882	CsaV3_3G009300	Cucumber (Chinese Long) v3	carcucB0524
Carg23882	Cla97C05G082340	Watermelon (97103) v2	carwmbB0511
Carg23882	Bhi01G000227	Wax gourd	carwgoB0591

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23882	Silver-seed gourd	carcarB474
Carg23882	Cucurbita maxima (Rimu)	carcmaB0678
Carg23882	Cucurbita moschata (Rifu)	carcmoB0659
Carg23882	Cucurbita pepo (Zucchini)	carcpeB0685