Carg23580 (gene) Silver-seed gourd

Overview
NameCarg23580
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSecretory carrier-associated membrane protein
LocationCucurbita_argyrosperma_scaffold_235 : 146573 .. 149884 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGCCACAATGATCCAAATCCGTTCGATGAAGGAGAGGTCAATCCATTCTCGGTAAGTTTCTCTTTCTTTCGTGGCTAAATCTCATTGTTTTTTTTTTTTTCGCATTTTCGTTTCTTGTTTCGGCGATTTTCATTCGGCGAGTGTCGCGATCGGGTTCTGTTCCTATTTTTGAGTCTCGAGGGGGCGAGAGTGAGGTTGTTGGATTGATCTGAATCTTAGGGAAATCTTGCTAAATTTGGTGGAATACGGTTAGTTTATGGCTGCTGAGAAATTTCGTGGGAGACTGAACAAGGGCGGTGTGGAACATTTGAAGTGTTGAAAATCATGGGCTCCCTAATGGTATGATATCAATGGAGATGCATTCCTTACTTATAAACTCAAGATCGACCCTCCCCATAATGGTATGATGTCAATGGAGATGCATTCCTTACTTATAAACTCAAGATCGACCCTCTCCATAATGGTATGATATCAATGGAGATGCATTCCTTACTTATAAACTCAAGATCGACCCTCTCCATAATGGTGACCATCTCCATAATGGTATGATATCAATGGAGATGCATTTCTTACTTATAAACTCAAGATCGACCATCTCCATAATGGTATGGTGTCAATGGAGATGCATTTCTTACTTATAAACTCAAGATCGACCCTCCCCATAATGGTGTGATGTCAATGGAGATGCATTCCTTACTTATAAACTCAAGATCGACCCTCTCCATAATGGTATGATGTCAATGGAGATGCATTCCTTAATAATAAACTCAAGATTGACCCTCTCCATAATGGTATGATATCAATGGAGATGCATTCCTTACTTATAAACTCAAGATCGACCATCTCCATAATGGTGTGAGTTCAATGGAGATGCATTCCTTACTTATAAACTCAAGATTGACCATCTCCATAATGGTATGATGTCAATGGAGATGCTTTCCTTACTTATAAACTCAAGATCGACCCTCTCCATAATGGTATGATGTCAATGGAGATGCATTCCTTACTTATAAACTCAGGATCGACCCTCTCCATAATGGTATGATATCAATGGAAATGGAGATGTATTCCTTACTTATAAACCCAGGATCAACCTCTTAATTAGCCGATGTGGGACTCCTCTTCCAACAATCCTCCCCTTGAACTCGAACAAAGTACACCATAGAGCCTCCCTTGAGGTCTATGGAGCCCTCGAACAACCTCCCCTTAATCGAGGCTTGACTCCTTCTCTGGAGCTCTTGAACAAAGTACACCTTCTGTTCGACACTTGAGTCACTTTTGACTACACTTTTGAGGGTCTCAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGGCTAAGTTAAGGGCATGACTCTGATACCATGTTAGAAGTTGGTAAAATCACAACTCTTCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGTTTTTAACTTCCCCAAAAGGCCTCGTACCAATGGAGATGTATTTCTTACTTATAAACCCACTATCAACCCCTTAATTAGCTGCCGACGTGGACTCCTCTTCCAACCATCCTCAACAGTTTGTTTAAGGATGGAGTAGAAATTAATGTTTAAAGGTTGAACGGCACTAAAAGTAGACTTACGTTTTGGAGTCCTAAGGAAGATGATTTCACCATTTCGGATTGAGAATGAGTGTCATTACAATTCTGTGTGGAATTGTTATTTGAATATGCATAAATGAAATCAACCGTTTGTTGATTATTGACAATTTCACAGGCGTTCTTTGATATCTGAAACTAAAAACAAGCAAAATCAAGCTTGTTCTATGGAGGATTGGAATGGTAATAACATCACTTGTTGCTAATTTTGACATTTGCAGAAAGACAATGCTGCTCCTGGATCTAAGTTTCGGATCCCACAAATGATATCGGACACTCTGGGATTTGGGCAGAAGCAGGATGCTACAGTGGATATACCACTGGATACGATGAATGTAACGAATATCATGTCCTGTCTTTTCTTGCTTACATTTTCTTTACCTAGAAGAATCAAGTAACGCTTCATTTGGTTCGTGTAGAATCTGAGGAAGAATGAGAGAGACATTGCCGCTTGGGAAGCAGAACTTAATAGGAAAGAAAAGGTATTCTTCGATATCCATGATTTTGAACTTGACAATATATGAATATATCTGTAGAGGTTACCTAACTGTTCTTATGCCTCATTTTTACCAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAAAGGTGGTTGACATCAAATGTTGTTTGATTTTGTTTTTATGAAGCTATCGACAATCTATAACTTTTTCAATGTTGCACAGCTGGTGTCCCCACTGATGATAGAAACTGGCCTCCATTTTTCCCCATTATTCATCATGATATAGCTAATGAAATTCCAGTACATGCTCAGAAGTTGCAGTACTTGGCTTTCGCTAGCTGGCTAGGTATGCAAAGTTAATTGTCTCAATTCTTTTTTGTATAAACTTTATATCCAAATATTCGAGTATAAATTGTGAGATCCTACATCGGTTGGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGACAACCTCTCTCTAGTAGACACGTTTTAAAAACCTTGAGGGGAAGCCCAAAGAGGACAATATCTGTTAGCGGTAGGCTTGAGCGGTTACAAACACATCGATTGGAGAGGGGAACGAGTGCCAGCAAGGACATTGGACTTGGGGGGGGGGGGGGGGAATTGTGAGATCCCACGTCGGTTGGAGAGGGGCATGAAGCATTCTTTACAAGAGTATGAAAACCTCTCCTTAGTAGACGCGTTTTAAAACTTTGAGGGGAAGCCCGGAAGGGAAAGTCCAAAGAAGACAATATCTACTGGCGGTGGGCTTGAGCTGTTACACAAACATTCTTGAAAGTGTTGCTTTTCTATGTGTATATGATGTTCTTCACCTCACTTAAGTTCTTCTTGCCTCACTTAGCGTCTCGTCCCCGACATTATCTTTTCAAACCATATGAACGTAGTTATTTTTAACTCTACATTTTATCCCTTGCTGTTTTTGCAGGCATAGGGTTGTGCTTGGTCTTCAATGTTATTGCTATAACTGTCTGCTGGATAAGAGGCGGGGGTAATTACTTCACTATCAGTTTTCTATTTTTTGTGCAATGGGTCACTTTAAGCTGCAACAAATGGATTTTTTTTTTACTGTTGTCACAACTTGCAGGAGTCACAATCTTTTTACTTGCTGTAATATATGCCATACTTGGAATTCCTCTTTCATATGTGCTATGGTATAGGCCTCTATACCGTGCTATGAGGTGA

