Carg23873 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23873
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LOB domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_345 : 212931 .. 213410 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTACTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCAACGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCAGTGAACAGTATGGTATATGAAGCAAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCGGCGGCGCAGGCTGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA

mRNA sequence

ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTACTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCAACGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCAGTGAACAGTATGGTATATGAAGCAAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCGGCGGCGCAGGCTGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA

Coding sequence (CDS)

ATGGGAGCTGGTTCATCGCCATGCGCCTCCTGCAAATTACTACGGCGGCGGTGCGCCAAGGACTGCATTTTCGCCCCTTATTTCCCTCCCAACGACCCTTACAAGTTCGCCATTGTTCATAAGATCTTCGGCGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTGCCGCTGGATCAAAGACCCGATGCAGTGAACAGTATGGTATATGAAGCAAGTGCTAGAATGCGAGACCCGGTTTACGGATGTGTAGGAGCCATCACATTCCTCCAAAACCAGGTGTCCCGATTGGAAATGCAACTGGCGGCGGCGCAGGCTGAGATTTTGAGCTTTCAGATGCAACAACAGGCGGCTCCGGCGAGTTTTCCGATGACCCAGATGAACCAATATGATCAAAATCTTGTTTTTCTATCAAATGCTGATTCTTTTAATTCCGTTGATGGTTCGCCGGAAGTTGAAGATTATTGCTCTCTGTGGAGTTGA

Protein sequence

MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS

Homology

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BLAST of Carg23873 vs. NCBI nr
Match: XP_023533075.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.9 bits (821), Expect = 2.5e-84
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPP+DPYKFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of Carg23873 vs. NCBI nr
Match: XP_022947802.1 (LOB domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 318.9 bits (816), Expect = 9.6e-84
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPP+DP+KFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of Carg23873 vs. NCBI nr
Match: XP_023006803.1 (LOB domain-containing protein 12-like [Cucurbita maxima])

HSP 1 Score: 298.5 bits (763), Expect = 1.3e-77
Identity = 148/159 (93.08%), Postives = 149/159 (93.71%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MGAGSSPCASCKLLRRRCAKDCIFAPYFPP+DPYKFAIVHKIFGASNVSKMLQELPLDQR
Sbjct: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPDDPYKFAIVHKIFGASNVSKMLQELPLDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
           PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSF          
Sbjct: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFXXXXXXXXXX 120

Query: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS
Sbjct: 121 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 159

[Close]

BLAST of Carg23873 vs. NCBI nr
Match: XP_008463841.1 (PREDICTED: LOB domain-containing protein 12-like [Cucumis melo])

HSP 1 Score: 233.8 bits (595), Expect = 4.0e-58
Identity = 117/161 (72.67%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VSRLE+QL AAQAEIL+ QM+QQ    +
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120

Query: 121 FP--MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FP    QM+Q +QNL+  SN DS NS+      EDY  +W+
Sbjct: 121 FPXXXXQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of Carg23873 vs. NCBI nr
Match: XP_004143222.1 (PREDICTED: LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypothetical protein Csa_6G181550 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 1.2e-57
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQM-QQQAAPA 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VS+LE+QL AA+AEIL  QM QQQ A  
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 SFPM--TQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           +FPM  TQM+Q +QNL+ LSNADS NS       +D+  LW+
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of Carg23873 vs. TAIR10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 198.4 bits (503), Expect = 3.4e-51
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRP 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPP+DP+KFAIVHK+FGASNVSKMLQELP+ QR 
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQ 116
           DAVNS+V+EA+AR+RDPVYGCVGAI++LQNQVS+L+MQLA AQAEIL  QMQ +
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE 116

[Close]

BLAST of Carg23873 vs. TAIR10
Match: AT1G31320.1 (LOB domain-containing protein 4)

HSP 1 Score: 163.7 bits (413), Expect = 9.3e-41
Identity = 75/110 (68.18%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP ++P KFA VH++FGASNV+KMLQELP+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQ 115
           +SMVYEA+AR+RDPVYGCVGAI+ LQ Q+  L+ QLA AQAE++  +++Q
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

[Close]

