Carg23461 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23461
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	chromatin-remodeling complex subunit ies6
Location	Cucurbita_argyrosperma_scaffold_196 : 90664 .. 93555 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTATTTTGAGAGTATTATAGCTTTAGTTTACTGGATGTCGTGCTATGTGGGTTAGTACCGTCACCTCAACACGTTTTCTGCGAGGTGTTCCATCACTTTTTTTATTTGTAGGCGTCTTTGCAATTCCTCATCCATTTCTTGCATTTTCTTCTCCATGGTCTCCATTCTTTTCTCCCATTTTCTTTGAGCCATTTTGATCTCCTACTCGGTTCGAAATGTGTGTGCACACCAAATTTTTAGGAACTAACTATGCGTCTGTGCGTCCAAGGGTGCAATAGAGCACCATACTTGAATAATCCTTCCAAATTCAGGAAGGCTAGCTACTCTCATACCTAAACATTTTGTAAAACCATAAACTGTCTTGCTTCATGCTCATGACATTTATGGCTACATATACATACATGTACTGTGTTAATGGCTACATATACATATACATACCTCGAGGGAGGCAGCTTGCTGTTGATCAATAGGATTCCAGTCAAGATCATGGGAAAATTCGCAGAGGGCATCGTCCTTTGTGTATAAGGACGTGTAAAAGGACACAAAGTCTGATACAATTTCTTCGTTTACTAAACAACTTCTGCCTTGTGTGGATAAAATTTCCATGACGGTACTCTTTCATTTCGATTGTAGCCATGATACGATGGCAAAAATTTGGAGTTTATGTCACCTTCCTCTGACCATCGTTTTTTACATTTTTGTCTCCAAGATTGCTCTTCCTTTTCTGCCAACGAAATAAGGTCTGCTTTCATTAGCTTTTTTCCGTGGGTTGAACTAGTGTGATGGAGCTAGTTTCCTCTCTTTGATCAAGGAGGCACCAACCCAGTGGGAGACAGCAATAAATGTTCTGTGTTTGGGTCTCTTCACGAGTATTGATGTTTTCATTGGCAATAACACATTAAAAAACTAAGTAGTCTTGGAATTTTATACTTTTATACCCCTTATTGAAAGTTTTGAATTTGATACTTCTTGAGTATTAATTGTTCCTTTCATTCGTTTTTCAGATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGTATGTGACTTTTGTTTGTTTATGACTCAACATTGCTTTCTAAACTCGAACAACAATTAATTTCTTTGTTTTCTTAAAAAAAAAAAAAAGAACCCTTTTTGAAATCACTTCAGGAAGTGACGTTGTTATTATTCAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTAATTTCTGAAGTTTCTTTTTATAAGATCACTTCATCTTTGATCATTACCATTGACACCGTCTTTGAACATGAAATTTAGATGATGCCACATGCCCTGGTAGCTAGTTGAACACATTAAATTTCATTCAGTTTTGAGTAATCTTTTCCTAAATTACTTGAAAGTTGCCGTTTGTGTTATATATAAGGGATTCCTAGATTTAAGCTGAAAAAACAATCACTTATTGACTGCCATCTTCTTTCATCTATGCGGATCCCAAAGAGGCAGGTTCCATTTTTTTCATCAGGTCTAGCTAAAGATTTGAGGTATTAAGAATTCAATGGTGAAGTCATGAGGTAGACACTATATGTGAGATCCCACGTTGGTTGGGGATGAAAATGAAACATTCTTTATAAAGGTGTGGAAACCTCTCCCTATCAGACACGTTTTAAAAAACTTTGAAGGGAAGCTCGAAAGGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGGCTTGTGCCGTTACAAATAGTATTAGAGATAGACATCAGACAATGTGTCAGCGAGGAGGCTGAGCTCCGAAGGCGGGTGGACACGAGGCGGTGTGCTAGCAAGGACGCTGGGTCCCAAAGGGGGTGGATTGTGGGGTCCCACATCGATTGGAAAAGGGAACGAGTGCCAGCGAGGACGCTGAGCCCCGAAGGGAGGTGAATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAATCTCTCCCTAGCAAATGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGAAAGCCTAGAGAAGACAATATTTGCTAGCGGTGGACTCGGACCATTACACTATTCAACTAGTGCAAGTTATTTGGAAAAATAACTCTAAGGAATCGATATGAATATTGGTCTCAAAACCCCACGCAGTTCTATAGTTGATGTGTTTGATATTCAACCAATAATCTAAGCTAAGCTGTTTCTTTAGTTTGTTTCATAAGTAGAAATCATATCACGTCGAGCCCTAAAAAGCATCAAATTATTTAGTGCTATGAATGGTTCTGAAATACTGAGTTTTCATTAGAATAACTTCCTGCTTAACTGCTTCTTGGAGTTTTATCTCACAAGTTCTATATTTGGCTGAGTTCTTCAATCTGATGCATCTAACTCTTACAGGTGAAGAGATACTACTTTTCTATTGCCGATTAGCTCGGCGTCGAACGAGACCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAAATGCATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATGCATTTTATGTTTGCCTTTGGAACTATTAGCCAAAGTTGATTCATTTGGTTAAAACTCTCCAAGCTGAAAACATCCCCTAATGGGATTGCAGTTGAAGAAAATTTAAGGCCTAAAACTCGGTTCTATACCTCGAATCTTGAATGATTTCTATGACTTCTATGTACCGTCCGTATCAGTAACTAAATAATGATATGTCACGTTTATTGTACAAATATTGTTTGATCATTCACG