mRNA sequence

ATGAATCGCCACAATGATCCAAATCCGTTCGATGAAGGAGAGGTCAATCCATTCTCGAAAGACAATGCTGCTCCTGGATCTAAGTTTCGGATCCCACAAATGATATCGGACACTCTGGGATTTGGGCAGAAGCAGGATGCTACAGTGGATATACCACTGGATACGATGAATAATCTGAGGAAGAATGAGAGAGACATTGCCGCTTGGGAAGCAGAACTTAATAGGAAAGAAAAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAAAGGCATAGGGTTGTGCTTGGTCTTCAATGTTATTGCTATAACTGTCTGCTGGATAAGAGGCGGGGGAGTCACAATCTTTTTACTTGCTGTAATATATGCCATACTTGGAATTCCTCTTTCATATGTGCTATGGTATAGGCCTCTATACCGTGCTATGAGGTGA

Coding sequence (CDS)

ATGAATCGCCACAATGATCCAAATCCGTTCGATGAAGGAGAGGTCAATCCATTCTCGAAAGACAATGCTGCTCCTGGATCTAAGTTTCGGATCCCACAAATGATATCGGACACTCTGGGATTTGGGCAGAAGCAGGATGCTACAGTGGATATACCACTGGATACGATGAATAATCTGAGGAAGAATGAGAGAGACATTGCCGCTTGGGAAGCAGAACTTAATAGGAAAGAAAAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAAAGGCATAGGGTTGTGCTTGGTCTTCAATGTTATTGCTATAACTGTCTGCTGGATAAGAGGCGGGGGAGTCACAATCTTTTTACTTGCTGTAATATATGCCATACTTGGAATTCCTCTTTCATATGTGCTATGGTATAGGCCTCTATACCGTGCTATGAGGTGA