BLAST of Carg23873 vs. TAIR10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-38
Identity = 85/161 (52.80%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKD-CIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 61
           G   SPCA CKLLRR+C KD C+FAPYFP  +PYKFAIVHKIFGASNV+KMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 62  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 121
            DAV+SMVYEA+AR++DPVYGCVG I+ L  Q+  L+ QLA AQAE++  +   +     
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 122 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCS--LWS 160
            P T        + F SN D ++ +D +    D     LWS
Sbjct: 129 PPYTA-----STVTFPSNKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of Carg23873 vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CK LRR+C   CIFAPYFPP +P+KFA VHKIFGASNV+K+L EL   QR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPA 120
           NS+ YEA AR+RDPVYGCVGAI++LQ QV RL+ +L AA A++  + +   AA A
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGA 123

[Close]

BLAST of Carg23873 vs. TAIR10
Match: AT2G40470.1 (LOB domain-containing protein 15)

HSP 1 Score: 151.0 bits (380), Expect = 6.3e-37
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           +PCA+CKLLRRRCA++C F+PYF P++P+KFA VHK+FGASNVSKML E+P  QR DA N
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFP 123
           S+VYEA+ R+RDPVYGC+GAI+ LQ QV     +L A ++EIL ++ ++  A    P
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQAXXXELTAVRSEILKYKQREAVATLIVP 160

[Close]

BLAST of Carg23873 vs. Swiss-Prot
Match: sp|Q8LBW3|LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 198.4 bits (503), Expect = 6.2e-50
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRP 61
           G GSSPCASCKLLRRRCAKDCIFAPYFPP+DP+KFAIVHK+FGASNVSKMLQELP+ QR 
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 62  DAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQ 116
           DAVNS+V+EA+AR+RDPVYGCVGAI++LQNQVS+L+MQLA AQAEIL  QMQ +
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE 116

[Close]

BLAST of Carg23873 vs. Swiss-Prot
Match: sp|Q9SHE9|LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-39
Identity = 75/110 (68.18%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CKLLRRRCA+DC+F+PYFP ++P KFA VH++FGASNV+KMLQELP+ QR DAV
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQ 115
           +SMVYEA+AR+RDPVYGCVGAI+ LQ Q+  L+ QLA AQAE++  +++Q
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

[Close]

BLAST of Carg23873 vs. Swiss-Prot
Match: sp|Q9SA51|LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-37
Identity = 85/161 (52.80%), Postives = 106/161 (65.84%), Query Frame = 0


Query: 2   GAGSSPCASCKLLRRRCAKD-CIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 61
           G   SPCA CKLLRR+C KD C+FAPYFP  +PYKFAIVHKIFGASNV+KMLQEL  + R
Sbjct: 9   GRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHR 68

Query: 62  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 121
            DAV+SMVYEA+AR++DPVYGCVG I+ L  Q+  L+ QLA AQAE++  +   +     
Sbjct: 69  SDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKP 128

Query: 122 FPMTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCS--LWS 160
            P T        + F SN D ++ +D +    D     LWS
Sbjct: 129 PPYTA-----STVTFPSNKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of Carg23873 vs. Swiss-Prot
Match: sp|Q9FML4|LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-36
Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 5   SSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAV 64
           +SPCA+CK LRR+C   CIFAPYFPP +P+KFA VHKIFGASNV+K+L EL   QR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 65  NSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPA 120
           NS+ YEA AR+RDPVYGCVGAI++LQ QV RL+ +L AA A++  + +   AA A
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGA 123

[Close]

BLAST of Carg23873 vs. Swiss-Prot
Match: sp|Q8L5T5|LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 69/117 (58.97%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 6   SPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQRPDAVN 65
           +PCA+CKLLRRRCA++C F+PYF P++P+KFA VHK+FGASNVSKML E+P  QR DA N
Sbjct: 44  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query: 66  SMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPASFP 123
           S+VYEA+ R+RDPVYGC+GAI+ LQ QV     +L A ++EIL ++ ++  A    P
Sbjct: 104 SLVYEANVRLRDPVYGCMGAISALQQQVQAXXXELTAVRSEILKYKQREAVATLIVP 160

[Close]

BLAST of Carg23873 vs. TrEMBL
Match: tr|A0A1S3CKM4|A0A1S3CKM4_CUCME (LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.7e-58
Identity = 117/161 (72.67%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VSRLE+QL AAQAEIL+ QM+QQ    +
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTT 120

Query: 121 FP--MTQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           FP    QM+Q +QNL+  SN DS NS+      EDY  +W+
Sbjct: 121 FPXXXXQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 161

[Close]

