Carg23486 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAGGACACCGAGAGAGCGGGGATTCGGATATCTGTTGGCGGGTCTTCTTCTGGCGAGCTTAATCGCCAGAATCGATTCGCTTTCGGTCACAGTGAACGAGGTTGAATGCATCCATGAATACGTATTGTACGAAGGCGACACCGTTTCTGGGAATTTTGTCGTCGTCGATCATGAAATTTTCTGGGGCGCCGATCATCCCGGCATTGATTTCACTGTAAGCCACATTGGTTCCATCATTAATCTGGTTTTTAATTCATGTTTGCATGACAATGCGTTTCGTTTCTGCCGATTTGTAGATTGATCCCGATTACGATTGGATCTTGGATTAGGGGAATGTGTGGTAGAGTTCGGTTTTTTATTTCCAATTTTGCTGGACAATCTTCTTTTCTCTGTTGCGAAATTGGTTTAGGAAAGAAGGGTAAATGTTGTTCGTTGATCTTGACTTATTAAAGAACCTGGAATTTTTTGCCCTTTTGTTAATATGGACGTATGGGGCTTGTTTGTTTGTAATTGTGATGATACTTTAGATTGATAATTGTAGTACATTTCTTGTGAGCTTCGAAATGATCTGTTGTTGCACTGTTTATGATCATTAGTTTCACATTTATAATCCTTCGGGCATAGCCACCTGACACCCAAATGGTGTTGTGAAATTGTTATTTCTTTGGTCATCATCGACTGGATATTAGGGTACCTGGAATCTCTTGAAGGATTTTTGTATCCATAATGAAATGTTGTTTTGAAGATATCCTAACGTGGGGTTGGTTTTGTGCAGGTTACATCTCCCGCAGGTAATGTGGTGCACTCGTTGAAGGAGACATCTGGTGGCAAGTTTGAGTTCAAGGCTTCTCGCAGTGGAATGTACAAATTCTGTTTTCGTAATCCCTACTCGACCACCGAGACAGTTTCTTTCTACATCCATGTTGGTCACATTCCAAACGAACATGACCTTGCTAAAGATGGTATTTCACTTTTGTGCTTAGAGGACTTGGTTGCTTTTATGAAGTTGACACTTCTCTCATTTTTCACCTTGTTGTGGTAATTTCTTGCAGAACACCTAGACCCTGTAAATGTTAAAATTGCAGAGCTTAGAGAGGCATTGGAATCGGTCACCGCCGAGCAGAAATATTTGAAAGCACGTGATGCACGCCACCGTCACAGTATGTGGTTTATTTTTTGCATGGTTTATATATATATAAGAAGCATATAAGTTAATCATAAACGAAGAAATACAGCTTAGGTGCAGGGGGAAGAGAGAACCCCCTCCCAAAGGGAATTGGTCGTAGGTATGACACCGAACGCGATTTCTAACTTTGTGACACAAGATGAATGTCTTTTCTTCTCAAGTGGTCCGACATAACTATCATGATTATGATTTGATCTTGATGTCTATGTGTGGGATTGTAACACACGATAGCTTAAGCATCAATCTTTTAATAATGCATATAGGATCAAGCGTTGAAACCACGAGCTGAACAATAATTAGTAGCATAGACTTGAATATTATCCACCAGCATTATATCTCATGAAACTACGTAGAAATTAGATTCTTTTTTGTTTCCAGTTTAATATCGATGTAGACAAGAAGTTTATTCCATACTGATTTGGCAATTGTTATAGGATTCTTATTGTTTTTGCTACCTTTGGTTGTTGTGAATGCAGCTAATGAGAGTACAAGAAAGCGTGTAATTTTCTACACAGTGGGAGAGTATTTGTTGCTCGCTGTTGCAAGCGGGCTTCAGGTCGTTTACATTCGTCGCCTCTTCAGCAAGTCGGTTGCATATAACCGGGTCTGA ATGGAGAGGACACCGAGAGAGCGGGGATTCGGATATCTGTTGGCGGGTCTTCTTCTGGCGAGCTTAATCGCCAGAATCGATTCGCTTTCGGTCACAGTGAACGAGGTTGAATGCATCCATGAATACGTATTGTACGAAGGCGACACCGTTTCTGGGAATTTTGTCGTCGTCGATCATGAAATTTTCTGGGGCGCCGATCATCCCGGCATTGATTTCACTGTTACATCTCCCGCAGGTAATGTGGTGCACTCGTTGAAGGAGACATCTGGTGGCAAGTTTGAGTTCAAGGCTTCTCGCAGTGGAATGTACAAATTCTGTTTTCGTAATCCCTACTCGACCACCGAGACAGTTTCTTTCTACATCCATGTTGGTCACATTCCAAACGAACATGACCTTGCTAAAGATGAACACCTAGACCCTGTAAATGTTAAAATTGCAGAGCTTAGAGAGGCATTGGAATCGGTCACCGCCGAGCAGAAATATTTGAAAGCACGTGATGCACGCCACCGTCACACTAATGAGAGTACAAGAAAGCGTGTAATTTTCTACACAGTGGGAGAGTATTTGTTGCTCGCTGTTGCAAGCGGGCTTCAGGTCGTTTACATTCGTCGCCTCTTCAGCAAGTCGGTTGCATATAACCGGGTCTGA