Protein sequence

MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLRKNERDIAAWEAELNRKEKEIKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYRAMR
Homology
[Close]
BLAST of Carg23580 vs. NCBI nr
Match: XP_022923600.1 (secretory carrier-associated membrane protein 4-like [Cucurbita moschata])

HSP 1 Score: 261.5 bits (667), Expect = 1.6e-66
Identity = 142/183 (77.60%), Postives = 142/183 (77.60%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR
Sbjct: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60

Query: 61  KNERDIAAWEAELNRKEKEIKKREEAVSK------------------------------- 120
           KNERDIAAWEAELNRKEKEIKKREEAVSK                               
Sbjct: 61  KNERDIAAWEAELNRKEKEIKKREEAVSKAGVPTDDRNWPPFFPIIHHDIANEIPVHAQK 120

Query: 121 ----------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 143
                     GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 180

[Close]
BLAST of Carg23580 vs. NCBI nr
Match: XP_022965309.1 (secretory carrier-associated membrane protein 4-like [Cucurbita maxima])

HSP 1 Score: 260.4 bits (664), Expect = 3.6e-66
Identity = 141/183 (77.05%), Postives = 142/183 (77.60%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR
Sbjct: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60

Query: 61  KNERDIAAWEAELNRKEKEIKKREEAVSK------------------------------- 120
           KNERDIAAWEAELNRKEKEIKKREEAVS+                               
Sbjct: 61  KNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPVHAQK 120

Query: 121 ----------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 143
                     GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 180

[Close]
BLAST of Carg23580 vs. NCBI nr
Match: XP_023552124.1 (secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 8.0e-66
Identity = 140/183 (76.50%), Postives = 142/183 (77.60%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMI+DTLGFGQKQDATVDIPLDTMNNLR
Sbjct: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMITDTLGFGQKQDATVDIPLDTMNNLR 60

Query: 61  KNERDIAAWEAELNRKEKEIKKREEAVSK------------------------------- 120
           KNERDIAAWEAELNRKEKEIKKREEAVS+                               
Sbjct: 61  KNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPVHAQK 120

Query: 121 ----------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 143
                     GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 180

[Close]
BLAST of Carg23580 vs. NCBI nr
Match: XP_017234947.1 (PREDICTED: secretory carrier-associated membrane protein 4 isoform X2 [Daucus carota subsp. sativus])

HSP 1 Score: 199.9 bits (507), Expect = 5.8e-48
Identity = 95/142 (66.90%), Postives = 120/142 (84.51%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           MNR +D NPFDE  VNPFS  NA PGSK RIP+M+++TLGFGQK DA VDIPLD+M + +
Sbjct: 1   MNRRDDQNPFDEEAVNPFSNGNADPGSKSRIPKMVANTLGFGQKNDANVDIPLDSMKDPK 60

Query: 61  KNERDIAAWEAELNRKEKEIKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVI 120
           K E+++AAW+AEL ++E+++K+RE+AV+ GI +CLVFN+IA+TVCWI+ GGV IF LA I
Sbjct: 61  KKEKELAAWDAELKKRERDLKRREDAVAGGINICLVFNLIAVTVCWIKHGGVKIFFLATI 120

Query: 121 YAILGIPLSYVLWYRPLYRAMR 143
           Y +LG PLSYVLWYRPLYRAMR
Sbjct: 121 YMLLGCPLSYVLWYRPLYRAMR 142

[Close]
BLAST of Carg23580 vs. NCBI nr
Match: XP_011074780.1 (secretory carrier-associated membrane protein 4 [Sesamum indicum])

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 107/185 (57.84%), Postives = 126/185 (68.11%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEG--EVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNN 60
           M R NDPNPFDEG  E+NPFS D AA GSK RIP++++ TLGFGQK DA VDIPLDTMN+
Sbjct: 1   MGRRNDPNPFDEGEPEINPFSNDTAAAGSKSRIPKVVASTLGFGQKNDANVDIPLDTMND 60

Query: 61  LRKNERDIAAWEAELNRKEKEIKKREEAVSK----------------------------- 120
            RK E+++A WE++LNR+E+EIK+RE+AV++                             
Sbjct: 61  PRKKEKELATWESDLNRREREIKRREDAVARAGVPVDDKNWPPCFPIIHHDIANEIPVPA 120

Query: 121 ------------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPL 143
                       GI LCLVFNVIAITVCWIRGGGV IF LA+IYA+LG PLSYVLWYRPL
Sbjct: 121 QRLQYLAFASWLGILLCLVFNVIAITVCWIRGGGVKIFFLAIIYALLGCPLSYVLWYRPL 180

[Close]
BLAST of Carg23580 vs. TAIR10
Match: AT1G32050.1 (SCAMP family protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-37
Identity = 93/185 (50.27%), Postives = 109/185 (58.92%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGE--VNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNN 60
           MNRH+DPNPFDE E  VNPFSK         R+P   S  + +GQ  DATVDIPLD MN+
Sbjct: 1   MNRHHDPNPFDEDEEIVNPFSKGGG------RVP-AASRPVEYGQSLDATVDIPLDNMND 60

Query: 61  LRKNERDIAAWEAELNRKEKEIKKREEAVSK----------------------------- 120
             + +R +A WEAEL +KE +IK+REEA++K                             
Sbjct: 61  SSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHA 120

Query: 121 ------------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPL 143
                       GI LCLVFNVIA  VCWI+GGGV IF LA IYA++G PLSYVLWYRPL
Sbjct: 121 QKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPL 178

[Close]
BLAST of Carg23580 vs. TAIR10
Match: AT1G61250.1 (secretory carrier 3)

HSP 1 Score: 73.9 bits (180), Expect = 8.7e-14
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 90  GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYRAMR 143
           G+ LCL +N+IA+T  WI+G GVTI+LLA+IY I G+P  YVLWYRPLYRA R
Sbjct: 133 GLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPLYRAFR 185

[Close]
BLAST of Carg23580 vs. TAIR10
Match: AT1G03550.1 (Secretory carrier membrane protein (SCAMP) family protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-13
Identity = 64/184 (34.78%), Postives = 88/184 (47.83%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVN-PFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNL 60
           M RH DPNPF + E+N   +  +  P S   +  +  +    G    ATVDIPLD+ N+L
Sbjct: 1   MARH-DPNPFADEEINXXXNHTSVPPASNSYLKPLPPEPYDRG----ATVDIPLDSGNDL 60

Query: 61  RKNERDIAAWE------------------------AELNRKE----------KEI----- 120
           R  E                                E N  E           EI     
Sbjct: 61  RAKEMXXXXXXXXXXXXXXXXXXXXXXXXXXGVVIEEKNWPEFFPLIHHDIPNEIPIHLQ 120

Query: 121 KKREEAVSKGIGL--CLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLY 143
           K +  A +  +GL  CL++N++A+TV WI+G G TI+LL++IY + G+P +YVLWYRPLY
Sbjct: 121 KIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLY 179

[Close]
BLAST of Carg23580 vs. TAIR10
Match: AT2G20840.1 (Secretory carrier membrane protein (SCAMP) family protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-13
Identity = 56/186 (30.11%), Postives = 89/186 (47.85%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           M+R+   + FD+GE+NPF+   + P +  ++  +  +    G    AT+DIPLD+  +L+
Sbjct: 1   MSRYQS-HSFDDGEINPFANPTSVPAATSKLSPLPPEPYDRG----ATMDIPLDSGKDLK 60

Query: 61  ------------------------------------KN--------ERDIAAWEAELNRK 120
                                               KN          DI+    E+   
Sbjct: 61  AKXXXXXXXXXXXXXXXXXXXXXXXXXXXAGIVIEEKNWPPFFPLIHHDIS---NEIPIH 120

Query: 121 EKEIKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRP 143
            + I+        G+ +CL++N++A+T  WI+G G TI+ LA+IY I G+P +YV+WYRP
Sbjct: 121 LQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRP 178

