Carg23546 (gene) Silver-seed gourd

Overview
NameCarg23546
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane emp24 domain-containing protein
LocationCucurbita_argyrosperma_scaffold_376 : 146847 .. 149017 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGATTGTGTTTATTTGTGGAGTTTAAGGAAAAAATGGAGATGGGAAGTGGGAAGTCAAAATACAGGTTTTTTATTTTCATGGCGGCTTTGTTCATATCATCACACCCAGTTTTGGGGATTAGATTTGTGATTGACAAAGAAGAATGCTTCTCTCACAACGTTGAATTCATTAGAGATACCATTTATCTCTCTTTTGTTGTCGTTAGCGTTCATACCTGGCGACATCATGCTCACAACGGCGTTGATCTTTTGGTGACCACTTTTATCAATTACTCTTTTTTCTTTTTCTCTCTTAGATTCGTCAAAATTGTTTGTATTAATTTGCATGTTTATGAGATGTCCGGCTCGTGAATTAGGATTAAGATATTGAATCTGATTGTATATACGTGTTGTTGTTATATACCTTACAGATGTTAAGGAACCGAGCCTTTTGTTTTGCACGTATGTATGGGTGAATGAGATTCAAATTAGGTTCTATGCATTAGGGTTTAAAAAACTAACATTGTTTGATATATGTTATTATAAGTTTTTTCAAAATGTTTGTATTCGATTTATAGATTAAGTTTTATAAAACTCCATTTTAGTAACATTTACAGATCATAGATCTGTTCATCACAGTGACACAAACCTAAATATAATACAAATCAAGCTTTTCCCAATCCGCAATTTTATAAATTCGAGCATCGTCTCAAGTCTCTCGATGTCGAAACTAAGTCATCAGTTCATGTTTTAGTCTTGTTATGATTAAATGTGATTTGCAAAGTACAGGTGAAAGGGCCTTTAGGGGAGAGAATTGAAGAAATTAGAGGGAAAACAAGTGAGAAATTTGAGTTTATTTCTCTTAGAAAAGGGCGATATCACTTCTGCTTCATCAACAACTCACCTCACCAAGAGACCATAGAATTTGATATCCATATCAATCATTACTATGAGTTCTATGATGATGATGAACAACATGTAAAAGATGGTATTAATTCCTTTGATGAACCCTAAAGTTTTTGCTTTGAAATTCATACTCCCCATTACTTTTCTGCTCATCTCATCTGGTTTGAAATGAAATTTACAGAACATTTGAGCCCTTTATTGGCTCAAATAAAGAAGTTGGGAGAAACCTTAGGCGTTATTGAGTTTGAGCAGCAATGGTTAGAGGCACAGACAGAGCGACAAGCCAAAGGTATTGTTCATCTATATTAACCCATTTGATATACAATCTATTCCTTTGTATTAATTCAAATATCAGATCTAAACAATAACACTTCTACCATTTAGTAAGTGAAGTACCTTTTTTGCAGTGAATGAAGCAATGAGCACAATGGCGATTCTGAAGGCTGTTCTCGAATCAGCAGCGCTCATCGGTGCAAGCAGTCTTCAAGTTTTCCTTCTACGTCGCCTGTTCGAGAAAAAAGTTGGAAGCCTGTATTCGAGCACCTACAGAATATAATCTCATATCCAAGGCAGATTCAAACTCCAGCAGACATACAACAAGCATGGCAGAACAAGTGTTGGAAAGGTTGAGGAGTTTTTTTTTGTTTCTCTGTTTTTAATGAAACTAAAAGAAGTCATCAAATTTGGTTTAGAGCTAAAACTATTCATCCTTATAAGATGATCGGCTTCCGAATGGTTGAATAATTACTTTCTCAACATCTAATACGCCATGATGAATCGGTGTAACGAGTATCCATGTTCGTATTATTCTTTCTTCTAATGTTTGCCAACATTTTCAACATAAATATTATGCTCCATGCTTAGAAAGCAAGAGAATATTATGCTCTCCATGAGGCATGGACTTTCTCTAAAGGGTTGTTTTCGAGTAATCGAAAATCTTCTACAGGGGAAAATGAAAATGGAAAGAGAGAAAGAAACCATTTAACAAACAATATTAGAGATTCAATATCAGATCTAAGCAGCAACATGCGTTCTTAAAAAAAACAACAAAAAAGAAGTAAAAACAAATTAGATAGCACAGGTCAGCTTCTACCAACACTTCACAGCACCACAAATAAAGCACGTAAAATTCTTCAACTTTTTTGCTCCATGAATGAAGACTAAGAAGCGAATAGTATAGCAGGCTGACCGCAATCGAAAACCAGTGGAGACGATCACAGAGCAACACCAGTGGAGACGATCACAGAGCAACACGGTTACGGGCTCTGAATGCAGCAGAACCAT

mRNA sequence

TTTGATTGTGTTTATTTGTGGAGTTTAAGGAAAAAATGGAGATGGGAAGTGGGAAGTCAAAATACAGGTTTTTTATTTTCATGGCGGCTTTGTTCATATCATCACACCCAGTTTTGGGGATTAGATTTGTGATTGACAAAGAAGAATGCTTCTCTCACAACGTTGAATTCATTAGAGATACCATTTATCTCTCTTTTGTTGTCGTTAGCGTTCATACCTGGCGACATCATGCTCACAACGGCGTTGATCTTTTGGTGAAAGGGCCTTTAGGGGAGAGAATTGAAGAAATTAGAGGGAAAACAAGTGAGAAATTTGAGTTTATTTCTCTTAGAAAAGGGCGATATCACTTCTGCTTCATCAACAACTCACCTCACCAAGAGACCATAGAATTTGATATCCATATCAATCATTACTATGAGTTCTATGATGATGATGAACAACATGTAAAAGATGAACATTTGAGCCCTTTATTGGCTCAAATAAAGAAGTTGGGAGAAACCTTAGGCGTTATTGAGTTTGAGCAGCAATGGTTAGAGGCACAGACAGAGCGACAAGCCAAAGTGAATGAAGCAATGAGCACAATGGCGATTCTGAAGGCTGTTCTCGAATCAGCAGCGCTCATCGGTGCAAGCAGTCTTCAAGTTTTCCTTCTACGTCGCCTGTTCGAGAAAAAAGTTGGAAGCCTGTATTCGAGCACCTACAGAATATAATCTCATATCCAAGGCAGATTCAAACTCCAGCAGACATACAACAAGCATGGCAGAACAAGTGTTGGAAAGGTTGAGGAGTTTTTTTTTGTTTCTCTGTTTTTAATGAAACTAAAAGAAGTCATCAAATTTGGTTTAGAGCTAAAACTATTCATCCTTATAAGATGATCGGCTTCCGAATGGTTGAATAATTACTTTCTCAACATCTAATACGCCATGATGAATCGGTGTAACGAGTATCCATGTTCGTATTATTCTTTCTTCTAATGTTTGCCAACATTTTCAACATAAATATTATGCTCCATGCTTAGAAAGCAAGAGAATATTATGCTCTCCATGAGGCATGGACTTTCTCTAAAGGGTTGTTTTCGAGTAATCGAAAATCTTCTACAGGGGAAAATGAAAATGGAAAGAGAGAAAGAAACCATTTAACAAACAATATTAGAGATTCAATATCAGATCTAAGCAGCAACATGCGTTCTTAAAAAAAACAACAAAAAAGAAGTAAAAACAAATTAGATAGCACAGGTCAGCTTCTACCAACACTTCACAGCACCACAAATAAAGCACGTAAAATTCTTCAACTTTTTTGCTCCATGAATGAAGACTAAGAAGCGAATAGTATAGCAGGCTGACCGCAATCGAAAACCAGTGGAGACGATCACAGAGCAACACGGTTACGGGCTCTGAATGCAGCAGAACCAT

Coding sequence (CDS)

ATGGAGATGGGAAGTGGGAAGTCAAAATACAGGTTTTTTATTTTCATGGCGGCTTTGTTCATATCATCACACCCAGTTTTGGGGATTAGATTTGTGATTGACAAAGAAGAATGCTTCTCTCACAACGTTGAATTCATTAGAGATACCATTTATCTCTCTTTTGTTGTCGTTAGCGTTCATACCTGGCGACATCATGCTCACAACGGCGTTGATCTTTTGGTGAAAGGGCCTTTAGGGGAGAGAATTGAAGAAATTAGAGGGAAAACAAGTGAGAAATTTGAGTTTATTTCTCTTAGAAAAGGGCGATATCACTTCTGCTTCATCAACAACTCACCTCACCAAGAGACCATAGAATTTGATATCCATATCAATCATTACTATGAGTTCTATGATGATGATGAACAACATGTAAAAGATGAACATTTGAGCCCTTTATTGGCTCAAATAAAGAAGTTGGGAGAAACCTTAGGCGTTATTGAGTTTGAGCAGCAATGGTTAGAGGCACAGACAGAGCGACAAGCCAAAGTGAATGAAGCAATGAGCACAATGGCGATTCTGAAGGCTGTTCTCGAATCAGCAGCGCTCATCGGTGCAAGCAGTCTTCAAGTTTTCCTTCTACGTCGCCTGTTCGAGAAAAAAGTTGGAAGCCTGTATTCGAGCACCTACAGAATATAA

Protein sequence

MEMGSGKSKYRFFIFMAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAALIGASSLQVFLLRRLFEKKVGSLYSSTYRI
Homology
[Close]
BLAST of Carg23546 vs. NCBI nr
Match: XP_022952151.1 (transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita moschata])

HSP 1 Score: 413.7 bits (1062), Expect = 4.0e-112
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0 

Query: 16  MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK 75
           MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK
Sbjct: 1   MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK 60

Query: 76  GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ 135
           GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ
Sbjct: 61  GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ 120

Query: 136 HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAAL 195
           HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAAL
Sbjct: 121 HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAAL 180

Query: 196 IGASSLQVFLLRRLFEKKVGSLYSSTYRI 225
           IGASSLQVFLLRRLFEKKVGSLYSSTYRI
Sbjct: 181 IGASSLQVFLLRRLFEKKVGSLYSSTYRI 209

[Close]
BLAST of Carg23546 vs. NCBI nr
Match: XP_023005965.1 (transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita maxima])

HSP 1 Score: 411.0 bits (1055), Expect = 2.6e-111
Identity = 208/209 (99.52%), Postives = 209/209 (100.00%), Query Frame = 0 

Query: 16  MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK 75
           MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSV+TWRHHAHNGVDLLVK
Sbjct: 1   MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVNTWRHHAHNGVDLLVK 60

Query: 76  GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ 135
           GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ
Sbjct: 61  GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ 120

Query: 136 HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAAL 195
           HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAAL
Sbjct: 121 HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAAL 180

Query: 196 IGASSLQVFLLRRLFEKKVGSLYSSTYRI 225
           IGASSLQVFLLRRLFEKKVGSLYSSTYRI
Sbjct: 181 IGASSLQVFLLRRLFEKKVGSLYSSTYRI 209

[Close]
BLAST of Carg23546 vs. NCBI nr
Match: XP_023539502.1 (transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.9 bits (847), Expect = 3.4e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 16  MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK 75
           MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK
Sbjct: 1   MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK 60

Query: 76  GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ 135
           GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ
Sbjct: 61  GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ 120

Query: 136 HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAK 176
           HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAK
Sbjct: 121 HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAK 160

[Close]
BLAST of Carg23546 vs. NCBI nr
Match: XP_022144018.1 (transmembrane emp24 domain-containing protein p24beta2-like [Momordica charantia])

HSP 1 Score: 285.0 bits (728), Expect = 2.2e-73
Identity = 151/224 (67.41%), Postives = 174/224 (77.68%), Query Frame = 0 

Query: 1   MEMGSGKSKYRFFIFMAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVH 60
           M +G  K   R  +    + +S+  V G RFVIDKEECFSHNVEF RDTI+LSFVVVSVH
Sbjct: 1   MRIGKSKGWLRIAMVGLLVSVSAEAVFGFRFVIDKEECFSHNVEFTRDTIHLSFVVVSVH 60

Query: 61  TWRHHAHNGVDLLVKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFD 120
               HAHNGVDL VKGP GE IEE +GKTSEKF+F++  KG Y FCF N SPH ETI+FD
Sbjct: 61  ASWRHAHNGVDLSVKGPKGEGIEEHKGKTSEKFKFVAHFKGPYRFCFTNKSPHHETIDFD 120

Query: 121 IHINHYYEFYDDDEQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAM 180
           IHI  Y+E YD D QHV++EHLSPL+ QI+KL E L ++EFEQQWLEAQTERQ KVNEAM
Sbjct: 121 IHITRYFEPYDHD-QHVQNEHLSPLMDQIEKLREALDIVEFEQQWLEAQTERQVKVNEAM 180

Query: 181 STMAILKAVLESAALIGASSLQVFLLRRLFEKKVGSLYSSTYRI 225
           S  AILKA+LESAALIGAS LQV LL RLFEK+VG L+S++Y I
Sbjct: 181 SRWAILKALLESAALIGASGLQVCLLCRLFEKRVGVLHSNSYTI 223

[Close]
BLAST of Carg23546 vs. NCBI nr
Match: POF22864.1 (transmembrane emp24 domain-containing protein p24beta2 [Quercus suber])

HSP 1 Score: 238.8 bits (608), Expect = 1.8e-59
Identity = 122/214 (57.01%), Postives = 159/214 (74.30%), Query Frame = 0 

Query: 2   EMGSGKSKYRFFIFMAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHT 61
           +M  G  K+   + + AL  S   V GIRFVID+EECFSHN+E+  DT+++SFVV+ V  
Sbjct: 110 KMKIGLQKFAVLVLL-ALLSSLQNVFGIRFVIDREECFSHNIEYEGDTLHISFVVIKVDG 169

Query: 62  WRHHAHNGVDLLVKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDI 121
             H+ H+GVDL+VKGP GE++++ R KTSEK EF++  KG +HFCF N SP+ ET++FD+
Sbjct: 170 AWHYTHDGVDLVVKGPSGEQLQDFRDKTSEKIEFVAHNKGIHHFCFTNKSPYHETVDFDV 229

Query: 122 HINHYYEFYDDDEQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMS 181
           H++H + +YD   QH KDEH +PLL QI KL E L  I+FEQ WLEAQTERQA VN+AM 
Sbjct: 230 HVSH-FSYYD---QHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTERQAIVNDAMG 289

Query: 182 TMAILKAVLESAALIGASSLQVFLLRRLFEKKVG 216
             A+ KA  ESAAL+GAS LQV+LLRRLFE+K+G
Sbjct: 290 RRAVHKAFFESAALVGASILQVYLLRRLFERKLG 318

[Close]
BLAST of Carg23546 vs. TAIR10
Match: AT3G07680.1 (emp24/gp25L/p24 family/GOLD family protein)

HSP 1 Score: 209.5 bits (532), Expect = 2.1e-54
Identity = 110/202 (54.46%), Postives = 142/202 (70.30%), Query Frame = 0 

Query: 14  IFMAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLL 73
           I +  L  S    LGIRFVID+EECFSH  E+  DT+++SFVV+   +  H   +GVDL+
Sbjct: 7   IVLLGLLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLV 66

Query: 74  VKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDD 133
           + GP GE+I + R + S K +F+  +KG Y FCF N SP+ ETI+FD+ + H + +YD  
Sbjct: 67  IHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGH-FAYYD-- 126

Query: 134 EQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESA 193
            QH KDEH +PL+ QI KL E L  I+FEQ WLEAQT+RQA VNE MS  A+ KA+ ES 
Sbjct: 127 -QHAKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESF 186

Query: 194 ALIGASSLQVFLLRRLFEKKVG 216
           ALIGAS LQV+LLRRLFE+K+G
Sbjct: 187 ALIGASFLQVYLLRRLFERKLG 204

[Close]
BLAST of Carg23546 vs. TAIR10
Match: AT3G22845.1 (emp24/gp25L/p24 family/GOLD family protein)

HSP 1 Score: 108.6 bits (270), Expect = 5.0e-24
Identity = 67/209 (32.06%), Postives = 107/209 (51.20%), Query Frame = 0 

Query: 7   KSKYRFFIFMAALFISS-HPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHH 66
           ++K   F+ +  + ++S + +  +   ++ EEC    V +  DT+  +FVVV    +   
Sbjct: 5   QAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGS 64

Query: 67  AHNGVDLLVKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINH 126
            H G+D  V  P G  ++ ++G + +KFEF + + G Y FCF N     ET+ F IH+ H
Sbjct: 65  DHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYIHVGH 124

Query: 127 YYEFYDDDEQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAI 186
                 ++    KDEHL P+  +I +L E L  +  EQ++L+A+  R    NE+     I
Sbjct: 125 ----IPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVI 184