ATGGAGAGGACACCGAGAGAGCGGGGATTCGGATATCTGTTGGCGGGTCTTCTTCTGGCGAGCTTAATCGCCAGAATCGATTCGCTTTCGGTCACAGTGAACGAGGTTGAATGCATCCATGAATACGTATTGTACGAAGGCGACACCGTTTCTGGGAATTTTGTCGTCGTCGATCATGAAATTTTCTGGGGCGCCGATCATCCCGGCATTGATTTCACTGTTACATCTCCCGCAGGTAATGTGGTGCACTCGTTGAAGGAGACATCTGGTGGCAAGTTTGAGTTCAAGGCTTCTCGCAGTGGAATGTACAAATTCTGTTTTCGTAATCCCTACTCGACCACCGAGACAGTTTCTTTCTACATCCATGTTGGTCACATTCCAAACGAACATGACCTTGCTAAAGATGAACACCTAGACCCTGTAAATGTTAAAATTGCAGAGCTTAGAGAGGCATTGGAATCGGTCACCGCCGAGCAGAAATATTTGAAAGCACGTGATGCACGCCACCGTCACACTAATGAGAGTACAAGAAAGCGTGTAATTTTCTACACAGTGGGAGAGTATTTGTTGCTCGCTGTTGCAAGCGGGCTTCAGGTCGTTTACATTCGTCGCCTCTTCAGCAAGTCGGTTGCATATAACCGGGTCTGA MERTPRERGFGYLLAGLLLASLIARIDSLSVTVNEVECIHEYVLYEGDTVSGNFVVVDHEIFWGADHPGIDFTVTSPAGNVVHSLKETSGGKFEFKASRSGMYKFCFRNPYSTTETVSFYIHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVIFYTVGEYLLLAVASGLQVVYIRRLFSKSVAYNRV
BLAST of Carg23486 vs. NCBI nr
Match: XP_022955882.1 (transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita moschata]) HSP 1 Score: 426.0 bits (1094), Expect = 7.5e-116 Identity = 213/215 (99.07%), Postives = 214/215 (99.53%), Query Frame = 0
BLAST of Carg23486 vs. NCBI nr
Match: XP_023527186.1 (transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 424.5 bits (1090), Expect = 2.2e-115 Identity = 212/215 (98.60%), Postives = 215/215 (100.00%), Query Frame = 0
BLAST of Carg23486 vs. NCBI nr
Match: XP_022980825.1 (transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita maxima]) HSP 1 Score: 421.0 bits (1081), Expect = 2.4e-114 Identity = 210/215 (97.67%), Postives = 213/215 (99.07%), Query Frame = 0
BLAST of Carg23486 vs. NCBI nr
Match: XP_023538709.1 (transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 399.4 bits (1025), Expect = 7.5e-108 Identity = 199/215 (92.56%), Postives = 206/215 (95.81%), Query Frame = 0
BLAST of Carg23486 vs. NCBI nr
Match: XP_022939384.1 (transmembrane emp24 domain-containing protein p24beta3-like [Cucurbita moschata]) HSP 1 Score: 396.4 bits (1017), Expect = 6.4e-107 Identity = 197/215 (91.63%), Postives = 204/215 (94.88%), Query Frame = 0
BLAST of Carg23486 vs. TAIR10
Match: AT3G22845.1 (emp24/gp25L/p24 family/GOLD family protein) HSP 1 Score: 350.5 bits (898), Expect = 7.3e-97 Identity = 171/204 (83.82%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Carg23486 vs. TAIR10
Match: AT3G07680.1 (emp24/gp25L/p24 family/GOLD family protein) HSP 1 Score: 120.2 bits (300), Expect = 1.6e-27 Identity = 63/183 (34.43%), Postives = 97/183 (53.01%), Query Frame = 0
BLAST of Carg23486 vs. TAIR10
Match: AT1G57620.1 (emp24/gp25L/p24 family/GOLD family protein) HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14 Identity = 57/205 (27.80%), Postives = 103/205 (50.24%), Query Frame = 0
BLAST of Carg23486 vs. Swiss-Prot