[Close]
BLAST of Carg23580 vs. TAIR10
Match: AT1G11180.2 (Secretory carrier membrane protein (SCAMP) family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 65/202 (32.18%), Postives = 87/202 (43.07%), Query Frame = 0 

Query: 1   MNRHNDPNPFDE-GEVNPFSKDNAAP-GSKFRIPQMISDTLGFGQKQDATVDIPLDT--- 60
           M    D N FDE  EVNPF+   + P  S  R+  +  +  GFG  +  TVDIPLD    
Sbjct: 1   MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFGYGR--TVDIPLDRPGS 60

Query: 61  --------------MNNLRKNER------------------------------DIAAWEA 120
                         + +L+K E                               +   W  
Sbjct: 61  GAQNNSCLNVTLLGIQDLKKKEXXXXXXXXXXXXXXXXXXXXXXXAARAGIVIEAKNWPT 120

Query: 121 -----------ELNRKEKEIKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVI 143
                      E+  + + ++    A   G+ L L +N+IA+T  WI+G GVTI+LLAVI
Sbjct: 121 FFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVI 180

[Close]
BLAST of Carg23580 vs. Swiss-Prot
Match: sp|Q9C6X2|SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=SCAMP4 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-36
Identity = 93/185 (50.27%), Postives = 109/185 (58.92%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGE--VNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNN 60
           MNRH+DPNPFDE E  VNPFSK         R+P   S  + +GQ  DATVDIPLD MN+
Sbjct: 1   MNRHHDPNPFDEDEEIVNPFSKGGG------RVP-AASRPVEYGQSLDATVDIPLDNMND 60

Query: 61  LRKNERDIAAWEAELNRKEKEIKKREEAVSK----------------------------- 120
             + +R +A WEAEL +KE +IK+REEA++K                             
Sbjct: 61  SSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHA 120

Query: 121 ------------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPL 143
                       GI LCLVFNVIA  VCWI+GGGV IF LA IYA++G PLSYVLWYRPL
Sbjct: 121 QKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPL 178

[Close]
BLAST of Carg23580 vs. Swiss-Prot
Match: sp|Q0JAI9|SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-19
Identity = 67/186 (36.02%), Postives = 90/186 (48.39%), Query Frame = 0 

Query: 4   HNDPNPFDEGEV--NPFSKDNAAPGSKFRIPQ---MISDTLGFGQ-KQDATVDIPLDTMN 63
           H+DPNPFDEG    NPFS                   ++  GFG  + DATVD+PLDTM 
Sbjct: 2   HHDPNPFDEGNADDNPFSXXXXXXXXXXXXXXYGFRPTEPAGFGAGRGDATVDVPLDTMG 61

Query: 64  NLRKNERDIAAWEA-----------------------------------------ELNRK 123
           + +   R++++WE                                          E+   
Sbjct: 62  DSKSKARELSSWETXXXXXXXXXXXXXXXXXNAGVPMEDKNWPPFFPIIHHDIANEIPAN 121

Query: 124 EKEIKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRP 143
            ++++    A   GI LCL +N IA+ VCWI+ G   +F LA IYA+LGIPLSY++WYRP
Sbjct: 122 LQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRP 181

[Close]
BLAST of Carg23580 vs. Swiss-Prot
Match: sp|Q6Z8F5|SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.9e-16
Identity = 63/194 (32.47%), Postives = 84/194 (43.30%), Query Frame = 0 

Query: 4   HNDPNPFDEG-EVNPFSKDNAAPGSKFRIPQMISDTLGFGQK-------------QDATV 63
           H+DPNPFDEG + NPFS                        +               ATV
Sbjct: 2   HHDPNPFDEGADDNPFSXXXXXXXXXXXXXXXXXXXXXXXSQFSFXXXXXXXXXXXXATV 61

Query: 64  DIPLDTMNNLRKNERDIAAWEA-------------------------------------- 123
           DIPLD M++ +   +++  WEA                                      
Sbjct: 62  DIPLDNMSDSKGKGKELLQWEADXXXXXXXXXXXXXXXXSAGVPMEEKNWPPFFPIIHHD 121