Query: 187 LKAVLESAALIGASSLQVFLLRRLFEKKV 215
              V E   L  AS LQV  +R+LF K V
Sbjct: 185 FYTVGEYIFLAAASGLQVLYIRKLFSKSV 209

[Close]
BLAST of Carg23546 vs. Swiss-Prot
Match: sp|Q9S7M9|P24B2_ARATH (Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana OX=3702 GN=At3g07680 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.8e-53
Identity = 110/202 (54.46%), Postives = 142/202 (70.30%), Query Frame = 0 

Query: 14  IFMAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLL 73
           I +  L  S    LGIRFVID+EECFSH  E+  DT+++SFVV+   +  H   +GVDL+
Sbjct: 7   IVLLGLLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLV 66

Query: 74  VKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDD 133
           + GP GE+I + R + S K +F+  +KG Y FCF N SP+ ETI+FD+ + H + +YD  
Sbjct: 67  IHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGH-FAYYD-- 126

Query: 134 EQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESA 193
            QH KDEH +PL+ QI KL E L  I+FEQ WLEAQT+RQA VNE MS  A+ KA+ ES 
Sbjct: 127 -QHAKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESF 186

Query: 194 ALIGASSLQVFLLRRLFEKKVG 216
           ALIGAS LQV+LLRRLFE+K+G
Sbjct: 187 ALIGASFLQVYLLRRLFERKLG 204

[Close]
BLAST of Carg23546 vs. Swiss-Prot
Match: sp|Q9LIL4|P24B3_ARATH (Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana OX=3702 GN=At3g22845 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.0e-23
Identity = 67/209 (32.06%), Postives = 107/209 (51.20%), Query Frame = 0 

Query: 7   KSKYRFFIFMAALFISS-HPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHH 66
           ++K   F+ +  + ++S + +  +   ++ EEC    V +  DT+  +FVVV    +   
Sbjct: 5   QAKIHVFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGS 64

Query: 67  AHNGVDLLVKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINH 126
            H G+D  V  P G  ++ ++G + +KFEF + + G Y FCF N     ET+ F IH+ H
Sbjct: 65  DHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYIHVGH 124

Query: 127 YYEFYDDDEQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAI 186
                 ++    KDEHL P+  +I +L E L  +  EQ++L+A+  R    NE+     I
Sbjct: 125 ----IPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVI 184

Query: 187 LKAVLESAALIGASSLQVFLLRRLFEKKV 215
              V E   L  AS LQV  +R+LF K V
Sbjct: 185 FYTVGEYIFLAAASGLQVLYIRKLFSKSV 209

[Close]
BLAST of Carg23546 vs. TrEMBL
Match: tr|A0A2P4MZE2|A0A2P4MZE2_QUESU (Transmembrane emp24 domain-containing protein p24beta2 OS=Quercus suber OX=58331 GN=CFP56_34009 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 122/214 (57.01%), Postives = 159/214 (74.30%), Query Frame = 0 

Query: 2   EMGSGKSKYRFFIFMAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHT 61
           +M  G  K+   + + AL  S   V GIRFVID+EECFSHN+E+  DT+++SFVV+ V  
Sbjct: 110 KMKIGLQKFAVLVLL-ALLSSLQNVFGIRFVIDREECFSHNIEYEGDTLHISFVVIKVDG 169

Query: 62  WRHHAHNGVDLLVKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDI 121
             H+ H+GVDL+VKGP GE++++ R KTSEK EF++  KG +HFCF N SP+ ET++FD+
Sbjct: 170 AWHYTHDGVDLVVKGPSGEQLQDFRDKTSEKIEFVAHNKGIHHFCFTNKSPYHETVDFDV 229

Query: 122 HINHYYEFYDDDEQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMS 181
           H++H + +YD   QH KDEH +PLL QI KL E L  I+FEQ WLEAQTERQA VN+AM 
Sbjct: 230 HVSH-FSYYD---QHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTERQAIVNDAMG 289

Query: 182 TMAILKAVLESAALIGASSLQVFLLRRLFEKKVG 216
             A+ KA  ESAAL+GAS LQV+LLRRLFE+K+G
Sbjct: 290 RRAVHKAFFESAALVGASILQVYLLRRLFERKLG 318

[Close]
BLAST of Carg23546 vs. TrEMBL
Match: tr|M5WCT6|M5WCT6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G024700 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.0e-59
Identity = 120/202 (59.41%), Postives = 153/202 (75.74%), Query Frame = 0 