Match: sp|Q9LIL4|P24B3_ARATH (Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana OX=3702 GN=At3g22845 PE=2 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 1.3e-95 Identity = 171/204 (83.82%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Carg23486 vs. Swiss-Prot
Match: sp|Q9S7M9|P24B2_ARATH (Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana OX=3702 GN=At3g07680 PE=1 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 2.9e-26 Identity = 63/183 (34.43%), Postives = 97/183 (53.01%), Query Frame = 0
BLAST of Carg23486 vs. Swiss-Prot
Match: sp|Q769F9|TMEDA_DICDI (Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum OX=44689 GN=empA PE=3 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 7.6e-19 Identity = 70/197 (35.53%), Postives = 105/197 (53.30%), Query Frame = 0
BLAST of Carg23486 vs. Swiss-Prot
Match: sp|Q15363|TMED2_HUMAN (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens OX=9606 GN=TMED2 PE=1 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16 Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = 0
BLAST of Carg23486 vs. Swiss-Prot
Match: sp|P49020|TMED2_CRIGR (Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus OX=10029 GN=TMED2 PE=1 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 3.5e-16 Identity = 61/194 (31.44%), Postives = 96/194 (49.48%), Query Frame = 0
BLAST of Carg23486 vs. TrEMBL
Match: tr|A0A1S3AWG7|A0A1S3AWG7_CUCME (transmembrane emp24 domain-containing protein p24beta3 OS=Cucumis melo OX=3656 GN=LOC103483671 PE=3 SV=1) HSP 1 Score: 391.0 bits (1003), Expect = 1.8e-105 Identity = 194/215 (90.23%), Postives = 204/215 (94.88%), Query Frame = 0
BLAST of Carg23486 vs. TrEMBL
Match: tr|A0A0A0L4N3|A0A0A0L4N3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145770 PE=3 SV=1) HSP 1 Score: 386.0 bits (990), Expect = 5.7e-104 Identity = 191/215 (88.84%), Postives = 202/215 (93.95%), Query Frame = 0
BLAST of Carg23486 vs. TrEMBL
Match: tr|A0A087HBR6|A0A087HBR6_ARAAL (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA3G261200 PE=3 SV=1) HSP 1 Score: 355.5 bits (911), Expect = 8.2e-95 Identity = 175/204 (85.78%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Carg23486 vs. TrEMBL
Match: tr|V4LAZ4|V4LAZ4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10021495mg PE=3 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 1.4e-94 Identity = 174/204 (85.29%), Postives = 187/204 (91.67%), Query Frame = 0
BLAST of Carg23486 vs. TrEMBL
Match: tr|D7T744|D7T744_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04150 PE=3 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 2.4e-94 Identity = 178/216 (82.41%), Postives = 193/216 (89.35%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |