Carg23554 (gene) Silver-seed gourd

Overview
NameCarg23554
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTHO complex subunit 3
LocationCucurbita_argyrosperma_scaffold_376 : 195817 .. 199606 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTAATCCCCCACATAAAAAGTGGGTGTTCGTATGGAACAAAAATCCCTATAATCGCCGGATTGGAACTCGTTGAATTCCCGGCGGACATGGAGGAATCGACGCCGGCTTTTAAGAATCTTTACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTTTTTTTTATCAAATCTCTTCCTTCGTGCTGTTCTTCTCTGTGGCGATTTCATTTTTCGTTTTGATCTTAAATTCATCTTTTCTTGTAACTGCGAAAGGTACATTCTGTGGCATGGAATTGCACTGGTATGAAGCTTGCTTCCGGTTCTGTCGATCAAACTGCTCGAGTTTGGCATATTGAGCCTCATGGACATGTATGCCTTCTATCACACTGTTTTTTTTTTTTTTTTTTTGTTCTAGGGTCTTCCCAATTCATTGTTTCTGTTGTGGAATCTTGAATCTTGGCCTCAAATTGATTGAATAGGGTTTTTTCCCTTTCTTTTTTTTGTTTTGGGTACTGTAAGTAGTTGATTCGAGCTTAAGTGTTATATTGAATTCTTCTATTCTGTTCTCCTTATGGGTTTTCTTTTCCTACGCCTGATATGATAAACATATAAACATTTATCTGTTTCCCAGGTAATGTTTTGGAGTTTCTACTACCTAGCACGAATGCTAACATTTCCTATCTCTTGCTCAACTTTTCTAGGCTGATAAAGTTTAGCTGCATTTCCTATAGTTGATTATGTGAATGAAGTTATGGAAAGAACTTTAATATTTGTATATATTTGTGTGTAGATATATATGTGTGTGTGTGTGTGCACATAAACTGGGTATGTGAGCTCCATGCTCATGGCCTACCTTCGAGGTTTTGCCCACTACAAGGCCAATTTCGAGGGACAACAAGATATTTAGTTACTAAGGAAATAGAATAAGCTAATGATCTTCGTCGAACGGGATATGTTCTATATGTTGTTCGACCGTATCCTTGAGTTCTATAAAAAGGAGAGAGAATGATCCTTCTTGGCTCGGAATTGTATCAGTAGACTAATTACTGTTTCATAAGCTCTTTCATTTTCCTTATTTTTAAGTTCTGGAAAACGCGGAGTGCAATTTGCTTAATTCTCTTGCCGTGTATACTTGTGAGAGTGTGTTGCGTTTGCTACCTCCCAAGACCTGTTTTGAATGAATTCTATGATTTTGCTATGGTGCTGTTCCACCACAGGGTTTAGTGTTGTCTTGTTTGTATCTATTTACTTTCAACCCTGAACAAATCATTTCAATCATGTCAGATGATGTTTGCTTCAGGGTAAGGTTAAGGATGTCGAGTTGAAAGGGCATACTGATAGTGTAGATCAGCTATGTTGGGATCCTAAACATTCTGATCTTATAGCAACCGCCTCTGGTGACAAGACGGTTCGACTATGGGATGCTCGTAGTAAGTGTTTGAAACTGAGATTTGTGAAGTAACTGATGTAATTGATGTTTAGAATATGGCTCATAATTTCTGATTCTGTTCCCTAGATGGGAAATGCTCACAGCAAGCTGAGCTGAGTGGGGAGAATATAAACATCACCTACAAGCCTGATGGGACGCACATAGCTGTTGGGAATAGGGTATGTTCTAGAGTGAAATTTGTGCATCATAAAACCAATTTAGATTTGTTATTGCTTTAATGTACGCGGCAAGATGTTTATATCCGTGTGTAACTACTTGACTAATTTAGATTTGTCATTTTGCAGGATGATGAACTCACTATACTGGATGTTAGGAAGTTTAAGCCAGTTCACAAGCGCAAGTTCAATTACGAGGTAACGTTTATGTTACAATCAACAACAATGACTCGACCATTGGTCATTTATGACAACTTAAAAGGAGGATTGTGTATTAAGAAATTGAACAAATCACAACAGGACATAATAGCATGCATATGACTGCTTTGTCATGTTGATGATCCTCTTCTTACCTTTAAAATTGTAAGTCCAATTGTATTAGAGGCTGTTTTTGCTCTGTTCTTGTAAATAGTGTGACAATATGGACCATTTGTCGGGTTGATTAGTAACTAGTACAGGCGGGAATTTATAGTAGTATATGCCAAGTCTTATGTGAAGGGAGAAGACGTGCCTAGCTTGAGTTCGATATTCTAGTGCGTATAGGGAACTTTCTAAATAACCCTTAAGCTTTCTCCGTTCTCTTGAAATGTAGTAGATTCTAATTCTATCAACCCCTTCGTATCTACCGCCTTTCTTTCCAGTTTCAGTTCGTTTTTTTTTTCTCTTTTGCTTTTGGCAGACATGTTTGTTTTACTTTGATTATCTATATTGACATAATTTTCTATTATCTTTTCCAGGTGAACGAAATTGCTTGGAACATGACTGGGGAAATGTTTTTCCTGACAACTGGAAATGGTGATGATCTGCAGCTATGACCCTTTCTTTTCATGCCATGACTGAGGAGATTTTGTTAATTTCACTCTATTGAATAAATTTTCATGTCTACTTCTTGTGCTCAGGTACCGTTGAAGTACTTGCATACCCGTCACTTCGACCTATTGAAACTCTTATGGCTCACACAGCTGGTTGTTACTGCATTGCAATTGACCCGGTTGGAGGGTGAGATTCAAAGTTGACCTTAAGCGTATCTTCCACGATAAAAGAATCGCATGCAATATGCAGTCATGATTTCTTCTATTAGAAAGATTGTCGGTTCCATTCTTTCAATTGCTTGTTTCGATCGTTTAGAAAATTGCTTCTACAAGTAGCCATGGGGAAAGATAAATTAATTCCTTGTTTCATCATAGGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGATATCTCTCAGATGCTCTGCGTGCGAACATTTACAAAACTCGAGTAAGCTTTTTGTTTGGTTTATACAATGATTTTGTTTTCTTCTTGTCTCGATCCATTTCTATCCTGTCAATCGAAACACATCGGGAGCTTTGTGGCTTGGGTTACAACACTGCATTATGTAGCGACTTTTTTGAACACTGAAGAATGTATTTTCTTGTCACTTCTTTTACTTCCTTAGATGGCCTGTCCGAACTATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCTAGTGAGGACTTGTTCATTGATATAGTAAGCATTCTAGCGCCTCTCCTTTCTTTAAATATCCGTTCTATGAAGGCGTAGAATCCCCCCCCCCCCCCCCCCCCTCCTTGAGGATTAGTGGCAAAACTGGTTCATGAACGGTGTTTTTCTTTTGCGTACAGTCGAGTGTTCAATCGGGACGAACGGTTCATCAGATTCCTTGTCGGGCTGCTATGAATAGTGTGGAGTGGAATCCAAAGCACAATTTGCTTGCATATGCTGGGGATGACAAGAACAAGTATCAGGCTGATGAAGGCAAGTTATCTATGCGTCGATGTTTCCCACTGATCTTTTTAATTCAATGCATTCCTCCTAGGATCTTTGGGTTTGAAAGTGTTATCTTTATTTTGTTGTTGCAGGTATTTTTAGGATCTTTGGGTTTGAAAGTGCATGAGAAATGGATCCACTAGGATTCTCCATAGAATTCTACCATGGATCAACTTATCTTTATTCCCTTCTTTTCTGGTTAGTATTAGTATTGAATTCCATTTGTATGTTATGTTACCGAGGATTTTCCTTCTTTTCGCTTGAAAGGTTCGAAGTACTTTTGTGATCTGAAAAACAATCATTTGAGCTAGCAATGATGCTTACTTGCATTGGGGTCTTTTATCTACTTTTATTATTATTACTAGGAGATTGACTCTGGGTGAGATCCCACGTC

mRNA sequence

AATTAATCCCCCACATAAAAAGTGGGTGTTCGTATGGAACAAAAATCCCTATAATCGCCGGATTGGAACTCGTTGAATTCCCGGCGGACATGGAGGAATCGACGCCGGCTTTTAAGAATCTTTACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACTGGTATGAAGCTTGCTTCCGGTTCTGTCGATCAAACTGCTCGAGTTTGGCATATTGAGCCTCATGGACATGGTAAGGTTAAGGATGTCGAGTTGAAAGGGCATACTGATAGTGTAGATCAGCTATGTTGGGATCCTAAACATTCTGATCTTATAGCAACCGCCTCTGGTGACAAGACGGTTCGACTATGGGATGCTCGTAATGGGAAATGCTCACAGCAAGCTGAGCTGAGTGGGGAGAATATAAACATCACCTACAAGCCTGATGGGACGCACATAGCTGTTGGGAATAGGGATGATGAACTCACTATACTGGATGTTAGGAAGTTTAAGCCAGTTCACAAGCGCAAGTTCAATTACGAGGTGAACGAAATTGCTTGGAACATGACTGGGGAAATGTTTTTCCTGACAACTGGAAATGGTACCGTTGAAGTACTTGCATACCCGTCACTTCGACCTATTGAAACTCTTATGGCTCACACAGCTGGTTGTTACTGCATTGCAATTGACCCGGTTGGAGGGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGATATCTCTCAGATGCTCTGCGTGCGAACATTTACAAAACTCGAATGGCCTGTCCGAACTATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCTAGTGAGGACTTGTTCATTGATATATCGAGTGTTCAATCGGGACGAACGGTTCATCAGATTCCTTGTCGGGCTGCTATGAATAGTGTGGAGTGGAATCCAAAGCACAATTTGCTTGCATATGCTGGGGATGACAAGAACAAGTATCAGGCTGATGAAGGTATTTTTAGGATCTTTGGGTTTGAAAGTGCATGAGAAATGGATCCACTAGGATTCTCCATAGAATTCTACCATGGATCAACTTATCTTTATTCCCTTCTTTTCTGGTTAGTATTAGTATTGAATTCCATTTGTATGTTATGTTACCGAGGATTTTCCTTCTTTTCGCTTGAAAGGTTCGAAGTACTTTTGTGATCTGAAAAACAATCATTTGAGCTAGCAATGATGCTTACTTGCATTGGGGTCTTTTATCTACTTTTATTATTATTACTAGGAGATTGACTCTGGGTGAGATCCCACGTC