mRNA sequence

ATGGGTTATTTTGAGAGTATTATAGCTTTAGTTTACTGGATGTCGTGCTATGTGGATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTGAAGAGATACTACTTTTCTATTGCCGATTAGCTCGGCGTCGAACGAGACCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAAATGCATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATGCATTTTATGTTTGCCTTTGGAACTATTAGCCAAAGTTGATTCATTTGGTTAAAACTCTCCAAGCTGAAAACATCCCCTAATGGGATTGCAGTTGAAGAAAATTTAAGGCCTAAAACTCGGTTCTATACCTCGAATCTTGAATGATTTCTATGACTTCTATGTACCGTCCGTATCAGTAACTAAATAATGATATGTCACGTTTATTGTACAAATATTGTTTGATCATTCACG

Coding sequence (CDS)

ATGGGTTATTTTGAGAGTATTATAGCTTTAGTTTACTGGATGTCGTGCTATGTGGATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGGTGA

Protein sequence

MGYFESIIALVYWMSCYVDVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Homology

[Close]

BLAST of Carg23461 vs. NCBI nr
Match: XP_023537972.1 (chromatin-remodeling complex subunit ies6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 19 DVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRN 78
          DVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRN
Sbjct: 3  DVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRN 62

Query: 79 AAVVLR 85
          AAVVLR
Sbjct: 63 AAVVLR 68

[Close]

BLAST of Carg23461 vs. NCBI nr
Match: XP_022937916.1 (INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937918.1 INO80 complex subunit C isoform X2 [Cucurbita moschata] >XP_022966011.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966012.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966013.1 INO80 complex subunit C isoform X2 [Cucurbita maxima] >XP_023536867.1 INO80 complex subunit C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 7.2e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA
Sbjct: 60  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 119

Query: 80  AVVLR 85
           AVVLR
Sbjct: 120 AVVLR 124

[Close]

BLAST of Carg23461 vs. NCBI nr
Match: XP_022144563.1 (INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144565.1 INO80 complex subunit C isoform X2 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FKVIRSLPNEYVQRYLAMRNA
Sbjct: 60  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNA 119

Query: 80  AVVLR 85
           AV+LR
Sbjct: 120 AVILR 124

[Close]

BLAST of Carg23461 vs. NCBI nr
Match: XP_004152811.1 (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus] >XP_011649021.1 PREDICTED: INO80 complex subunit C isoform X2 [Cucumis sativus] >KGN61299.1 hypothetical protein Csa_2G077540 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA
Sbjct: 60  VNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 119

Query: 80  AVVLR 85
           AVVLR
Sbjct: 120 AVVLR 124

[Close]

BLAST of Carg23461 vs. NCBI nr
Match: XP_008441777.1 (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PREDICTED: INO80 complex subunit C isoform X2 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA
Sbjct: 60  VNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 119

Query: 80  AVVLR 85
           AVVLR
Sbjct: 120 AVVLR 124

[Close]

BLAST of Carg23461 vs. TAIR10
Match: AT4G38495.1 (YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 103.6 bits (257), Expect = 6.1e-23
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPS  PCK++CDITGYEAPY DPRT LRYANA +F+ +RSL ++ V +YL++RNA
Sbjct: 60  VNIESPPSTQPCKRLCDITGYEAPYVDPRTNLRYANAHVFQTVRSLSSDQVHQYLSIRNA 119

Query: 80  AVVLR 85
           AVVL+
Sbjct: 120 AVVLK 124

[Close]

BLAST of Carg23461 vs. TAIR10
Match: AT2G36740.1 (sequence-specific DNA binding transcription factors;DNA binding;DNA binding)

HSP 1 Score: 41.6 bits (96), Expect = 2.8e-04
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0


Query: 29  HPCKKICDITGYEAPYYDPRTTLRYANADIFKVIR 64
           +P K +C ITG  A Y DP+T L YA  D FK IR
Sbjct: 265 YPEKAVCVITGLPAKYRDPKTGLPYATRDAFKAIR 299

[Close]

BLAST of Carg23461 vs. Swiss-Prot
Match: sp|Q9UTE8|IES6_SCHPO (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ies6 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-11
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 21  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 80
           +IE+PPS+ P  K CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ 
Sbjct: 54  SIEAPPSVLPQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIRELPSGADQEYLKLRSSD 113

Query: 81  VVLR 85
           VVL+
Sbjct: 114 VVLK 117

[Close]

BLAST of Carg23461 vs. Swiss-Prot
Match: sp|Q8BHA0|IN80C_MOUSE (INO80 complex subunit C OS=Mus musculus OX=10090 GN=Ino80c PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-08
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 21  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 80
           +I++PPS  P KK  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A 
Sbjct: 128 SIDAPPSFKPAKKYSDISGLLANYTDPQSKLRFSTVEEFSYIRRLPSDVVTGYLALRKAT 187

Query: 81  VVL 84
            ++
Sbjct: 188 SIV 190

[Close]

BLAST of Carg23461 vs. Swiss-Prot
Match: sp|Q6PI98|IN80C_HUMAN (INO80 complex subunit C OS=Homo sapiens OX=9606 GN=INO80C PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 21  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 80
           +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A 
Sbjct: 129 SIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKAT 188

Query: 81  VVL 84
            ++
Sbjct: 189 SIV 191

[Close]

BLAST of Carg23461 vs. Swiss-Prot
Match: sp|Q5BJY3|IN80C_RAT (INO80 complex subunit C OS=Rattus norvegicus OX=10116 GN=Ino80c PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-08
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 21  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 80
           +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A 
Sbjct: 128 SIDAPPSFKPAKKYSDVSGLLANYTDPQSKLRFSTVEEFSYIRRLPSDVVTGYLTLRKAT 187

Query: 81  VVL 84
            ++
Sbjct: 188 SIV 190

[Close]

BLAST of Carg23461 vs. Swiss-Prot
Match: sp|P32617|IES6_YEAST (Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IES6 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.0e-08
Identity = 25/65 (38.46%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 21  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNA 80
           ++E+PPS+ P KK CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A
Sbjct: 102 SVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQEYLKLRGA 161

Query: 81  AVVLR 85
             VL+
Sbjct: 162 NFVLK 166

[Close]

BLAST of Carg23461 vs. TrEMBL
Match: tr|A0A1S3B479|A0A1S3B479_CUCME (INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA
Sbjct: 60  VNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 119

Query: 80  AVVLR 85
           AVVLR
Sbjct: 120 AVVLR 124

[Close]

BLAST of Carg23461 vs. TrEMBL
Match: tr|A0A0A0LJN6|A0A0A0LJN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA
Sbjct: 60  VNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 119

Query: 80  AVVLR 85
           AVVLR
Sbjct: 120 AVVLR 124

[Close]

BLAST of Carg23461 vs. TrEMBL
Match: tr|A0A2P4M2Z3|A0A2P4M2Z3_QUESU (Protein exordium-like 7 OS=Quercus suber OX=58331 GN=CFP56_75334 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 14  MSCYVDVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRY 73
           +SC  DVNIESPPSMHPCK+ICDITGYEAPYYDPRT LRYANAD+FK++RSLP EYVQ Y
Sbjct: 202 VSCSADVNIESPPSMHPCKRICDITGYEAPYYDPRTNLRYANADVFKLVRSLPKEYVQSY 261

Query: 74  LAMRNAAVVLR 85
           LA+RNAAVVL+
Sbjct: 262 LALRNAAVVLK 272

[Close]

BLAST of Carg23461 vs. TrEMBL
Match: tr|A0A2P4J0I1|A0A2P4J0I1_QUESU (Ino80 complex subunit c OS=Quercus suber OX=58331 GN=CFP56_51994 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.4e-28
Identity = 59/65 (90.77%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPSMHPCKKICDITGYEAPYYDPRT LRYANAD+FK++RSLPNEYVQRYLA+RNA
Sbjct: 131 VNIESPPSMHPCKKICDITGYEAPYYDPRTNLRYANADVFKLVRSLPNEYVQRYLALRNA 190

Query: 80  AVVLR 85
           AVVL+
Sbjct: 191 AVVLK 195

[Close]

BLAST of Carg23461 vs. TrEMBL
Match: tr|I3SJK2|I3SJK2_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27
Identity = 57/65 (87.69%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 20  VNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNA 79
           VNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYAN D+FK+IR+LPN+YVQRYLA+RNA
Sbjct: 60  VNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANTDVFKIIRALPNDYVQRYLALRNA 119

Query: 80  AVVLR 85
           AVVL+
Sbjct: 120 AVVLK 124

The following BLAST results are available for this feature:

BLAST of Carg23461 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537972.1	1.4e-30	100.00	chromatin-remodeling complex subunit ies6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937916.1	7.2e-30	100.00	INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 co...	[more]
XP_022144563.1	1.2e-29	96.92	INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 c...	[more]
XP_004152811.1	1.6e-29	98.46	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus] >XP_011649021.1 ...	[more]
XP_008441777.1	1.6e-29	98.46	PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PRE...	[more]

BLAST of Carg23461 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38495.1	6.1e-23	69.23	YL1 nuclear, C-terminal (InterPro:IPR013272)	[more]
AT2G36740.1	2.8e-04	54.29	sequence-specific DNA binding transcription factors;DNA binding;DNA binding	[more]

BLAST of Carg23461 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9UTE8\|IES6_SCHPO	6.6e-11	50.00	Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 9...	[more]
sp\|Q8BHA0\|IN80C_MOUSE	1.4e-08	42.86	INO80 complex subunit C OS=Mus musculus OX=10090 GN=Ino80c PE=1 SV=1	[more]
sp\|Q6PI98\|IN80C_HUMAN	2.4e-08	41.27	INO80 complex subunit C OS=Homo sapiens OX=9606 GN=INO80C PE=1 SV=1	[more]
sp\|Q5BJY3\|IN80C_RAT	5.3e-08	39.68	INO80 complex subunit C OS=Rattus norvegicus OX=10116 GN=Ino80c PE=2 SV=1	[more]
sp\|P32617\|IES6_YEAST	9.0e-08	38.46	Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Carg23461 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B479\|A0A1S3B479_CUCME	1.1e-29	98.46	INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 ...	[more]
tr\|A0A0A0LJN6\|A0A0A0LJN6_CUCSA	1.1e-29	98.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1	[more]
tr\|A0A2P4M2Z3\|A0A2P4M2Z3_QUESU	2.0e-28	83.10	Protein exordium-like 7 OS=Quercus suber OX=58331 GN=CFP56_75334 PE=4 SV=1	[more]
tr\|A0A2P4J0I1\|A0A2P4J0I1_QUESU	3.4e-28	90.77	Ino80 complex subunit c OS=Quercus suber OX=58331 GN=CFP56_51994 PE=4 SV=1	[more]
tr\|I3SJK2\|I3SJK2_LOTJA	1.3e-27	87.69	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006338	chromatin remodeling

Vocabulary: **Cellular Component**
Term	Definition
GO:0031011	Ino80 complex

Vocabulary: **INTERPRO**
Term	Definition
IPR029525	INO80C/Ies6
IPR013272	Vps72/YL1_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0031011	Ino80 complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23461-RA	Carg23461-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013272	Vps72/YL1, C-terminal	SMART	SM00993	YL1_C_2	coord: 33..62 e-value: 6.3E-13 score: 58.9
IPR013272	Vps72/YL1, C-terminal	PFAM	PF08265	YL1_C	coord: 34..62 e-value: 1.1E-14 score: 53.8
IPR029525	INO80 complex, subunit Ies6	PANTHER	PTHR31200	FAMILY NOT NAMED	coord: 20..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23461	Bhi06G000932	Wax gourd	carwgoB0585

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23461	Cucurbita pepo (Zucchini)	carcpeB0675
Carg23461	Cucumber (Gy14) v2	carcgybB0490
Carg23461	Cucumber (Gy14) v1	carcgyB0554
Carg23461	Cucurbita maxima (Rimu)	carcmaB0670
Carg23461	Cucurbita maxima (Rimu)	carcmaB0671
Carg23461	Cucurbita moschata (Rifu)	carcmoB0652
Carg23461	Cucurbita moschata (Rifu)	carcmoB0653
Carg23461	Cucurbita pepo (Zucchini)	carcpeB0676
Carg23461	Wild cucumber (PI 183967)	carcpiB0521
Carg23461	Cucumber (Chinese Long) v2	carcuB0514
Carg23461	Cucumber (Chinese Long) v3	carcucB0519
Carg23461	Bottle gourd (USVL1VR-Ls)	carlsiB436
Carg23461	Melon (DHL92) v3.5.1	carmeB0486
Carg23461	Melon (DHL92) v3.5.1	carmeB0487
Carg23461	Melon (DHL92) v3.6.1	carmedB0492
Carg23461	Melon (DHL92) v3.6.1	carmedB0493
Carg23461	Watermelon (Charleston Gray)	carwcgB0466
Carg23461	Watermelon (97103) v1	carwmB0478
Carg23461	Watermelon (97103) v2	carwmbB0505