Carg23477 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23477
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor like
Location	Cucurbita_argyrosperma_scaffold_196 : 347641 .. 348069 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTAAACCCCATCACCTTCTCAAACACAAACATGAACTTCTTAGAGAGAAAAAACGCCATAAAAGCAGCCTCTGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCATTGGAGTCGAGCCATCATTGCCAAATCTATACAAGCTCCACCTGAGGCCAAGCTTCGAAGGAAGACGACGCTACGTAAGATTGCTCGAAAAGTGGCTAGGAGTCGCACGCACCTGTCGAGGTCGAGGTCGAGGTCCGTAGCGAGATCAGTTGCTAAGAGATTGGTTCATAAAAGGACCAAACTTCTAAGGAGTTTGGTTCCTGGGGGAGAATTTATGAAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTGATTGCAAATGA

mRNA sequence

ATGGGTCTAAACCCCATCACCTTCTCAAACACAAACATGAACTTCTTAGAGAGAAAAAACGCCATAAAAGCAGCCTCTGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCATTGGAGTCGAGCCATCATTGCCAAATCTATACAAGCTCCACCTGAGGCCAAGCTTCGAAGGAAGACGACGCTACGTAAGATTGCTCGAAAAGTGGCTAGGAGTCGCACGCACCTGTCGAGGTCGAGGTCGAGGTCCGTAGCGAGATCAGTTGCTAAGAGATTGGTTCATAAAAGGACCAAACTTCTAAGGAGTTTGGTTCCTGGGGGAGAATTTATGAAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTGATTGCAAATGA

Coding sequence (CDS)

ATGGGTCTAAACCCCATCACCTTCTCAAACACAAACATGAACTTCTTAGAGAGAAAAAACGCCATAAAAGCAGCCTCTGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCATTGGAGTCGAGCCATCATTGCCAAATCTATACAAGCTCCACCTGAGGCCAAGCTTCGAAGGAAGACGACGCTACGTAAGATTGCTCGAAAAGTGGCTAGGAGTCGCACGCACCTGTCGAGGTCGAGGTCGAGGTCCGTAGCGAGATCAGTTGCTAAGAGATTGGTTCATAAAAGGACCAAACTTCTAAGGAGTTTGGTTCCTGGGGGAGAATTTATGAAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTGATTGCAAATGA

Protein sequence

MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTTLRKIARKVARSRTHLSRSRSRSVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK

Homology

[Close]

BLAST of Carg23477 vs. NCBI nr
Match: XP_022938061.1 (transcription factor IBH1-like 1 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 135/142 (95.07%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRK 60
           MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRK
Sbjct: 17  MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRK 76

Query: 61  TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSLVPGGEFMKDEALLIDE 120
           T     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  TKLLRSLVPGGEFMKDEALLIDE
Sbjct: 77  T--MLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKLLRSLVPGGEFMKDEALLIDE 136

Query: 121 ALDYISFLRVQVDGMRFLADCK 143
           ALDYISFLRVQVDGMRFLADCK
Sbjct: 137 ALDYISFLRVQVDGMRFLADCK 156

[Close]

BLAST of Carg23477 vs. NCBI nr
Match: XP_023537774.1 (transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 7.8e-45
Identity = 130/142 (91.55%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRK 60
           MGLNPITFSNTNMNFLERKNAIKAASDLAMA TRNGAT WSRAIIAKSIQAPPEAKLRRK
Sbjct: 17  MGLNPITFSNTNMNFLERKNAIKAASDLAMATTRNGATRWSRAIIAKSIQAPPEAKLRRK 76

Query: 61  TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSLVPGGEFMKDEALLIDE 120
           T       XXXXXXXXXXXXXXXXXXXXXXXXX  KRTKLLRSLVPGGEFMKDEALLIDE
Sbjct: 77  T--MLRKIXXXXXXXXXXXXXXXXXXXXXXXXXVHKRTKLLRSLVPGGEFMKDEALLIDE 136

Query: 121 ALDYISFLRVQVDGMRFLADCK 143
           ALDYISFLRVQVDGMRFLA+CK
Sbjct: 137 ALDYISFLRVQVDGMRFLANCK 156

[Close]

BLAST of Carg23477 vs. NCBI nr
Match: XP_022965992.1 (transcription factor IBH1-like 1 [Cucurbita maxima])

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 101/142 (71.13%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRK 60
           MGLNPITFSNT MNFLERK AIKA+SDLAMAATRNGAT WSRAIIAKSIQAP EAKLRRK
Sbjct: 17  MGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKSIQAPTEAKLRRK 76

Query: 61  TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSLVPGGEFMKDEALLIDE 120
           TT                                 KRTK+LRSLVPGGEFM+DEALLIDE
Sbjct: 77  TT--LHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVPGGEFMEDEALLIDE 136

Query: 121 ALDYISFLRVQVDGMRFLADCK 143
           ALDYISFLRVQVDGMRFLA+CK
Sbjct: 137 ALDYISFLRVQVDGMRFLANCK 156

[Close]

BLAST of Carg23477 vs. NCBI nr
Match: XP_008452339.1 (PREDICTED: uncharacterized protein LOC103493395 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 89/159 (55.97%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEAKLR 60
           +GL   T S TNMNFL+RK AIK ++D AMAATRNG T WS++IIAK ++  APPEA L 
Sbjct: 17  VGLQSTTSSTTNMNFLDRKKAIKISADYAMAATRNGTTIWSQSIIAKYLKGHAPPEAILN 76

Query: 61  RKTT--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSL 120
           R+T+                  XXXXXXXXXX                   KRTK+LRSL
Sbjct: 77  RRTSYINLLRKKRTMTQLRKMGXXXXXXXXXXSRLPLSKALPSTIAKRLVEKRTKVLRSL 136

Query: 121 VPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD-CK 143
           +PGGEFMKDEALLI+EALDYI FL+ QVDGMRFLA+ CK
Sbjct: 137 IPGGEFMKDEALLIEEALDYIPFLQAQVDGMRFLANYCK 175

[Close]

BLAST of Carg23477 vs. NCBI nr
Match: XP_022153351.1 (transcription factor IBH1-like 1 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 6.4e-23
Identity = 76/159 (47.80%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 3   LNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSI--QAPPEAKL--- 62
           L   T SNT M+  ERK AIK ++DLAMA+ RNG T WSRAIIAKS+  + P E  L   
Sbjct: 19  LKTYTASNTTMDVSERKKAIKMSADLAMASARNGTTIWSRAIIAKSMKDRVPAEIVLSHP 78

Query: 63  ----------RRKT----TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRS 122
                     R+KT    T                                 KR K+LRS
Sbjct: 79  VHGVKLSKLGRKKTTMVQTKGRRRVGRRATRRSNFFPPSKAFARLVAKRLVEKRRKVLRS 138

Query: 123 LVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK 143
           LVPGGEFM+DE LLI+E LDYISFLR QVDGMRFLA CK
Sbjct: 139 LVPGGEFMEDEVLLIEETLDYISFLRAQVDGMRFLASCK 177

[Close]

BLAST of Carg23477 vs. TAIR10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures)

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-17
Identity = 53/127 (41.73%), Postives = 67/127 (52.76%), Query Frame = 0


Query: 13  MNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTTXXXXXXXXXX 72
           +N  ERKNAI+ +SDLAMAA RNG+T WSRA+I++S        + R+            
Sbjct: 31  LNVTERKNAIRLSSDLAMAAARNGSTVWSRALISRSGNKTANKPMARR------ILKKAR 90

Query: 73  XXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQV 132
                                  KRT LL+SLVPGGE + D+  LI E LDYI +LR QV
Sbjct: 91  NRMKNRCNILRRNGNFTAKTWVRKRTDLLKSLVPGGELIDDKDYLIRETLDYIVYLRAQV 150

Query: 133 DGMRFLA 140
           D MR +A
Sbjct: 151 DVMRTVA 151

[Close]

BLAST of Carg23477 vs. TAIR10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors)

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-13
Identity = 71/156 (45.51%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS------------ 60
           MGL     S  N +  ERK AIK ++D+AMA+ R G T WSRA+I K+            
Sbjct: 17  MGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRALIEKTATEDNFLVRQML 76

Query: 61  --IQAPP--EAKLRRKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSL 120
             I+A      KL +KT          XXXXXXXXXXXXXXXXXX      +RT+ LR++
Sbjct: 77  SGIKAETLINKKLPKKTVCHRKIVRRSXXXXXXXXXXXXXXXXXXAKRLVKRRTQGLRNV 136

Query: 121 VPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD 141
           VPGGE M ++ LL+ E LDYI  L+ QV+ MR + D
Sbjct: 137 VPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVD 172

[Close]

BLAST of Carg23477 vs. TAIR10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.8e-04
Identity = 36/119 (30.25%), Postives = 51/119 (42.86%), Query Frame = 0


Query: 22  IKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTTXXXXXXXXXXXXXXXXXXX 81
           I+  +D  +AA+  G T WSRAI+A  ++A  + K  RK                     
Sbjct: 87  IRDTADRVLAASARGTTRWSRAILASRVRA--KLKKHRKA---------KKSTGNCKSRK 146

Query: 82  XXXXXXXXXXXXXXKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD 141
                         ++ K+L  LVPG   +    LL DEA DYI+ L +QV  M  LA+
Sbjct: 147 GLTETNRIKLPAVERKLKILGRLVPGCRKVSVPNLL-DEATDYIAALEMQVRAMEALAE 193