BLAST of Carg23873 vs. TrEMBL
Match: tr|A0A0A0KBK5|A0A0A0KBK5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 7.8e-58
Identity = 120/162 (74.07%), Postives = 136/162 (83.95%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG GSSPCASCKLLRRRCAKDCIFAPYFPP+DP KFAIVHKIFGASNVSKMLQE+P+DQR
Sbjct: 1   MGVGSSPCASCKLLRRRCAKDCIFAPYFPPHDPLKFAIVHKIFGASNVSKMLQEVPVDQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQM-QQQAAPA 120
            DAV+SMVYEASARM+DPVYGCVG I FLQN+VS+LE+QL AA+AEIL  QM QQQ A  
Sbjct: 61  ADAVSSMVYEASARMQDPVYGCVGKILFLQNEVSQLEIQLGAARAEILMLQMRQQQEASI 120

Query: 121 SFPM--TQMNQYDQNLVFLSNADSFNSVDGSPEVEDYCSLWS 160
           +FPM  TQM+Q +QNL+ LSNADS NS       +D+  LW+
Sbjct: 121 TFPMTTTQMDQDEQNLMILSNADSSNSFHVFQAADDHYPLWT 162

[Close]

BLAST of Carg23873 vs. TrEMBL
Match: tr|A0A1S4DQZ8|A0A1S4DQZ8_TOBAC (LOB domain-containing protein 12-like OS=Nicotiana tabacum OX=4097 GN=LOC107832246 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.5e-53
Identity = 103/130 (79.23%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG G+SPCASCKLLRRRCAKDCIFAPYFPP+DP+KFAIVHK+FGASN+SKM+QELP+ QR
Sbjct: 1   MGGGTSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMIQELPIQQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
            DAVNS+VYEA+ARMRDPVYGCVGAI++LQNQVS+LEMQLA AQ EIL  QMQQ++AP +
Sbjct: 61  ADAVNSLVYEANARMRDPVYGCVGAISYLQNQVSQLEMQLAMAQTEILCIQMQQESAP-N 120

Query: 121 FPMTQMNQYD 131
            P  QM QYD
Sbjct: 121 LPAIQMEQYD 129

[Close]

BLAST of Carg23873 vs. TrEMBL
Match: tr|A0A1J6JRW5|A0A1J6JRW5_NICAT (Lob domain-containing protein 12 OS=Nicotiana attenuata OX=49451 GN=LBD12_0 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.5e-53
Identity = 103/130 (79.23%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG G+SPCASCKLLRRRCAKDCIFAPYFPP+DP+KFAIVHK+FGASN+SKM+QELP+ QR
Sbjct: 1   MGGGTSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMIQELPIQQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
            DAVNS+VYEA+ARMRDPVYGCVGAI++LQNQVS+LEMQLA AQ EIL  QMQQ++AP +
Sbjct: 61  ADAVNSLVYEANARMRDPVYGCVGAISYLQNQVSQLEMQLAMAQTEILCIQMQQESAP-N 120

Query: 121 FPMTQMNQYD 131
            P  QM QYD
Sbjct: 121 LPAIQMEQYD 129

[Close]

BLAST of Carg23873 vs. TrEMBL
Match: tr|A0A1S4BGH1|A0A1S4BGH1_TOBAC (LOB domain-containing protein 12-like OS=Nicotiana tabacum OX=4097 GN=LOC107807995 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 9.8e-53
Identity = 103/130 (79.23%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MGAGSSPCASCKLLRRRCAKDCIFAPYFPPNDPYKFAIVHKIFGASNVSKMLQELPLDQR 60
           MG G+SPCASCKLLRRRCAKDCIFAPYFPP+DP+KFAIVHK+FGASN+SKM+QELP+ QR
Sbjct: 1   MGGGTSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMIQELPVQQR 60

Query: 61  PDAVNSMVYEASARMRDPVYGCVGAITFLQNQVSRLEMQLAAAQAEILSFQMQQQAAPAS 120
            DAVNS+VYEA+ARMRDPVYGCVGAI++LQNQVS+LEMQLA AQ EIL  QMQQ++AP +
Sbjct: 61  ADAVNSLVYEANARMRDPVYGCVGAISYLQNQVSQLEMQLAMAQTEILCIQMQQESAP-N 120

Query: 121 FPMTQMNQYD 131
            P  QM QYD
Sbjct: 121 LPAIQMEQYD 129

The following BLAST results are available for this feature:

BLAST of Carg23873 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533075.1	2.5e-84	99.37	LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022947802.1	9.6e-84	98.74	LOB domain-containing protein 12-like [Cucurbita moschata]	[more]
XP_023006803.1	1.3e-77	93.08	LOB domain-containing protein 12-like [Cucurbita maxima]	[more]
XP_008463841.1	4.0e-58	72.67	PREDICTED: LOB domain-containing protein 12-like [Cucumis melo]	[more]
XP_004143222.1	1.2e-57	74.07	PREDICTED: LOB domain-containing protein 12 [Cucumis sativus] >KGN47050.1 hypoth...	[more]

BLAST of Carg23873 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30130.1	3.4e-51	82.46	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	9.3e-41	68.18	LOB domain-containing protein 4	[more]
AT1G16530.1	1.5e-38	52.80	ASYMMETRIC LEAVES 2-like 9	[more]
AT5G63090.2	1.3e-37	63.48	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	6.3e-37	58.97	LOB domain-containing protein 15	[more]

BLAST of Carg23873 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LBW3\|LBD12_ARATH	6.2e-50	82.46	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
sp\|Q9SHE9\|LBD4_ARATH	1.7e-39	68.18	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
sp\|Q9SA51\|LBD3_ARATH	2.7e-37	52.80	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
sp\|Q9FML4\|LOB_ARATH	2.3e-36	63.48	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
sp\|Q8L5T5\|LBD15_ARATH	1.1e-35	58.97	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of Carg23873 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKM4\|A0A1S3CKM4_CUCME	2.7e-58	72.67	LOB domain-containing protein 12-like OS=Cucumis melo OX=3656 GN=LOC103501884 PE...	[more]
tr\|A0A0A0KBK5\|A0A0A0KBK5_CUCSA	7.8e-58	74.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G181550 PE=4 SV=1	[more]
tr\|A0A1S4DQZ8\|A0A1S4DQZ8_TOBAC	7.5e-53	79.23	LOB domain-containing protein 12-like OS=Nicotiana tabacum OX=4097 GN=LOC1078322...	[more]
tr\|A0A1J6JRW5\|A0A1J6JRW5_NICAT	7.5e-53	79.23	Lob domain-containing protein 12 OS=Nicotiana attenuata OX=49451 GN=LBD12_0 PE=4...	[more]
tr\|A0A1S4BGH1\|A0A1S4BGH1_TOBAC	9.8e-53	79.23	LOB domain-containing protein 12-like OS=Nicotiana tabacum OX=4097 GN=LOC1078079...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23873-RA	Carg23873-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..113
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 2..117
None	No IPR available	PANTHER	PTHR31301:SF60	SUBFAMILY NOT NAMED	coord: 2..117
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 7..104 e-value: 1.1E-40 score: 138.0
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 6..107 score: 26.681

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23873	Cla013390	Watermelon (97103) v1	carwmB0512
Carg23873	Csa6G181550	Cucumber (Chinese Long) v2	carcuB0544
Carg23873	ClCG02G019310	Watermelon (Charleston Gray)	carwcgB0501
Carg23873	CSPI06G13500	Wild cucumber (PI 183967)	carcpiB0551
Carg23873	Cucsa.139480	Cucumber (Gy14) v1	carcgyB0591
Carg23873	CmaCh02G007250	Cucurbita maxima (Rimu)	carcmaB0724
Carg23873	CmaCh20G003290	Cucurbita maxima (Rimu)	carcmaB0723
Carg23873	CmoCh02G007260	Cucurbita moschata (Rifu)	carcmoB0701
Carg23873	CmoCh20G003540	Cucurbita moschata (Rifu)	carcmoB0700
Carg23873	Lsi10G014580	Bottle gourd (USVL1VR-Ls)	carlsiB469
Carg23873	Cp4.1LG05g09850	Cucurbita pepo (Zucchini)	carcpeB0728
Carg23873	CsGy6G013490	Cucumber (Gy14) v2	carcgybB0520
Carg23873	CsaV3_6G015930	Cucumber (Chinese Long) v3	carcucB0550
Carg23873	Cla97C02G045290	Watermelon (97103) v2	carwmbB0539
Carg23873	Cla97C07G133000	Watermelon (97103) v2	carwmbB0540
Carg23873	Bhi07G000470	Wax gourd	carwgoB0627

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23873	Carg03379	Silver-seed gourd	carcarB357

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23873	Wax gourd	carwgoB0626
Carg23873	Cucurbita pepo (Zucchini)	carcpeB0727