Carg23372 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23372
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NAD(P)H-quinone oxidoreductase subunit M like
Location	Cucurbita_argyrosperma_scaffold_165 : 256123 .. 256898 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACAGCAGCTTCATCTTACATGGTCTTTTCCATGGTGGGTTGGAAAAACGGCAAACAAAACACAAGACCCTCGGCCAGATTTCCCATCTCTGCTCAGAACAATGAAGCTGCAGAGCAACTGAAAGTGGGCGAAGAAGAAGAAGAGGCAAAGCCGAAACCACCACGGTCGCCGCTGCGACCGGTGGAAATGCAGCCAAACGTGAAGAGCAAGAACATGAGCAGAGAGTATGGAGGGCAATGGCTGAGCAGTGTGACTCGGCATGTAAGAATCTATGCAGCTTATATTGACCCTGTTACTTGTGAGTTTGATCAGACCCAAATGGATAAACTTACACTTATTTTGGATCCAAGTAATGAGTTTCTTTGGAATCCTGAAACTTGCAACAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGTATCTCTATCTCTCTCTCTCTCTCTCTCGTTAATTTAGTGGTATCTTTACTCGAATCTTGGCTTGACTGATTCATGATTAATCAATTCTAGAATGATAGACAATTCAAAGATCCATTTTATTTTACTATGTTTCTTTGTTATGAAACTTGAGGAAATCAGGGAGCTCCACTGACGGAATACACACTTCGCCTAATTGGTTCAGACATAGAACACTACATAAGAAAGATGCTTTATGATGGTGAAATCAAGTACAATATGAATGCAAGGGTCCTCAACTTCAGCATGGGAAAACCAAGAATTATGTTCAATAGCAACGATCTGCCTCAAGATCTACAATCATGA

mRNA sequence

ATGGCAACAGCAGCTTCATCTTACATGGTCTTTTCCATGGTGGGTTGGAAAAACGGCAAACAAAACACAAGACCCTCGGCCAGATTTCCCATCTCTGCTCAGAACAATGAAGCTGCAGAGCAACTGAAAGTGGGCGAAGAAGAAGAAGAGGCAAAGCCGAAACCACCACGGTCGCCGCTGCGACCGGTGGAAATGCAGCCAAACGTGAAGAGCAAGAACATGAGCAGAGAGTATGGAGGGCAATGGCTGAGCAGTGTGACTCGGCATGTAAGAATCTATGCAGCTTATATTGACCCTGTTACTTGTGAGTTTGATCAGACCCAAATGGATAAACTTACACTTATTTTGGATCCAAGTAATGAGTTTCTTTGGAATCCTGAAACTTGCAACAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGGAGCTCCACTGACGGAATACACACTTCGCCTAATTGGTTCAGACATAGAACACTACATAAGAAAGATGCTTTATGATGGTGAAATCAAGTACAATATGAATGCAAGGGTCCTCAACTTCAGCATGGGAAAACCAAGAATTATGTTCAATAGCAACGATCTGCCTCAAGATCTACAATCATGA

Coding sequence (CDS)

ATGGCAACAGCAGCTTCATCTTACATGGTCTTTTCCATGGTGGGTTGGAAAAACGGCAAACAAAACACAAGACCCTCGGCCAGATTTCCCATCTCTGCTCAGAACAATGAAGCTGCAGAGCAACTGAAAGTGGGCGAAGAAGAAGAAGAGGCAAAGCCGAAACCACCACGGTCGCCGCTGCGACCGGTGGAAATGCAGCCAAACGTGAAGAGCAAGAACATGAGCAGAGAGTATGGAGGGCAATGGCTGAGCAGTGTGACTCGGCATGTAAGAATCTATGCAGCTTATATTGACCCTGTTACTTGTGAGTTTGATCAGACCCAAATGGATAAACTTACACTTATTTTGGATCCAAGTAATGAGTTTCTTTGGAATCCTGAAACTTGCAACAAAGTCTATGCTTACTTCCAAGAGCTTGTGGATCATTATGAGGGAGCTCCACTGACGGAATACACACTTCGCCTAATTGGTTCAGACATAGAACACTACATAAGAAAGATGCTTTATGATGGTGAAATCAAGTACAATATGAATGCAAGGGTCCTCAACTTCAGCATGGGAAAACCAAGAATTATGTTCAATAGCAACGATCTGCCTCAAGATCTACAATCATGA

Protein sequence

MATAASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEEEAKPKPPRSPLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNSNDLPQDLQS

Homology

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BLAST of Carg23372 vs. NCBI nr
Match: XP_022981611.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita maxima])

HSP 1 Score: 400.2 bits (1027), Expect = 4.2e-108
Identity = 199/204 (97.55%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 1   MATAASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEEEAKPKPPRSPL 60
           M+TAASSYMVFSMVGWKNGKQNTRPSARFPISAQ NEAAEQLKVG EEEEAKPKPP SPL
Sbjct: 1   MSTAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVG-EEEEAKPKPPLSPL 60

Query: 61  RPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 120
           RPVE QPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN
Sbjct: 61  RPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 120

Query: 121 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 180
           EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR
Sbjct: 121 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 180

Query: 181 VLNFSMGKPRIMFNSNDLPQDLQS 205
           VLNFSMGKPRIMFNSNDLPQDLQS
Sbjct: 181 VLNFSMGKPRIMFNSNDLPQDLQS 203

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BLAST of Carg23372 vs. NCBI nr
Match: XP_022940621.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita moschata] >XP_023523685.1 NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 4.5e-102
Identity = 190/204 (93.14%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MATAASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEEEAKPKPPRSPL 60
           MATAASSYMVFSMVGWKNGKQNTRPSARFPISAQ NEAAEQLKVGEE            L
Sbjct: 1   MATAASSYMVFSMVGWKNGKQNTRPSARFPISAQINEAAEQLKVGEEXXXXXXXXXXXXL 60

Query: 61  RPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 120
           RPVE QPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN
Sbjct: 61  RPVETQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 120

Query: 121 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 180
           EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR
Sbjct: 121 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 180

Query: 181 VLNFSMGKPRIMFNSNDLPQDLQS 205
           VLNFSMGKPRIMFNSNDLPQDLQS
Sbjct: 181 VLNFSMGKPRIMFNSNDLPQDLQS 204

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BLAST of Carg23372 vs. NCBI nr
Match: XP_008447195.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 6.7e-98
Identity = 185/207 (89.37%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 2   ATAASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVG---EEEEEAKPKPPRS 61
           A AASSY++FSMVGWKNGKQNT+ + RFPISAQ NEAAEQLKVG   E++E+A PKP  S
Sbjct: 4   AAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKP--S 63

Query: 62  PLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121
           PLRPVE+Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP
Sbjct: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 123

Query: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183

Query: 182 ARVLNFSMGKPRIMFNSNDLPQ-DLQS 205
           ARVLNFSMGKPRIMFN+NDLPQ DLQS
Sbjct: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 208

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BLAST of Carg23372 vs. NCBI nr
Match: XP_004139803.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis sativus] >KGN44204.1 hypothetical protein Csa_7G221360 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 1.9e-92
Identity = 175/205 (85.37%), Postives = 185/205 (90.24%), Query Frame = 0


Query: 2   ATAASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEE-EAKPKPPRSPL 61
           A AASSY++FSMVGWKNG QNT+ + RFPISAQ NEAAEQLK G++EE           L
Sbjct: 4   AAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEXXXXXXXXXXXL 63

Query: 62  RPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 121
           RPVE+Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDPSN
Sbjct: 64  RPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDPSN 123

Query: 122 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 181
           EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR
Sbjct: 124 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 183

Query: 182 VLNFSMGKPRIMFNSNDLPQ-DLQS 205
           VLNFSMGKPRIMFN+NDLPQ DLQS
Sbjct: 184 VLNFSMGKPRIMFNANDLPQDDLQS 208

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BLAST of Carg23372 vs. NCBI nr
Match: XP_022139618.1 (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Momordica charantia])

HSP 1 Score: 328.2 bits (840), Expect = 2.0e-86
Identity = 166/202 (82.18%), Postives = 176/202 (87.13%), Query Frame = 0


Query: 4   AASSYMVFSMVGWKNGKQNTRPSA--RFPISAQNNEAAEQLKVGEEEEEAKPKPPRSPLR 63
           AASSYMV  MVGW+  K +++P+   R PISAQ NEAAEQLKVG  E E          R
Sbjct: 3   AASSYMVSPMVGWREPKGHSKPTTRNRVPISAQANEAAEQLKVG--ENEXXXXXXXXXXR 62

Query: 64  PVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSNE 123
           PVE+Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTLILDPSNE
Sbjct: 63  PVEVQQNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLILDPSNE 122

Query: 124 FLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNARV 183
           FLWNP+TCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNA+V
Sbjct: 123 FLWNPQTCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAKV 182

Query: 184 LNFSMGKPRIMFNSNDLPQDLQ 204
           LNFSMGKPRIMFN+NDLPQ  Q
Sbjct: 183 LNFSMGKPRIMFNNNDLPQPNQ 202

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BLAST of Carg23372 vs. TAIR10
Match: AT4G37925.1 (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)

HSP 1 Score: 248.8 bits (634), Expect = 2.8e-66
Identity = 120/162 (74.07%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 37  EAAEQLKVGEEEEEAKPKPPRSPLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAY 96
           E  E   + EE+   K K   +PLRPVE Q NVKSK M  ++GGQWLSSVTRHVRIYAAY
Sbjct: 45  EVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAY 104

Query: 97  IDPVTCEFDQTQMDKLTLILDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLI 156
           IDP TCEFDQ+QMDKLTLILDP+ EF+W+ E+CNKVY+YFQELVDHYEGAPLTEYTLRLI
Sbjct: 105 IDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLI 164

Query: 157 GSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNSNDL 199
           GSD+EHYIRKML+DGEI+YNM+ARVLNFSMGKPR+ FN++++
Sbjct: 165 GSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205

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BLAST of Carg23372 vs. Swiss-Prot
Match: sp|A7NVJ4|NDHM_VITVI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhM PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 6.6e-73
Identity = 147/207 (71.01%), Postives = 156/207 (75.36%), Query Frame = 0


Query: 4   AASSYMV---FSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEEEAKPKPPRSPL 63
           A SSY     FSM+GW  GK+  R    F ISAQ                          
Sbjct: 3   ATSSYTACTKFSMLGWIGGKRELRKRRAFFISAQXXXXXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  ----RPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 123
               RPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL
Sbjct: 63  XXLPRPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 122

Query: 124 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 183
           DP+NEF+W  ETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIKYN
Sbjct: 123 DPTNEFVWTSETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYN 182

Query: 184 MNARVLNFSMGKPRIMFNSNDLPQDLQ 204
           MNARVLNFSMGKPRI+FN + LPQ++Q
Sbjct: 183 MNARVLNFSMGKPRILFN-DGLPQNVQ 208

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BLAST of Carg23372 vs. Swiss-Prot
Match: sp|A9PJQ8|NDHM_POPJC (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii OX=640484 GN=ndhM PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.6e-72
Identity = 139/202 (68.81%), Postives = 157/202 (77.72%), Query Frame = 0


Query: 4   AASSYMV---FSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEEEAKPKPPRSPL 63
           A+SSYM    FSM+GW  G++  +      +S Q     ++ +        K K P  P 
Sbjct: 3   ASSSYMACAKFSMLGWLGGRRELKMRRVISVSPQEQAEVQESQEVNXXXXXKVKQPVQP- 62

Query: 64  RPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 123
           RPVE Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP TCEFDQTQ DKLTLILDP++
Sbjct: 63  RPVEPQVNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPETCEFDQTQTDKLTLILDPTD 122

Query: 124 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 183
           EF+W  ETC KVY+YFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIKYNMNAR
Sbjct: 123 EFVWTDETCYKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNMNAR 182

Query: 184 VLNFSMGKPRIMFNSNDLPQDL 203
           VLNFSMGKPRI+FN++   QD+
Sbjct: 183 VLNFSMGKPRILFNNDGQLQDV 203

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BLAST of Carg23372 vs. Swiss-Prot
Match: sp|Q2V2S7|NDHM_ARATH (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhM PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-65
Identity = 120/162 (74.07%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 37  EAAEQLKVGEEEEEAKPKPPRSPLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAY 96
           E  E   + EE+   K K   +PLRPVE Q NVKSK M  ++GGQWLSSVTRHVRIYAAY
Sbjct: 45  EVQETETLKEEQSTEKMKKQPTPLRPVEKQLNVKSKGMG-DFGGQWLSSVTRHVRIYAAY 104

Query: 97  IDPVTCEFDQTQMDKLTLILDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLI 156
           IDP TCEFDQ+QMDKLTLILDP+ EF+W+ E+CNKVY+YFQELVDHYEGAPLTEYTLRLI
Sbjct: 105 IDPETCEFDQSQMDKLTLILDPTEEFVWDDESCNKVYSYFQELVDHYEGAPLTEYTLRLI 164

Query: 157 GSDIEHYIRKMLYDGEIKYNMNARVLNFSMGKPRIMFNSNDL 199
           GSD+EHYIRKML+DGEI+YNM+ARVLNFSMGKPR+ FN++++
Sbjct: 165 GSDVEHYIRKMLFDGEIQYNMDARVLNFSMGKPRVQFNTSNI 205

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BLAST of Carg23372 vs. Swiss-Prot
Match: sp|A2XVZ1|NDHM_ORYSI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=ndhM PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.1e-59
Identity = 105/143 (73.43%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 57  RSPLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 116
           + P +P+ +QP  +SKNMSREYGGQWLS  TRH+RIYAAYI+P T  FDQTQMDKLTL+L
Sbjct: 75  QGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLL 134

Query: 117 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 176
           DP++EF+W  ETC KVY  FQ+LVDHYEGA L+EYTLRLIGSD+EH+IRK+LYDGEIKYN
Sbjct: 135 DPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYN 194

Query: 177 MNARVLNFSMGKPRIMFNSNDLP 200
           M +RVLNFSMGKPRI FNS+ +P
Sbjct: 195 MMSRVLNFSMGKPRIKFNSSQIP 217

[Close]

BLAST of Carg23372 vs. Swiss-Prot
Match: sp|Q7FB12|NDHM_ORYSJ (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ndhM PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.1e-59
Identity = 105/143 (73.43%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 57  RSPLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLIL 116
           + P +P+ +QP  +SKNMSREYGGQWLS  TRH+RIYAAYI+P T  FDQTQMDKLTL+L
Sbjct: 75  QGPAQPLPVQPLAESKNMSREYGGQWLSCTTRHIRIYAAYINPETNAFDQTQMDKLTLLL 134

Query: 117 DPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYN 176
           DP++EF+W  ETC KVY  FQ+LVDHYEGA L+EYTLRLIGSD+EH+IRK+LYDGEIKYN
Sbjct: 135 DPTDEFVWTDETCQKVYDEFQDLVDHYEGAELSEYTLRLIGSDLEHFIRKLLYDGEIKYN 194

Query: 177 MNARVLNFSMGKPRIMFNSNDLP 200
           M +RVLNFSMGKPRI FNS+ +P
Sbjct: 195 MMSRVLNFSMGKPRIKFNSSQIP 217

[Close]

BLAST of Carg23372 vs. TrEMBL
Match: tr|A0A1S3BGV5|A0A1S3BGV5_CUCME (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489705 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 4.4e-98
Identity = 185/207 (89.37%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 2   ATAASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVG---EEEEEAKPKPPRS 61
           A AASSY++FSMVGWKNGKQNT+ + RFPISAQ NEAAEQLKVG   E++E+A PKP  S
Sbjct: 4   AAAASSYIMFSMVGWKNGKQNTKHTLRFPISAQLNEAAEQLKVGDQEEDQEQATPKP--S 63

Query: 62  PLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 121
           PLRPVE+Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP
Sbjct: 64  PLRPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDP 123

Query: 122 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 181
           SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN
Sbjct: 124 SNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMN 183

Query: 182 ARVLNFSMGKPRIMFNSNDLPQ-DLQS 205
           ARVLNFSMGKPRIMFN+NDLPQ DLQS
Sbjct: 184 ARVLNFSMGKPRIMFNANDLPQDDLQS 208

[Close]

BLAST of Carg23372 vs. TrEMBL
Match: tr|A0A0A0K5H1|A0A0A0K5H1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G221360 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.2e-92
Identity = 175/205 (85.37%), Postives = 185/205 (90.24%), Query Frame = 0


Query: 2   ATAASSYMVFSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEE-EAKPKPPRSPL 61
           A AASSY++FSMVGWKNG QNT+ + RFPISAQ NEAAEQLK G++EE           L
Sbjct: 4   AAAASSYIMFSMVGWKNGIQNTKHTLRFPISAQINEAAEQLKAGDQEEXXXXXXXXXXXL 63

Query: 62  RPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPSN 121
           RPVE+Q NVKSKNM REYGGQWLSSVTRHVRIYAAYIDP+TCEFDQTQMDKLTL+LDPSN
Sbjct: 64  RPVEVQQNVKSKNMGREYGGQWLSSVTRHVRIYAAYIDPITCEFDQTQMDKLTLLLDPSN 123

Query: 122 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 181
           EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR
Sbjct: 124 EFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNAR 183

Query: 182 VLNFSMGKPRIMFNSNDLPQ-DLQS 205
           VLNFSMGKPRIMFN+NDLPQ DLQS
Sbjct: 184 VLNFSMGKPRIMFNANDLPQDDLQS 208

[Close]

BLAST of Carg23372 vs. TrEMBL
Match: tr|A0A2N9G9Z3|A0A2N9G9Z3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24167 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 9.9e-74
Identity = 148/210 (70.48%), Postives = 160/210 (76.19%), Query Frame = 0


Query: 4   AASSYMV---FSMVGWKNGKQNTRPSARFPISAQNNEAAEQLKVGEEEEEAKPKPPR--- 63
           A SSYM    FSM GW  GK+  R    F ISAQ  +A                      
Sbjct: 3   AISSYMACTKFSMSGWIGGKREMRKRNPFSISAQQQQAXXXXXXXXXXXXXXXXXXXXXX 62

Query: 64  ----SPLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLT 123
               +PLRPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLT
Sbjct: 63  XQQGTPLRPVEPQVNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLT 122

Query: 124 LILDPSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEI 183
           LILDP+ EF+WN ETCNKVY+YFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+L+DGEI
Sbjct: 123 LILDPTEEFVWNSETCNKVYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLFDGEI 182

Query: 184 KYNMNARVLNFSMGKPRIMFNSNDLPQDLQ 204
           KYNMNARVLNFSMGKPR++FN +  PQD+Q
Sbjct: 183 KYNMNARVLNFSMGKPRVLFNHDGQPQDVQ 212

[Close]

BLAST of Carg23372 vs. TrEMBL
Match: tr|A0A0F7GZI2|A0A0F7GZI2_9ROSI (NADH dehydrogenase-like complex M OS=Francoa sonchifolia OX=23250 GN=NDHM PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.1e-71
Identity = 144/198 (72.73%), Postives = 159/198 (80.30%), Query Frame = 0


Query: 4   AASSYMV---FSMVGWKNGKQNTRPSARFPISAQN-NEAAEQLKVGEEEEEAKPKPPRSP 63
           A SSYM    FS+ G   GK   +    F ISAQ   E  E  K+ +++E+   K  ++ 
Sbjct: 3   ATSSYMASTKFSLFGLIGGKSRLKNKWVFSISAQQPTEVQESEKITDDKEDKLKK--QTV 62

Query: 64  LRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILDPS 123
           LRPVE Q NV+SKNMSREYGGQWLSS TRHVRIYAAYIDP TC FDQTQMDKLTLILDP+
Sbjct: 63  LRPVEPQVNVQSKNMSREYGGQWLSSATRHVRIYAAYIDPETCAFDQTQMDKLTLILDPT 122

Query: 124 NEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNMNA 183
           NEFLW PETCN VY YFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIKYNMNA
Sbjct: 123 NEFLWTPETCNLVYCYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNMNA 182

Query: 184 RVLNFSMGKPRIMFNSND 198
           RVLNFSMGKPRI+FN+N+
Sbjct: 183 RVLNFSMGKPRILFNNNE 198

[Close]

BLAST of Carg23372 vs. TrEMBL
Match: tr|A0A0F7H016|A0A0F7H016_9ROSI (NADH dehydrogenase-like complex M OS=California macrophylla OX=337344 GN=NDHM PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 6.0e-71
Identity = 146/206 (70.87%), Postives = 163/206 (79.13%), Query Frame = 0


Query: 3   TAASSYMV---FSMVGWK-NGKQNTRPSARFPISAQNNEAAEQLKVGE-EEEEAKPKPPR 62
           T  SS MV   FSM+GW    +   R S    +SA+   A  Q+K  E + +EA+   PR
Sbjct: 2   TVPSSCMVSTKFSMLGWTVRAQARKRSSFGLRVSAEQQPAEAQVKEDEGKAKEAQVMKPR 61

Query: 63  SPLRPVEMQPNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPVTCEFDQTQMDKLTLILD 122
           +  RPVE Q NVKSKNMSREYGGQWLSSVTRHVRIYAAYIDP T +FDQTQMDKLTLILD
Sbjct: 62  TIPRPVEPQTNVKSKNMSREYGGQWLSSVTRHVRIYAAYIDPETYKFDQTQMDKLTLILD 121

Query: 123 PSNEFLWNPETCNKVYAYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYDGEIKYNM 182
           P+NEFLW  ETC K+Y+YFQELVDHYEGAPLTEYTLRLIGSDIEHYIRK+LYDGEIKYNM
Sbjct: 122 PTNEFLWTDETCTKIYSYFQELVDHYEGAPLTEYTLRLIGSDIEHYIRKLLYDGEIKYNM 181

Query: 183 NARVLNFSMGKPRIMFNSNDL-PQDL 203
           NAR LNFSMGKPRI+FN  D+ PQD+
Sbjct: 182 NARTLNFSMGKPRILFNDKDVQPQDV 207

The following BLAST results are available for this feature:

BLAST of Carg23372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022981611.1	4.2e-108	97.55	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita maxima]	[more]
XP_022940621.1	4.5e-102	93.14	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucurbita moschata] >XP...	[more]
XP_008447195.1	6.7e-98	89.37	PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis melo...	[more]
XP_004139803.1	1.9e-92	85.37	PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Cucumis sati...	[more]
XP_022139618.1	2.0e-86	82.18	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Momordica charantia]	[more]

BLAST of Carg23372 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37925.1	2.8e-66	74.07	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex	[more]

BLAST of Carg23372 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A7NVJ4\|NDHM_VITVI	6.6e-73	71.01	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera OX=297...	[more]
sp\|A9PJQ8\|NDHM_POPJC	5.6e-72	68.81	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii OX=640...	[more]
sp\|Q2V2S7\|NDHM_ARATH	5.1e-65	74.07	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|A2XVZ1\|NDHM_ORYSI	7.1e-59	73.43	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. i...	[more]
sp\|Q7FB12\|NDHM_ORYSJ	7.1e-59	73.43	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. j...	[more]

BLAST of Carg23372 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BGV5\|A0A1S3BGV5_CUCME	4.4e-98	89.37	NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A0A0K5H1\|A0A0A0K5H1_CUCSA	1.2e-92	85.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G221360 PE=4 SV=1	[more]
tr\|A0A2N9G9Z3\|A0A2N9G9Z3_FAGSY	9.9e-74	70.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24167 PE=4 SV=1	[more]
tr\|A0A0F7GZI2\|A0A0F7GZI2_9ROSI	2.1e-71	72.73	NADH dehydrogenase-like complex M OS=Francoa sonchifolia OX=23250 GN=NDHM PE=2 S...	[more]
tr\|A0A0F7H016\|A0A0F7H016_9ROSI	6.0e-71	70.87	NADH dehydrogenase-like complex M OS=California macrophylla OX=337344 GN=NDHM PE...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR018922	NdhM

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23372-RA	Carg23372-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018922	NAD(P)H-quinone oxidoreductase subunit M	PFAM	PF10664	NdhM	coord: 83..191 e-value: 3.1E-45 score: 152.7
IPR018922	NAD(P)H-quinone oxidoreductase subunit M	PANTHER	PTHR36900	FAMILY NOT NAMED	coord: 1..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..39

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23372	Cla005578	Watermelon (97103) v1	carwmB0074
Carg23372	ClCG09G021820	Watermelon (Charleston Gray)	carwcgB0075
Carg23372	CmaCh01G010350	Cucurbita maxima (Rimu)	carcmaB0099
Carg23372	CmoCh01G010740	Cucurbita moschata (Rifu)	carcmoB0107
Carg23372	Lsi02G017770	Bottle gourd (USVL1VR-Ls)	carlsiB067
Carg23372	Cp4.1LG02g00190	Cucurbita pepo (Zucchini)	carcpeB0110
Carg23372	Cla97C09G183270	Watermelon (97103) v2	carwmbB0073

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23372	Silver-seed gourd	carcarB089
Carg23372	Cucurbita maxima (Rimu)	carcmaB0098
Carg23372	Cucurbita moschata (Rifu)	carcmoB0106
Carg23372	Cucurbita pepo (Zucchini)	carcpeB0111
Carg23372	Wax gourd	carwgoB0088