[Close]

BLAST of Carg23477 vs. Swiss-Prot
Match: sp|Q9M0B9|IBL1_ARATH (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 71/156 (45.51%), Postives = 90/156 (57.69%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS------------ 60
           MGL     S  N +  ERK AIK ++D+AMA+ R G T WSRA+I K+            
Sbjct: 17  MGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRALIEKTATEDNFLVRQML 76

Query: 61  --IQAPP--EAKLRRKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSL 120
             I+A      KL +KT          XXXXXXXXXXXXXXXXXX      +RT+ LR++
Sbjct: 77  SGIKAETLINKKLPKKTVCHRKIVRRSXXXXXXXXXXXXXXXXXXAKRLVKRRTQGLRNV 136

Query: 121 VPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD 141
           VPGGE M ++ LL+ E LDYI  L+ QV+ MR + D
Sbjct: 137 VPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVD 172

[Close]

BLAST of Carg23477 vs. TrEMBL
Match: tr|A0A1S3BT01|A0A1S3BT01_CUCME (uncharacterized protein LOC103493395 OS=Cucumis melo OX=3656 GN=LOC103493395 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.3e-27
Identity = 89/159 (55.97%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEAKLR 60
           +GL   T S TNMNFL+RK AIK ++D AMAATRNG T WS++IIAK ++  APPEA L 
Sbjct: 17  VGLQSTTSSTTNMNFLDRKKAIKISADYAMAATRNGTTIWSQSIIAKYLKGHAPPEAILN 76

Query: 61  RKTT--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSL 120
           R+T+                  XXXXXXXXXX                   KRTK+LRSL
Sbjct: 77  RRTSYINLLRKKRTMTQLRKMGXXXXXXXXXXSRLPLSKALPSTIAKRLVEKRTKVLRSL 136

Query: 121 VPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD-CK 143
           +PGGEFMKDEALLI+EALDYI FL+ QVDGMRFLA+ CK
Sbjct: 137 IPGGEFMKDEALLIEEALDYIPFLQAQVDGMRFLANYCK 175

[Close]

BLAST of Carg23477 vs. TrEMBL
Match: tr|A0A0A0LM92|A0A0A0LM92_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047790 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.5e-23
Identity = 83/161 (51.55%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 1   MGLNPITFSN-TNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEAKL 60
           +GL   T S+ TNMNFL+RK AIK ++D AMA TR G T WS++IIAKS++  APP+A L
Sbjct: 17  VGLRSTTSSSTTNMNFLDRKKAIKISADYAMAETRKGTTIWSQSIIAKSLKGHAPPKAIL 76

Query: 61  RRKT--------------TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRS 120
            R T                     XXXXXXXX                   KRTK+LRS
Sbjct: 77  NRGTIYINLLRKKRTMTQLQKMGRKXXXXXXXXSRLPSSKVLPRTIAKRLVEKRTKVLRS 136

Query: 121 LVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD--CK 143
           L+PGGEFM+DE LLI+EALDYI FL+ QVDGMRFLA+  CK
Sbjct: 137 LIPGGEFMEDEVLLIEEALDYIPFLQAQVDGMRFLANYYCK 177

[Close]

BLAST of Carg23477 vs. TrEMBL
Match: tr|A0A2C9ULV2|A0A2C9ULV2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G147700 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 62/152 (40.79%), Postives = 79/152 (51.97%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS------------ 60
           +GL     +N NM+ LERK AIK ++D+AMA+TRNG T WSRA++AK+            
Sbjct: 17  VGLQLCESTNQNMSILERKKAIKLSADIAMASTRNGMTCWSRALVAKTSTDFGNKVLVDN 76

Query: 61  -IQAPPEAKLRRKTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSLVPG 120
            + A    KL+ K T                                 KRT++L+SLVPG
Sbjct: 77  ILLASQSEKLKNKRTIIRRKKILRKSHRARKARGGRVVARSLAKEMVKKRTQVLKSLVPG 136

Query: 121 GEFMKDEALLIDEALDYISFLRVQVDGMRFLA 140
           GEFM D+  LI+E LDYI  LR QVD MR LA
Sbjct: 137 GEFM-DDVSLIEETLDYIVSLRAQVDVMRTLA 167

[Close]

BLAST of Carg23477 vs. TrEMBL
Match: tr|A0A1U8JQD3|A0A1U8JQD3_GOSHI (transcription factor bHLH147-like OS=Gossypium hirsutum OX=3635 GN=LOC107908205 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.3e-15
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRK 60
           MGL    FSN NM+  ERK AIK ++D AMA+ R G T WSRA+I+   ++      RR 
Sbjct: 18  MGLQRCKFSNKNMSIFERKKAIKLSADTAMASARKGLTCWSRALISTPDRSAVPTTTRRA 77