Query: 14  IFMAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLL 73
           + +    +S   V GIRFVID+EECFSHNV++  DT+++SFVV+ V    H+  +GVDL+
Sbjct: 11  VLLLTFLVSLQAVFGIRFVIDREECFSHNVQYEGDTVHISFVVIKVDASWHYTQDGVDLV 70

Query: 74  VKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDD 133
           VKGP GE+I + R KTSEKF+F++  KG + FCF N SP+ ETI+FDIH++H + +YD  
Sbjct: 71  VKGPSGEQIHDFRDKTSEKFDFVTRHKGVHQFCFTNKSPYHETIDFDIHVSH-FTYYD-- 130

Query: 134 EQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESA 193
            QH KDEH +PLL Q+ KL E L  I+FEQ WLEAQTERQA VNEAMS  AI KA  ESA
Sbjct: 131 -QHAKDEHFNPLLEQVSKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAIHKAFFESA 190

Query: 194 ALIGASSLQVFLLRRLFEKKVG 216
           AL+GAS+LQV+LLRRLFE+K+G
Sbjct: 191 ALVGASALQVYLLRRLFERKLG 208

[Close]
BLAST of Carg23546 vs. TrEMBL
Match: tr|A0A2P5F874|A0A2P5F874_9ROSA (TMP21-related OS=Trema orientalis OX=63057 GN=TorRG33x02_100390 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59
Identity = 118/200 (59.00%), Postives = 153/200 (76.50%), Query Frame = 0 

Query: 16  MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK 75
           + AL +S     GIRFVID+EECFSH+V++  DT+++SFVV+ + +  H++H GVDL+VK
Sbjct: 8   LVALLLSVEAAFGIRFVIDREECFSHDVKYEGDTVHVSFVVIKIDSSWHYSHEGVDLVVK 67

Query: 76  GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ 135
           GP G++I + R KTSEKFEF+  +KG + FCF N SP+ ETI+FD+H+NH+  F    ++
Sbjct: 68  GPSGDQIHDFRDKTSEKFEFVVHKKGVHRFCFTNKSPYHETIDFDVHVNHFSYF----DE 127

Query: 136 HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAAL 195
           H K+EHL+PLL QI KL E L  I+FEQ WLEAQTERQA VNEAMS  A+ KA  ES AL
Sbjct: 128 HAKEEHLNPLLEQISKLEEALYNIQFEQHWLEAQTERQALVNEAMSRRAVQKAFFESTAL 187

Query: 196 IGASSLQVFLLRRLFEKKVG 216
           +GAS LQVFLLRRLFE+K+G
Sbjct: 188 LGASLLQVFLLRRLFERKLG 203

[Close]
BLAST of Carg23546 vs. TrEMBL
Match: tr|A0A2P5B3U6|A0A2P5B3U6_PARAD (TMP21-related OS=Parasponia andersonii OX=3476 GN=PanWU01x14_273650 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 7.6e-59
Identity = 117/200 (58.50%), Postives = 152/200 (76.00%), Query Frame = 0 

Query: 16  MAALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRHHAHNGVDLLVK 75
           + AL +S     GIRFVID+EECFSH+V++  DT+++SFVV+ + +  H++H GVDL+VK
Sbjct: 8   LVALLLSVEAAFGIRFVIDREECFSHDVKYEGDTVHVSFVVIKIDSSWHYSHEGVDLVVK 67

Query: 76  GPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHINHYYEFYDDDEQ 135
           GP G++I + R KTSEKFEF+  +KG + FCF N SP+ ETI+FD+H+NH+  F    ++
Sbjct: 68  GPSGDQIHDFRDKTSEKFEFVVHKKGVHRFCFTNKSPYHETIDFDVHVNHFSYF----DE 127

Query: 136 HVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMAILKAVLESAAL 195
           H K+EHL+PLL QI KL E L  I+FEQ WLEAQTERQA VNE MS  A+ KA  ES AL
Sbjct: 128 HAKEEHLNPLLEQISKLEEALYNIQFEQHWLEAQTERQALVNEGMSRRAVQKAFFESTAL 187

Query: 196 IGASSLQVFLLRRLFEKKVG 216
           +GAS LQVFLLRRLFE+K+G
Sbjct: 188 LGASLLQVFLLRRLFERKLG 203

[Close]
BLAST of Carg23546 vs. TrEMBL
Match: tr|A0A1U8KY89|A0A1U8KY89_GOSHI (transmembrane emp24 domain-containing protein p24beta2-like OS=Gossypium hirsutum OX=3635 GN=LOC107922043 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 9.9e-59
Identity = 124/211 (58.77%), Postives = 159/211 (75.36%), Query Frame = 0 

Query: 9   KYRFFIFMA----ALFISSHPVLGIRFVIDKEECFSHNVEFIRDTIYLSFVVVSVHTWRH 68
           K  F +F+A    A   S + V GIRFVID+EECFSH+V++  DTI++SFVV+   +  H
Sbjct: 2   KIGFLVFVAVALLAFLCSPNAVYGIRFVIDREECFSHDVKYEGDTIHVSFVVIKADSTWH 61

Query: 69  HAHNGVDLLVKGPLGERIEEIRGKTSEKFEFISLRKGRYHFCFINNSPHQETIEFDIHIN 128
           ++H GVDL+VKGP G++I++ R K SEKFEF++ +KG +HFCF N SP+ ET++FD+H +
Sbjct: 62  NSHEGVDLVVKGPTGDQIQDFRDKISEKFEFVAHQKGIHHFCFSNKSPYYETVDFDVHES 121

Query: 129 HYYEFYDDDEQHVKDEHLSPLLAQIKKLGETLGVIEFEQQWLEAQTERQAKVNEAMSTMA 188
           H + +YD   QH KDEH +PLL QI KL E L  I+FEQ WLEAQTERQA VNEAMS  A
Sbjct: 122 H-FTYYD---QHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSKRA 181

Query: 189 ILKAVLESAALIGASSLQVFLLRRLFEKKVG 216
           + KA  ESAALIGAS LQV+LLRRLFE+K+G
Sbjct: 182 VHKAFYESAALIGASVLQVYLLRRLFERKLG 208

The following BLAST results are available for this feature:
BLAST of Carg23546 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952151.14.0e-112100.00transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita moschata][more]
XP_023005965.12.6e-11199.52transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita maxima][more]
XP_023539502.13.4e-87100.00transmembrane emp24 domain-containing protein p24beta2-like [Cucurbita pepo subs... [more]
XP_022144018.12.2e-7367.41transmembrane emp24 domain-containing protein p24beta2-like [Momordica charantia... [more]
POF22864.11.8e-5957.01transmembrane emp24 domain-containing protein p24beta2 [Quercus suber][more]
BLAST of Carg23546 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07680.12.1e-5454.46emp24/gp25L/p24 family/GOLD family protein[more]
AT3G22845.15.0e-2432.06emp24/gp25L/p24 family/GOLD family protein[more]
BLAST of Carg23546 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9S7M9|P24B2_ARATH3.8e-5354.46Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana O... [more]
sp|Q9LIL4|P24B3_ARATH9.0e-2332.06Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana O... [more]
BLAST of Carg23546 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P4MZE2|A0A2P4MZE2_QUESU1.2e-5957.01Transmembrane emp24 domain-containing protein p24beta2 OS=Quercus suber OX=58331... [more]
tr|M5WCT6|M5WCT6_PRUPE2.0e-5959.41Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G024700 PE=3 SV=1[more]
tr|A0A2P5F874|A0A2P5F874_9ROSA2.6e-5959.00TMP21-related OS=Trema orientalis OX=63057 GN=TorRG33x02_100390 PE=3 SV=1[more]
tr|A0A2P5B3U6|A0A2P5B3U6_PARAD7.6e-5958.50TMP21-related OS=Parasponia andersonii OX=3476 GN=PanWU01x14_273650 PE=3 SV=1[more]
tr|A0A1U8KY89|A0A1U8KY89_GOSHI9.9e-5958.77transmembrane emp24 domain-containing protein p24beta2-like OS=Gossypium hirsutu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015720TMP21-related
IPR009038GOLD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg23546-RACarg23546-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 28..211
e-value: 9.2E-31
score: 118.2
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 35..211
e-value: 6.4E-27
score: 94.6
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 36..123
score: 11.699
IPR015720TMP21-relatedPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 14..216
NoneNo IPR availablePANTHERPTHR22811:SF50TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN P24BETA2coord: 14..216