Coding sequence (CDS)

ATGGAGGAATCGACGCCGGCTTTTAAGAATCTTTACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTACATTCTGTGGCATGGAATTGCACTGGTATGAAGCTTGCTTCCGGTTCTGTCGATCAAACTGCTCGAGTTTGGCATATTGAGCCTCATGGACATGGTAAGGTTAAGGATGTCGAGTTGAAAGGGCATACTGATAGTGTAGATCAGCTATGTTGGGATCCTAAACATTCTGATCTTATAGCAACCGCCTCTGGTGACAAGACGGTTCGACTATGGGATGCTCGTAATGGGAAATGCTCACAGCAAGCTGAGCTGAGTGGGGAGAATATAAACATCACCTACAAGCCTGATGGGACGCACATAGCTGTTGGGAATAGGGATGATGAACTCACTATACTGGATGTTAGGAAGTTTAAGCCAGTTCACAAGCGCAAGTTCAATTACGAGGTGAACGAAATTGCTTGGAACATGACTGGGGAAATGTTTTTCCTGACAACTGGAAATGGTACCGTTGAAGTACTTGCATACCCGTCACTTCGACCTATTGAAACTCTTATGGCTCACACAGCTGGTTGTTACTGCATTGCAATTGACCCGGTTGGAGGGTATTTTGCAGTTGGAAGTGCTGATTCATTAGTTAGCCTATGGGATATCTCTCAGATGCTCTGCGTGCGAACATTTACAAAACTCGAATGGCCTGTCCGAACTATAAGTTTCAACCACACAGGAGAATACATTGCTTCTGCTAGTGAGGACTTGTTCATTGATATATCGAGTGTTCAATCGGGACGAACGGTTCATCAGATTCCTTGTCGGGCTGCTATGAATAGTGTGGAGTGGAATCCAAAGCACAATTTGCTTGCATATGCTGGGGATGACAAGAACAAGTATCAGGCTGATGAAGGTATTTTTAGGATCTTTGGGTTTGAAAGTGCATGA

Protein sequence

MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADEGIFRIFGFESA
Homology
[Close]
BLAST of Carg23554 vs. NCBI nr
Match: XP_022946738.1 (THO complex subunit 3 [Cucurbita moschata] >XP_023005479.1 THO complex subunit 3 [Cucurbita maxima] >XP_023540495.1 THO complex subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 661.0 bits (1704), Expect = 2.0e-186
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV
Sbjct: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 301 ADEGIFRIFGFESA 315
           ADEGIFRIFGFESA
Sbjct: 301 ADEGIFRIFGFESA 314

[Close]
BLAST of Carg23554 vs. NCBI nr
Match: XP_004149572.1 (PREDICTED: THO complex subunit 3 [Cucumis sativus] >XP_008449067.1 PREDICTED: THO complex subunit 3 [Cucumis melo] >KGN56047.1 hypothetical protein Csa_3G061010 [Cucumis sativus])

HSP 1 Score: 650.2 bits (1676), Expect = 3.6e-183
Identity = 308/313 (98.40%), Postives = 311/313 (99.36%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEES  AFKNL+SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 301 ADEGIFRIFGFES 314
           ADEGIFRIFGFES
Sbjct: 301 ADEGIFRIFGFES 313

[Close]
BLAST of Carg23554 vs. NCBI nr
Match: XP_022155009.1 (THO complex subunit 3 isoform X2 [Momordica charantia])

HSP 1 Score: 635.6 bits (1638), Expect = 9.1e-179
Identity = 299/314 (95.22%), Postives = 308/314 (98.09%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEE+   FKNL SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV
Sbjct: 1   MEEAALPFKNLQSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR+GKCSQQ ELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           TH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS
Sbjct: 121 THVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRP+ETLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPLETLMAHTAGCYCIAIDPVGAYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FN+TG+YIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Sbjct: 241 FNYTGKYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 301 ADEGIFRIFGFESA 315
           ADEGIFRIFGFESA
Sbjct: 301 ADEGIFRIFGFESA 314

[Close]
BLAST of Carg23554 vs. NCBI nr
Match: KCW68335.1 (hypothetical protein EUGRSUZ_F01999 [Eucalyptus grandis])

HSP 1 Score: 627.1 bits (1616), Expect = 3.2e-176
Identity = 293/314 (93.31%), Postives = 309/314 (98.41%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEE+ P FKNL SREYQGHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 63  MEEAIP-FKNLPSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 122

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 123 ELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 182

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           TH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNM+GEMFFLTTGNGTVEVLAYPS
Sbjct: 183 THVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMSGEMFFLTTGNGTVEVLAYPS 242

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRP++TLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDIS+MLCVRTFTKLEWPVRTIS
Sbjct: 243 LRPVDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 302

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FNHTG+Y+ASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQ
Sbjct: 303 FNHTGDYVASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 362

Query: 301 ADEGIFRIFGFESA 315
           ADEG+FRIFGFESA
Sbjct: 363 ADEGVFRIFGFESA 375

[Close]
BLAST of Carg23554 vs. NCBI nr
Match: XP_010061402.1 (PREDICTED: THO complex subunit 3 [Eucalyptus grandis])

HSP 1 Score: 627.1 bits (1616), Expect = 3.2e-176
Identity = 293/314 (93.31%), Postives = 309/314 (98.41%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEE+ P FKNL SREYQGHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 1   MEEAIP-FKNLPSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           TH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNM+GEMFFLTTGNGTVEVLAYPS
Sbjct: 121 THVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMSGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRP++TLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDIS+MLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPVDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FNHTG+Y+ASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQ
Sbjct: 241 FNHTGDYVASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 300

Query: 301 ADEGIFRIFGFESA 315
           ADEG+FRIFGFESA
Sbjct: 301 ADEGVFRIFGFESA 313

[Close]
BLAST of Carg23554 vs. TAIR10
Match: AT5G56130.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 581.6 bits (1498), Expect = 2.8e-166
Identity = 270/315 (85.71%), Postives = 297/315 (94.29%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEE+T  FK+L+SREYQGHKKKVHSVAWN  G KLASGSVDQTAR+W+IEPHGH K KD+
Sbjct: 1   MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDAR+GKC+QQ ELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           TH+AVGNRDDELTILDVRKFKP+H+RKFNYEVNEIAWNM G+ FFLTTG GTVEVL+YPS
Sbjct: 121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPS 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           L+P++TL AHTAGCYCIAIDP G YFAVGSADSLVSLWDIS MLC+RTFTKLEWPVRTIS
Sbjct: 181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KY 300
           FN++GEYIASASEDLFIDI++VQ+GRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY
Sbjct: 241 FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKY 300

Query: 301 QADEGIFRIFGFESA 315
             DEG+FRIFGFES+
Sbjct: 301 NTDEGVFRIFGFESS 315

[Close]
BLAST of Carg23554 vs. TAIR10
Match: AT4G32551.2 (LisH dimerisation motif;WD40/YVTN repeat-like-containing domain)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-11
Identity = 54/248 (21.77%), Postives = 102/248 (41.13%), Query Frame = 0 

Query: 19  HKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKH 78
           H   +  + ++ + ++LA+ S D+T RVW  +  G+         GH+  V  L + P  
Sbjct: 730 HTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKGYSL---RTFMGHSSMVTSLDFHPIK 789

Query: 79  SDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
            DLI +   D  +R W   NG C++     G +  I ++P        +  + + +LDV 
Sbjct: 790 DDLICSCDNDNEIRYWSINNGSCTR--VYKGGSTQIRFQPRVGKYLAASSANLVNVLDVE 849

Query: 139 KFKPVHKRKFNYE-VNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTAGC--- 198
                H  + +   +N + W+ +G+ F  +     V+V    +    E    H   C   
Sbjct: 850 TQAIRHSLQGHANPINSVCWDPSGD-FLASVSEDMVKVWTLGT--GSEGECVHELSCNGN 909

Query: 199 ---YCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASA 258
               C+          +G   SL  LW++S+   + T    E  + +++ +     +ASA
Sbjct: 910 KFQSCVFHPAYPSLLVIGCYQSL-ELWNMSENKTM-TLPAHEGLITSLAVSTATGLVASA 967

Query: 259 SEDLFIDI 260
           S D  + +
Sbjct: 970 SHDKLVKL 967

[Close]
BLAST of Carg23554 vs. TAIR10
Match: AT5G50230.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 56/218 (25.69%), Postives = 95/218 (43.58%), Query Frame = 0 

Query: 46  VWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQA 105
           VW +     G+V+   L GHTD V  +      S  + +A+ D+T++LWD   G C+   
Sbjct: 293 VWDV---SSGRVRHT-LTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTV 352

Query: 106 ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPVHK-RKFNYEVNEIAWNMTGEMF 165
             +     I    DG  +  G+ D  L + D++  K + +    +  V  ++ +  G   
Sbjct: 353 LFTSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNR- 412

Query: 166 FLTTGNGTV-EVLAYPSLRPIETLMAH----TAGCYCIAIDPVGGYFAVGSADSLVSLWD 225
            LT+G   V  V    +L    TL A      +      I P   Y A GSAD  V +W 
Sbjct: 413 ILTSGRDNVHNVFDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWS 472

Query: 226 ISQMLCVRTFTKLEWPVRTISFNHTGEYIASASEDLFI 258
           +S+   V    +   P+   S++  G+ +ASA ++ ++
Sbjct: 473 LSKGNIVSILKEQTSPILCCSWSGIGKPLASADKNGYV 505

[Close]
BLAST of Carg23554 vs. TAIR10
Match: AT2G33340.1 (MOS4-associated complex 3B)

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10
Identity = 68/268 (25.37%), Postives = 111/268 (41.42%), Query Frame = 0 

Query: 35  LASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLW 94
           +A+G VD TA ++       G++    L GH+  V  + +    SDL+ TAS DKTVR+W
Sbjct: 237 IATGGVDATAVLF---DRPSGQILST-LTGHSKKVTSVKF-VGDSDLVLTASADKTVRIW 296

Query: 95  DARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPVHKRKFNYEVNE 154
             RN                    DG +      +D    +      P +K    Y V+ 
Sbjct: 297 --RN------------------PGDGNYACGYTLNDHSAEVRAVTVHPTNK----YFVSA 356

Query: 155 IAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSL 214
              ++ G   F    +G+         + ++    +TA     A  P G     G++ S+
Sbjct: 357 ---SLDGTWCFYDLSSGSCLAQVSDDSKNVD----YTAA----AFHPDGLILGTGTSQSV 416

Query: 215 VSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASASED--LFIDISSVQSGRTVHQIP 274
           V +WD+     V  F      V  ISF+  G ++A+A+ED     D+  +++ ++     
Sbjct: 417 VKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRLWDLRKLRNFKSF---- 460

Query: 275 CRAAMNSVEWNPKHNLLAYAGDDKNKYQ 301
             A  NSVE++P  + L  A  D   YQ
Sbjct: 477 LSADANSVEFDPSGSYLGIAASDIKVYQ 460

[Close]
BLAST of Carg23554 vs. TAIR10
Match: AT1G04510.1 (MOS4-associated complex 3A)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-09
Identity = 64/273 (23.44%), Postives = 110/273 (40.29%), Query Frame = 0 

Query: 35  LASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLW 94
           +A+G +D TA ++       G++    L GH+  V  + +    +DL+ TAS DKTVR+W
Sbjct: 237 IATGGIDTTAVLF---DRPSGQILST-LTGHSKKVTSIKF-VGDTDLVLTASSDKTVRIW 296

Query: 95  D-ARNGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILD------VRKFKPVH 154
             + +G  + +  L   S E   +T      +    + D      D      + +     
Sbjct: 297 GCSEDGNYTSRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAQVTDAS 356

Query: 155 KRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTAGCYCIAIDPVGG 214
           +   NY     A++  G +    T    V++    S   +     H      I+     G
Sbjct: 357 ENDVNY--TAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSE-NG 416

Query: 215 YFAVGSADSLVSLWDISQMLCVRTFTKLEWP-VRTISFNHTGEYIASASEDLFIDISSVQ 274
           YF   +A   V LWD+ ++   RTF   ++P   ++ F+H+G Y+  A+ D+ +      
Sbjct: 417 YFLATAALDGVRLWDLRKLKNFRTF---DFPDANSVEFDHSGSYLGIAASDIRV------ 476

Query: 275 SGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDK 297
                     +AA    EWNP   L   +G  K
Sbjct: 477 ---------FQAASVKAEWNPIKTLPDLSGTGK 483

[Close]
BLAST of Carg23554 vs. Swiss-Prot
Match: sp|Q9FKT5|THOC3_ARATH (THO complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=THO3 PE=1 SV=1)

HSP 1 Score: 581.6 bits (1498), Expect = 5.1e-165
Identity = 270/315 (85.71%), Postives = 297/315 (94.29%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEE+T  FK+L+SREYQGHKKKVHSVAWN  G KLASGSVDQTAR+W+IEPHGH K KD+
Sbjct: 1   MEETTIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDL 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDAR+GKC+QQ ELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQVELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           TH+AVGNRDDELTILDVRKFKP+H+RKFNYEVNEIAWNM G+ FFLTTG GTVEVL+YPS
Sbjct: 121 THVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPS 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           L+P++TL AHTAGCYCIAIDP G YFAVGSADSLVSLWDIS MLC+RTFTKLEWPVRTIS
Sbjct: 181 LKPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KY 300
           FN++GEYIASASEDLFIDI++VQ+GRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKN KY
Sbjct: 241 FNYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKY 300

Query: 301 QADEGIFRIFGFESA 315
             DEG+FRIFGFES+
Sbjct: 301 NTDEGVFRIFGFESS 315

[Close]
BLAST of Carg23554 vs. Swiss-Prot
Match: sp|Q29RH4|THOC3_BOVIN (THO complex subunit 3 OS=Bos taurus OX=9913 GN=THOC3 PE=2 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 3.7e-91
Identity = 153/301 (50.83%), Postives = 212/301 (70.43%), Query Frame = 0 

Query: 13  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQL
Sbjct: 48  TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQL 107

Query: 73  CWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R  KC       GENINI + PDG  IAVGN+DD +
Sbjct: 108 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 167

Query: 133 TILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTA 192
           T +D +  +   + +F +EVNEI+WN    MFFLT GNG + +L+YP L+P++++ AH +
Sbjct: 168 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 227

Query: 193 GCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASAS 252
            C CI  DP+G YFA GSAD+LVSLWD+ +++CVR F++L+WPVRT+SF+H G+ +ASAS
Sbjct: 228 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 287

Query: 253 EDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRIF 311
           ED FIDI+ V++G  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++F
Sbjct: 288 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 346

[Close]
BLAST of Carg23554 vs. Swiss-Prot
Match: sp|Q8VE80|THOC3_MOUSE (THO complex subunit 3 OS=Mus musculus OX=10090 GN=Thoc3 PE=2 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 3.7e-91
Identity = 153/301 (50.83%), Postives = 212/301 (70.43%), Query Frame = 0 

Query: 13  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQL
Sbjct: 48  TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQL 107

Query: 73  CWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R  KC       GENINI + PDG  IAVGN+DD +
Sbjct: 108 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 167

Query: 133 TILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTA 192
           T +D +  +   + +F +EVNEI+WN    MFFLT GNG + +L+YP L+P++++ AH +
Sbjct: 168 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 227

Query: 193 GCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASAS 252
            C CI  DP+G YFA GSAD+LVSLWD+ +++CVR F++L+WPVRT+SF+H G+ +ASAS
Sbjct: 228 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 287

Query: 253 EDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRIF 311
           ED FIDI+ V++G  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++F
Sbjct: 288 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 346

[Close]
BLAST of Carg23554 vs. Swiss-Prot
Match: sp|Q96J01|THOC3_HUMAN (THO complex subunit 3 OS=Homo sapiens OX=9606 GN=THOC3 PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 4.9e-91
Identity = 153/301 (50.83%), Postives = 212/301 (70.43%), Query Frame = 0 

Query: 13  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQL 72
           +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQL
Sbjct: 48  TREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQL 107

Query: 73  CWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
           CW P + DL  TASGDKT+R+WD R  KC       GENINI + PDG  IAVGN+DD +
Sbjct: 108 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 167

Query: 133 TILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRPIETLMAHTA 192
           T +D +  +   + +F +EVNEI+WN    MFFLT GNG + +L+YP L+P++++ AH +
Sbjct: 168 TFIDAKTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPS 227

Query: 193 GCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNHTGEYIASAS 252
            C CI  DP+G YFA GSAD+LVSLWD+ +++CVR F++L+WPVRT+SF+H G+ +ASAS
Sbjct: 228 NCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASAS 287

Query: 253 EDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN-KYQA--DEGIFRIF 311
           ED FIDI+ V++G  + ++ C +   +V W+PK  LLA+A DDK+ KY +  + G  ++F
Sbjct: 288 EDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLF 346

[Close]
BLAST of Carg23554 vs. Swiss-Prot
Match: sp|Q9USL1|YJKA_SCHPO (Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC18B5.10c PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.5e-60
Identity = 104/295 (35.25%), Postives = 176/295 (59.66%), Query Frame = 0 

Query: 3   ESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVEL 62
           ES P F  L +R+ QG +  + S+ WN +G +LAS S   +  VW+ +        ++  
Sbjct: 7   ESLPKFPELKTRDLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGN 66

Query: 63  KGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTH 122
           +G+   V+QL WDP HSD +      K +R WD R+ K   + E + ENI  T+ P G +
Sbjct: 67  RGY-GLVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPIAEIESNYENIYATWSPSGNY 126

Query: 123 IAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLR 182
               +RDD L+ +D R+ + +   +   E NE  W+ + ++FF+TTG GTV+++ +PSL+
Sbjct: 127 CCASSRDDMLSFIDARERRIMETFQQPCETNECCWSFSEDLFFMTTGLGTVQIMEWPSLK 186

Query: 183 PIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFN 242
            +  + AH + C+CI   P   + A+G AD++ SLWD  +++C R+ T++++P+RT+SF+
Sbjct: 187 RVYDIKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFS 246

Query: 243 HTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKN 298
           +   Y+AS SED ++DI+  ++G  + +IP    +N V W+P  ++LAYA  + N
Sbjct: 247 YDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYAVSEPN 300

[Close]
BLAST of Carg23554 vs. TrEMBL
Match: tr|A0A1S3BM38|A0A1S3BM38_CUCME (THO complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103491048 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 2.4e-183
Identity = 308/313 (98.40%), Postives = 311/313 (99.36%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEES  AFKNL+SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 301 ADEGIFRIFGFES 314
           ADEGIFRIFGFES
Sbjct: 301 ADEGIFRIFGFES 313

[Close]
BLAST of Carg23554 vs. TrEMBL
Match: tr|A0A0A0L651|A0A0A0L651_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061010 PE=4 SV=1)

HSP 1 Score: 650.2 bits (1676), Expect = 2.4e-183
Identity = 308/313 (98.40%), Postives = 311/313 (99.36%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEES  AFKNL+SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV
Sbjct: 1   MEESAQAFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS
Sbjct: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FNHTGEYIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 301 ADEGIFRIFGFES 314
           ADEGIFRIFGFES
Sbjct: 301 ADEGIFRIFGFES 313

[Close]
BLAST of Carg23554 vs. TrEMBL
Match: tr|A0A059BRQ3|A0A059BRQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01999 PE=4 SV=1)

HSP 1 Score: 627.1 bits (1616), Expect = 2.1e-176
Identity = 293/314 (93.31%), Postives = 309/314 (98.41%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEE+ P FKNL SREYQGHKKKVHSVAWNCTG KLASGSVDQTARVWHIEPHGHGKVKD+
Sbjct: 63  MEEAIP-FKNLPSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI 122

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDG
Sbjct: 123 ELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG 182

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           TH+AVGNRDDELTILDVRKFKP+HKRKFNYEVNEIAWNM+GEMFFLTTGNGTVEVLAYPS
Sbjct: 183 THVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMSGEMFFLTTGNGTVEVLAYPS 242

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRP++TLMAHTAGCYCIAIDPVG YFAVGSADSLVSLWDIS+MLCVRTFTKLEWPVRTIS
Sbjct: 243 LRPVDTLMAHTAGCYCIAIDPVGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 302

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FNHTG+Y+ASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQ
Sbjct: 303 FNHTGDYVASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQ 362

Query: 301 ADEGIFRIFGFESA 315
           ADEG+FRIFGFESA
Sbjct: 363 ADEGVFRIFGFESA 375

[Close]
BLAST of Carg23554 vs. TrEMBL
Match: tr|A0A2N9J7W6|A0A2N9J7W6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61204 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 4.0e-175
Identity = 289/311 (92.93%), Postives = 307/311 (98.71%), Query Frame = 0 

Query: 4   STPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELK 63
           S+  FKNL+SREYQGHKKKVHSVAWNCTG KLASGSVDQTAR+WHIEPHGHGKVKD+ELK
Sbjct: 5   SSIPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARLWHIEPHGHGKVKDIELK 64

Query: 64  GHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDGTHI 123
           GHTDSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKCSQQAELSGENINITYKPDGTHI
Sbjct: 65  GHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHI 124

Query: 124 AVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP 183
           AVGNRDDELTILDVRKFKP+HKRKF+YEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP
Sbjct: 125 AVGNRDDELTILDVRKFKPIHKRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPSLRP 184

Query: 184 IETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNH 243
           ++TLMAHTAGCYCIAIDP+G YFAVGSADSLVSLW+IS+MLCVRTFTKLEWPVRTISFNH
Sbjct: 185 LDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWEISEMLCVRTFTKLEWPVRTISFNH 244

Query: 244 TGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQADE 303
           TG+YIASASEDLFIDIS+VQ+GRTVHQIPCRAAMNSVEWNPK+NLLAYAGDDKNKYQADE
Sbjct: 245 TGDYIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADE 304

Query: 304 GIFRIFGFESA 315
           G+FRIFGFESA
Sbjct: 305 GVFRIFGFESA 315

[Close]
BLAST of Carg23554 vs. TrEMBL
Match: tr|A5ADM7|A5ADM7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0015g01220 PE=4 SV=1)

HSP 1 Score: 619.0 bits (1595), Expect = 5.8e-174
Identity = 289/314 (92.04%), Postives = 307/314 (97.77%), Query Frame = 0 

Query: 1   MEESTPAFKNLYSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDV 60
           MEE+ P FKNL+SREYQGHKKKVHSVAWNCTG KLASGSVDQTAR+W IE HGHGKVKD+
Sbjct: 1   MEETIP-FKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWLIEQHGHGKVKDI 60

Query: 61  ELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARNGKCSQQAELSGENINITYKPDG 120
           ELKGHTDSVDQLCWDPKH+DLIATASGDKTVRLWDAR+GKC+QQAELSGENINITYKPDG
Sbjct: 61  ELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCTQQAELSGENINITYKPDG 120

Query: 121 THIAVGNRDDELTILDVRKFKPVHKRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPS 180
           THIAVGNRDDELTILDVRKFKP+H+RKF+YEVNEIAWNMTGEMFFLTTGNGTVEVLAYP+
Sbjct: 121 THIAVGNRDDELTILDVRKFKPIHRRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAYPA 180

Query: 181 LRPIETLMAHTAGCYCIAIDPVGGYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTIS 240
           LRP++TLMAHTAGCYCIAIDP+G YFAVGSADSLVSLWDIS+MLCVRTFTKLEWPVRTIS
Sbjct: 181 LRPLDTLMAHTAGCYCIAIDPIGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTIS 240

Query: 241 FNHTGEYIASASEDLFIDISSVQSGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300
           FNHTGEYIASASEDLFIDIS+V +GRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ
Sbjct: 241 FNHTGEYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKHNLLAYAGDDKNKYQ 300

Query: 301 ADEGIFRIFGFESA 315
           ADEG+FRIFGFESA
Sbjct: 301 ADEGVFRIFGFESA 313

The following BLAST results are available for this feature:
BLAST of Carg23554 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022946738.12.0e-186100.00THO complex subunit 3 [Cucurbita moschata] >XP_023005479.1 THO complex subunit 3... [more]
XP_004149572.13.6e-18398.40PREDICTED: THO complex subunit 3 [Cucumis sativus] >XP_008449067.1 PREDICTED: TH... [more]
XP_022155009.19.1e-17995.22THO complex subunit 3 isoform X2 [Momordica charantia][more]
KCW68335.13.2e-17693.31hypothetical protein EUGRSUZ_F01999 [Eucalyptus grandis][more]
XP_010061402.13.2e-17693.31PREDICTED: THO complex subunit 3 [Eucalyptus grandis][more]
BLAST of Carg23554 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G56130.12.8e-16685.71Transducin/WD40 repeat-like superfamily protein[more]
AT4G32551.25.2e-1121.77LisH dimerisation motif;WD40/YVTN repeat-like-containing domain[more]
AT5G50230.16.8e-1125.69Transducin/WD40 repeat-like superfamily protein[more]
AT2G33340.15.8e-1025.37MOS4-associated complex 3B[more]
AT1G04510.11.3e-0923.44MOS4-associated complex 3A[more]
BLAST of Carg23554 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FKT5|THOC3_ARATH5.1e-16585.71THO complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=THO3 PE=1 SV=1[more]
sp|Q29RH4|THOC3_BOVIN3.7e-9150.83THO complex subunit 3 OS=Bos taurus OX=9913 GN=THOC3 PE=2 SV=1[more]
sp|Q8VE80|THOC3_MOUSE3.7e-9150.83THO complex subunit 3 OS=Mus musculus OX=10090 GN=Thoc3 PE=2 SV=1[more]
sp|Q96J01|THOC3_HUMAN4.9e-9150.83THO complex subunit 3 OS=Homo sapiens OX=9606 GN=THOC3 PE=1 SV=1[more]
sp|Q9USL1|YJKA_SCHPO1.5e-6035.25Uncharacterized WD repeat-containing protein C18B5.10c OS=Schizosaccharomyces po... [more]
BLAST of Carg23554 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BM38|A0A1S3BM38_CUCME2.4e-18398.40THO complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103491048 PE=4 SV=1[more]
tr|A0A0A0L651|A0A0A0L651_CUCSA2.4e-18398.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061010 PE=4 SV=1[more]
tr|A0A059BRQ3|A0A059BRQ3_EUCGR2.1e-17693.31Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01999 PE=4 SV... [more]
tr|A0A2N9J7W6|A0A2N9J7W6_FAGSY4.0e-17592.93Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61204 PE=4 SV=1[more]
tr|A5ADM7|A5ADM7_VITVI5.8e-17492.04Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0015g01220 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23554-RACarg23554-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 82..96
score: 43.08
coord: 206..220
score: 33.56
coord: 35..49
score: 38.84
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 222..261
e-value: 2.1
score: 15.0
coord: 9..48
e-value: 3.1E-7
score: 40.1
coord: 55..95
e-value: 2.6E-8
score: 43.6
coord: 264..302
e-value: 61.0
score: 5.7
coord: 139..177
e-value: 150.0
score: 3.3
coord: 180..219
e-value: 6.7E-8
score: 42.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 61..95
e-value: 2.5E-4
score: 21.7
coord: 14..47
e-value: 1.9E-5
score: 25.2
coord: 183..219
e-value: 0.023
score: 15.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 62..104
score: 15.555
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 187..228
score: 12.012
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 16..50
score: 13.215
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 7..177
e-value: 9.8E-36
score: 125.2
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 178..304
e-value: 3.1E-23
score: 84.1
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 233..283
e-value: 1.4E-4
score: 22.0
NoneNo IPR availablePANTHERPTHR22839THO COMPLEX SUBUNIT 3 THO3coord: 11..303
NoneNo IPR availableCDDcd00200WD40coord: 13..296
e-value: 1.56426E-41
score: 146.326
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 82..96
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 16..270
score: 28.739
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILYSSF50978WD40 repeat-likecoord: 11..296