Query: 61  T---TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSLVPGGEFMKDEALL 120
           +                                     KRT++L+SL+PGGEFM +E  L
Sbjct: 78  SLACKKIVKRSRRIRRTAKCGAARKRQITRSIAQCLVWKRTQILKSLIPGGEFM-NEVCL 137

Query: 121 IDEALDYISFLRVQVDGMRFLA 140
           I+E LDYI+ LRVQVD MR LA
Sbjct: 138 IEETLDYITSLRVQVDVMRSLA 158

[Close]

BLAST of Carg23477 vs. TrEMBL
Match: tr|A0A2P5XKL8|A0A2P5XKL8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16741 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.3e-15
Identity = 58/142 (40.85%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRK 60
           MGL    FSN NM+  ERK AIK ++D AMA+ R G T WSRA+I+   ++      RR 
Sbjct: 125 MGLQRCKFSNKNMSIFERKKAIKLSADTAMASARKGLTCWSRALISTPDRSAVPTTTRRA 184

Query: 61  T---TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRTKLLRSLVPGGEFMKDEALL 120
           +                                     KRT++L+SL+PGGEFM +E  L
Sbjct: 185 SLACKKIVKRSRRIRRTAKCGAARKRQITRSIAQCLVWKRTQILKSLIPGGEFM-NEVCL 244

Query: 121 IDEALDYISFLRVQVDGMRFLA 140
           I+E LDYI+ LRVQVD MR LA
Sbjct: 245 IEETLDYITSLRVQVDVMRSLA 265

The following BLAST results are available for this feature:

BLAST of Carg23477 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938061.1	2.1e-45	95.07	transcription factor IBH1-like 1 [Cucurbita moschata]	[more]
XP_023537774.1	7.8e-45	91.55	transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022965992.1	1.2e-42	71.13	transcription factor IBH1-like 1 [Cucurbita maxima]	[more]
XP_008452339.1	1.3e-26	55.97	PREDICTED: uncharacterized protein LOC103493395 [Cucumis melo]	[more]
XP_022153351.1	6.4e-23	47.80	transcription factor IBH1-like 1 [Momordica charantia]	[more]

BLAST of Carg23477 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57780.1	4.9e-17	41.73	EXPRESSED IN: 18 plant structures	[more]
AT4G30410.2	3.3e-13	45.51	sequence-specific DNA binding transcription factors	[more]
AT1G09250.1	2.8e-04	30.25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Carg23477 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M0B9\|IBL1_ARATH	5.9e-12	45.51	Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV...	[more]

BLAST of Carg23477 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BT01\|A0A1S3BT01_CUCME	8.3e-27	55.97	uncharacterized protein LOC103493395 OS=Cucumis melo OX=3656 GN=LOC103493395 PE=...	[more]
tr\|A0A0A0LM92\|A0A0A0LM92_CUCSA	9.5e-23	51.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047790 PE=4 SV=1	[more]
tr\|A0A2C9ULV2\|A0A2C9ULV2_MANES	1.3e-16	40.79	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G147700 PE=4 SV=...	[more]
tr\|A0A1U8JQD3\|A0A1U8JQD3_GOSHI	7.3e-15	40.85	transcription factor bHLH147-like OS=Gossypium hirsutum OX=3635 GN=LOC107908205 ...	[more]
tr\|A0A2P5XKL8\|A0A2P5XKL8_GOSBA	7.3e-15	40.85	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA16741 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23477-RA	Carg23477-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF5	SUBFAMILY NOT NAMED	coord: 13..140
None	No IPR available	PANTHER	PTHR33124	FAMILY NOT NAMED	coord: 13..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23477	MELO3C004096	Melon (DHL92) v3.5.1	carmeB0488
Carg23477	Cucsa.089810	Cucumber (Gy14) v1	carcgyB0553
Carg23477	CmaCh12G009950	Cucurbita maxima (Rimu)	carcmaB0670
Carg23477	CmoCh12G010050	Cucurbita moschata (Rifu)	carcmoB0652
Carg23477	Cp4.1LG07g08300	Cucurbita pepo (Zucchini)	carcpeB0676
Carg23477	CsGy2G005670	Cucumber (Gy14) v2	carcgybB0491
Carg23477	MELO3C004096.2	Melon (DHL92) v3.6.1	carmedB0494
Carg23477	CsaV3_2G007890	Cucumber (Chinese Long) v3	carcucB0520
Carg23477	Cla97C11G218460	Watermelon (97103) v2	carwmbB0506
Carg23477	Bhi06G001184	Wax gourd	carwgoB0586

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None