Query: 124 ---ELNRKEKEIKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPL 143
              E+    ++++    A   GI LCL +N IA+ VCWIRGG   +F LA IY +LG+PL
Sbjct: 122 IANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIRGGDSKLFFLATIYGMLGMPL 181

[Close]
BLAST of Carg23580 vs. Swiss-Prot
Match: sp|Q9ZTX0|SCAM_PEA (Secretory carrier-associated membrane protein OS=Pisum sativum OX=3888 GN=PSAM2 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 60/179 (33.52%), Postives = 82/179 (45.81%), Query Frame = 0 

Query: 6   DPNPFDEGEVNPFSKD-NAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLRKNER 65
           DPNPFDE +VNPFS   +AA  +  R   +  D   +      TVDIPLDT  + +K ER
Sbjct: 6   DPNPFDEEQVNPFSNPRSAASATNSRPAPLNPDRADYNYGFGPTVDIPLDTSTDGKKKER 65

Query: 66  ------------------------------DIAAWEA-----------ELNRKEKEIKKR 125
                                         +   W             E+    + ++  
Sbjct: 66  XXXXXXXXXXXXXXXXXXXXXXXXXXGIVIEEKNWPPFFPIIHHDITNEIPIHLRTLQYV 125

Query: 126 EEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYRAMR 143
                 G+ LCL +NV+++T  WI+G GV I+ LA+IY I G+P +Y LWYRPLYRA R
Sbjct: 126 AFFSLLGLVLCLTWNVVSVTAAWIKGEGVKIWFLAIIYFIAGVPGAYALWYRPLYRAFR 184

[Close]
BLAST of Carg23580 vs. Swiss-Prot
Match: sp|Q9SXA5|SCAM5_ARATH (Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana OX=3702 GN=SCAMP5 PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 65/189 (34.39%), Postives = 86/189 (45.50%), Query Frame = 0 

Query: 1   MNRHNDPNPFDE-GEVNPFSKDNAAP-GSKFRIPQMISDTLGFGQKQDATVDIPLDT--- 60
           M    D N FDE  EVNPF+   + P  S  R+  +  +  GFG  +  TVDIPLD    
Sbjct: 1   MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFGYGR--TVDIPLDRPGS 60

Query: 61  -MNNLRKNER------------------------------DIAAWEA-----------EL 120
              +L+K E                               +   W             E+
Sbjct: 61  GAQDLKKKEXXXXXXXXXXXXXXXXXXXXXXXAARAGIVIEAKNWPTFFPLIHHDIANEI 120

Query: 121 NRKEKEIKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLW 143
             + + ++    A   G+ L L +N+IA+T  WI+G GVTI+LLAVIY I G+P  YVLW
Sbjct: 121 LVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLW 180

[Close]
BLAST of Carg23580 vs. TrEMBL
Match: tr|A0A2R6PHR2|A0A2R6PHR2_ACTCH (Secretory carrier-associated membrane protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc28733 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.5e-47
Identity = 106/183 (57.92%), Postives = 126/183 (68.85%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           MN  NDPNPFDE EVNPFSK ++APGSK RIPQM++ TLGFGQK DATVDIPLDTMN+ +
Sbjct: 1   MNSRNDPNPFDE-EVNPFSKGSSAPGSKSRIPQMVAQTLGFGQKHDATVDIPLDTMNDGK 60

Query: 61  KNERDIAAWEAELNRKEKEIKKREEAVSK------------------------------- 120
             E+++AAW+A+L R+E+EIK+RE+AV+                                
Sbjct: 61  SKEKELAAWDADLKRREREIKRREDAVASAGVPADDRNWPPFFPIIHHDIANEIPVHAQK 120

Query: 121 ----------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 143
                     GI LCLVFNV+A+TVCWIRGGGV IF LA+IYA+LG PLSYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIVLCLVFNVVAVTVCWIRGGGVKIFFLAIIYALLGCPLSYVLWYRPLYR 180

[Close]
BLAST of Carg23580 vs. TrEMBL
Match: tr|A0A1S3BK39|A0A1S3BK39_CUCME (Secretory carrier-associated membrane protein OS=Cucumis melo OX=3656 GN=LOC103490740 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-46
Identity = 110/183 (60.11%), Postives = 120/183 (65.57%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           MNRHNDPNPFDE EVNPFSK   APGSKFRIPQM+SDTLGFGQK DATVDIPLDTMN+ +
Sbjct: 1   MNRHNDPNPFDEEEVNPFSKGGGAPGSKFRIPQMVSDTLGFGQKHDATVDIPLDTMNDPK 60

Query: 61  KNERDIAAWEA-----------------------------------------ELNRKEKE 120
           K ER++AAWEA                                         E+    ++
Sbjct: 61  KKERELAAWEAXXXXXXXXXXXXXXXXSKAGVPADDRNWPPFFPIIHHDIANEIPVHAQK 120

Query: 121 IKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 143
           ++    A   GI LCL FNVIAITVCWIRGGGV IF LAVIYAILGIPLSYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIVLCLFFNVIAITVCWIRGGGVKIFFLAVIYAILGIPLSYVLWYRPLYR 180

[Close]
BLAST of Carg23580 vs. TrEMBL
Match: tr|A0A0A0L3U1|A0A0A0L3U1_CUCSA (Secretory carrier-associated membrane protein OS=Cucumis sativus OX=3659 GN=Csa_3G006700 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.5e-44
Identity = 107/183 (58.47%), Postives = 118/183 (64.48%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           MNRHNDPNPFDE  VNPFSK   APGSKFRIPQM+S+TLGFGQK DATVDIPLDTMN+ +
Sbjct: 1   MNRHNDPNPFDEEGVNPFSKGGGAPGSKFRIPQMVSETLGFGQKHDATVDIPLDTMNDPK 60

Query: 61  KNERDIAAWEA-----------------------------------------ELNRKEKE 120
           K ER++AAW                                           E+    ++
Sbjct: 61  KKERELAAWXXXXXXXXXXXXXXXXXXXXAGVPADDRNWPPFFPIIHHDIANEIPVHAQK 120

Query: 121 IKKREEAVSKGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 143
           ++    A   GI LCLVFNVIAITVCWIRGGGV IF LAVIYAILGIPLSYVLWYRPLYR
Sbjct: 121 LQYLAFASWLGIVLCLVFNVIAITVCWIRGGGVKIFFLAVIYAILGIPLSYVLWYRPLYR 180

[Close]
BLAST of Carg23580 vs. TrEMBL
Match: tr|A0A2G9FZP0|A0A2G9FZP0_9LAMI (Secretory carrier-associated membrane protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_28982 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 7.5e-44
Identity = 104/185 (56.22%), Postives = 124/185 (67.03%), Query Frame = 0 

Query: 1   MNRHNDPNPFDE--GEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNN 60
           MNR NDPNPFDE   EVNPF+    A GSK RIP++++ TLGFGQK DATVDIPLDTMN+
Sbjct: 1   MNRGNDPNPFDEEQPEVNPFAN---AAGSKSRIPKVVASTLGFGQKHDATVDIPLDTMND 60

Query: 61  LRKNERDIAAWEAELNRKEKEIKKREEAVSK----------------------------- 120
            +K E+++A WEA+LN++E+EIK+RE+AV+                              
Sbjct: 61  SKKKEKELANWEADLNKREREIKRREDAVASAGVPVDDRNWPPFFPIIHHDIANEIPVHA 120

Query: 121 ------------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPL 143
                       GI LCLVFNV+AITVCWIRGGG  IFLLAVIYA++G PLSYVLWYRPL
Sbjct: 121 QKLQYLAFASWLGIVLCLVFNVVAITVCWIRGGGAKIFLLAVIYALMGCPLSYVLWYRPL 180

[Close]
BLAST of Carg23580 vs. TrEMBL
Match: tr|A0A1U7VVR0|A0A1U7VVR0_NICSY (Secretory carrier-associated membrane protein OS=Nicotiana sylvestris OX=4096 GN=LOC104217457 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.3e-43
Identity = 101/185 (54.59%), Postives = 121/185 (65.41%), Query Frame = 0 

Query: 1   MNRHNDPNPFDEGE--VNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNN 60
           M++ NDPNPFDE E  +NPFS   +AP +K R PQMI+ TLGFGQK DATVDIPLD+MN+
Sbjct: 1   MSKGNDPNPFDEEEPQINPFSNGGSAPATKSRFPQMIASTLGFGQKNDATVDIPLDSMND 60

Query: 61  LRKNERDIAAWEAELNRKEKEIKKREEAVSK----------------------------- 120
            +K ++++AAW  +L RKE+EIK+RE+AV+                              
Sbjct: 61  PKKRQKELAAWAEDLERKEREIKRREDAVASAGVPTNDKNWPPFFPIIHHDIANEIPVHA 120

Query: 121 ------------GIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPL 143
                       GI LCLVFNVIA+TVCWIR GGV IFLLAVIYA+LG PLSYVLWYRPL
Sbjct: 121 QRMQYLAFASWLGIVLCLVFNVIAVTVCWIRDGGVKIFLLAVIYALLGCPLSYVLWYRPL 180

The following BLAST results are available for this feature:
BLAST of Carg23580 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923600.11.6e-6677.60secretory carrier-associated membrane protein 4-like [Cucurbita moschata][more]
XP_022965309.13.6e-6677.05secretory carrier-associated membrane protein 4-like [Cucurbita maxima][more]
XP_023552124.18.0e-6676.50secretory carrier-associated membrane protein 4-like [Cucurbita pepo subsp. pepo... [more]
XP_017234947.15.8e-4866.90PREDICTED: secretory carrier-associated membrane protein 4 isoform X2 [Daucus ca... [more]
XP_011074780.12.9e-4757.84secretory carrier-associated membrane protein 4 [Sesamum indicum][more]
BLAST of Carg23580 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32050.11.1e-3750.27SCAMP family protein[more]
AT1G61250.18.7e-1466.04secretory carrier 3[more]
AT1G03550.13.3e-1334.78Secretory carrier membrane protein (SCAMP) family protein[more]
AT2G20840.13.3e-1330.11Secretory carrier membrane protein (SCAMP) family protein[more]
AT1G11180.21.3e-1232.18Secretory carrier membrane protein (SCAMP) family protein[more]
BLAST of Carg23580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C6X2|SCAM4_ARATH2.0e-3650.27Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana OX=3702 ... [more]
sp|Q0JAI9|SCAM6_ORYSJ2.3e-1936.02Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica ... [more]
sp|Q6Z8F5|SCAM5_ORYSJ8.9e-1632.47Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica ... [more]
sp|Q9ZTX0|SCAM_PEA1.7e-1433.52Secretory carrier-associated membrane protein OS=Pisum sativum OX=3888 GN=PSAM2 ... [more]
sp|Q9SXA5|SCAM5_ARATH1.2e-1234.39Secretory carrier-associated membrane protein 5 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Carg23580 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2R6PHR2|A0A2R6PHR2_ACTCH2.5e-4757.92Secretory carrier-associated membrane protein OS=Actinidia chinensis var. chinen... [more]
tr|A0A1S3BK39|A0A1S3BK39_CUCME1.6e-4660.11Secretory carrier-associated membrane protein OS=Cucumis melo OX=3656 GN=LOC1034... [more]
tr|A0A0A0L3U1|A0A0A0L3U1_CUCSA1.5e-4458.47Secretory carrier-associated membrane protein OS=Cucumis sativus OX=3659 GN=Csa_... [more]
tr|A0A2G9FZP0|A0A2G9FZP0_9LAMI7.5e-4456.22Secretory carrier-associated membrane protein OS=Handroanthus impetiginosus OX=4... [more]
tr|A0A1U7VVR0|A0A1U7VVR0_NICSY6.3e-4354.59Secretory carrier-associated membrane protein OS=Nicotiana sylvestris OX=4096 GN... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
Vocabulary: INTERPRO
TermDefinition
IPR007273SCAMP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23580-RACarg23580-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 59..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR10687:SF15SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 4coord: 1..89
coord: 90..142
IPR007273SCAMPPFAMPF04144SCAMPcoord: 91..142
e-value: 7.2E-14
score: 52.4
IPR007273SCAMPPANTHERPTHR10687SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMPcoord: 1..89
coord: 90..142