Carg23055 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23055
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NAC domain-containing protein 105-like
Location	Cucurbita_argyrosperma_scaffold_163 : 251548 .. 252559 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAATTCAAGTCACTCCCGTTCGGCTACGTCTTCGTTCCTATCGACGAAGAATTATTGAGGTATTATCTTTTCCACAAGATTGTTGGAGAAACTGATCCACCAATTGCGCTTCCTGTGCTCGATCTTTTTTCTACAGGATTGTTGGAGACTTTGTTCCATCAATTGCGCTTCATGTGTTCGATCTTTACACCCAAGAGCCTTCTCTAATATGGCAACAATGTGGAGGGATTGATGAGAAAGAAATCTACTTCTTCACCGACCTTAATAGGAGAAATCTCCTGTTATTAGAAAAGGCGGCTCTAATGGTGTCACTCGGAGTGGTGAAAACAGAGGTCAACGAGTATTTTCTTCCGTTAATAATGTCCTAATTGGTAGTATCAAACGGTTTCATTACAAGACTCTTCATGACAAAGCTAATGACAATGATTGTTCTTGGATCAAGCTCGAGTACACAATTGATCCTATTTTCATACAAAAAGTGTTCGGGTATGATTTCTACGTACTCTGCATGATTCGAAGAAGGATGTTAAAAAACGGAAAAAAAATGCAGGACAATAATACAAAAATCATTTGTCTCAAGGTGCTCAACAACAACCACTATAACAATGCATACAAACATATATGATCAAAATTATGAACTACAAGAAATCACTCCCAACATGAATGTTACTTATCATTTCTTATCGACAAAAGTTGTATATTTTTATTTTATAATTGTAAATAATTTTATTTTGTTTGTATGAATTTTTTTTAATGATGTTCATAATTTTTTTTTTTAATTTTGCACCGTCCAGTCCAGTCCACATGCACAATTTTCAAATGATGATATGACGTTTGCAACTTAGTTTAAAAAAGAATTAAATTCAAGTCACTCCTATTCGGCTACGTCTTCGCTCCTACCGATGAAGAATTATTGAGCTATTATCTTTTCCACAAGATTGTTGGAGGAACTGTTCCACCAACTGCTCTTACTGTGATCAATCTTTACACACAAGAGTCTTCTCTAATA

mRNA sequence

ATTGAATTCAAGTCACTCCCGTTCGGCTACGTCTTCGTTCCTATCGACGAAGAATTATTGAGGATTGTTGGAGACTTTGTTCCATCAATTGCGCTTCATGTGTTCGATCTTTACACCCAAGAGCCTTCTCTAATATGGCAACAATGTGGAGGGATTGATGAGAAAGAAATCTACTTCTTCACCGACCTTAATAGGAGAAATCTCCTAAAAGGCGGCTCTAATGGTGTCACTCGGAGTGGTGAAAACAGAGGTCAACGAGTATTTTCTTCCGTTAATAATGTCCTAATTGGTAGTATCAAACGGTTTCATTACAAGACTCTTCATGACAAAGCTAATGACAATGATTGTTCTTGGATCAAGCTCGAGTACACAATTGATCCTATTTTCATACAAAAAGTGTTCGGGTATGATTTCTACGTACTCTGCATGATTCGAAGAAGGATGTTAAAAAACGGAAAAAAAATGCAGGACAATAATACAAAAATCATTTGTCTCAAGTCACTCCTATTCGGCTACGTCTTCGCTCCTACCGATGAAGAATTATTGAGCTATTATCTTTTCCACAAGATTGTTGGAGGAACTGTTCCACCAACTGCTCTTACTGTGATCAATCTTTACACACAAGAGTCTTCTCTAATA

Coding sequence (CDS)

ATTGAATTCAAGTCACTCCCGTTCGGCTACGTCTTCGTTCCTATCGACGAAGAATTATTGAGGATTGTTGGAGACTTTGTTCCATCAATTGCGCTTCATGTGTTCGATCTTTACACCCAAGAGCCTTCTCTAATATGGCAACAATGTGGAGGGATTGATGAGAAAGAAATCTACTTCTTCACCGACCTTAATAGGAGAAATCTCCTAAAAGGCGGCTCTAATGGTGTCACTCGGAGTGGTGAAAACAGAGGTCAACGAGTATTTTCTTCCGTTAATAATGTCCTAATTGGTAGTATCAAACGGTTTCATTACAAGACTCTTCATGACAAAGCTAATGACAATGATTGTTCTTGGATCAAGCTCGAGTACACAATTGATCCTATTTTCATACAAAAAGTGTTCGGGTATGATTTCTACGTACTCTGCATGATTCGAAGAAGGATGTTAAAAAACGGAAAAAAAATGCAGGACAATAATACAAAAATCATTTGTCTCAAGTCACTCCTATTCGGCTACGTCTTCGCTCCTACCGATGAAGAATTATTGAGCTATTATCTTTTCCACAAGATTGTTGGAGGAACTGTTCCACCAACTGCTCTTACTGTGATCAATCTTTACACACAAGAGTCTTCTCTAATA

Protein sequence

IEFKSLPFGYVFVPIDEELLRIVGDFVPSIALHVFDLYTQEPSLIWQQCGGIDEKEIYFFTDLNRRNLLKGGSNGVTRSGENRGQRVFSSVNNVLIGSIKRFHYKTLHDKANDNDCSWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLKNGKKMQDNNTKIICLKSLLFGYVFAPTDEELLSYYLFHKIVGGTVPPTALTVINLYTQESSLI

Homology

[Close]

BLAST of Carg23055 vs. NCBI nr
Match: XP_022934631.1 (NAC domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 174.5 bits (441), Expect = 3.9e-40
Identity = 87/154 (56.49%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 7   PFGYVFVPIDEELL------RIVGDFVPSIALHVFDLYTQEPSLIWQQCGGIDEKEIYFF 66
           PFGY F P DEELL      +IVGD VPSI+L V D+Y+ EP++IWQQCGG+++K+IYFF
Sbjct: 7   PFGYDFAPTDEELLIYYLFHKIVGDIVPSISLPVIDIYSHEPAMIWQQCGGMEDKDIYFF 66

Query: 67  TDLNR---RNLLKGGSNGVTRSGENRGQRVFSSVNNVLIGSIKRFHYKTLHD-KANDNDC 126
           T L +   R + K G NG T SGE++G +VFSS NN  IG+IKRFHY+T     AND+DC
Sbjct: 67  TTLKKKKSRIIRKVGLNGGTWSGESKGHKVFSSANNAPIGTIKRFHYETSGGVNANDDDC 126

Query: 127 SWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLK 151
           SWI  EYT+DP  +   F +D YV+C+IR+R+LK
Sbjct: 127 SWIMHEYTLDPTVLTNGFVHDSYVVCLIRKRILK 160

[Close]

BLAST of Carg23055 vs. NCBI nr
Match: XP_023528741.1 (transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 3.9e-40
Identity = 87/154 (56.49%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 7   PFGYVFVPIDEELL------RIVGDFVPSIALHVFDLYTQEPSLIWQQCGGIDEKEIYFF 66
           PFGY F P DEELL      +IVGD VPSI+L V D+Y+ EP++IWQQCGG+++K+IYFF
Sbjct: 7   PFGYDFAPTDEELLIYYLFHKIVGDIVPSISLPVIDIYSHEPAMIWQQCGGMEDKDIYFF 66

Query: 67  TDLNR---RNLLKGGSNGVTRSGENRGQRVFSSVNNVLIGSIKRFHYKTLHD-KANDNDC 126
           T L +   R + K G NG T SGE++G +VFSS NN  IG+IKRFHY+T     AND+DC
Sbjct: 67  TTLKKKKSRIIRKVGINGGTWSGESKGHKVFSSANNAPIGTIKRFHYETSGGVNANDDDC 126

Query: 127 SWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLK 151
           SWI  EYT+DP  +   F +D YV+C+IR+R+LK
Sbjct: 127 SWIMHEYTLDPTVLTNGFVHDSYVVCLIRKRILK 160

[Close]

BLAST of Carg23055 vs. NCBI nr
Match: XP_011660358.1 (PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 78/166 (46.99%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 6   LPFGYVFVPIDEELL------RIVGDFVPSIALHVFDLYTQEPSLIWQQCGGIDEKEIYF 65
           +P GYVF P +EELL      +++G+    + L V DLYTQEPS IWQQC G+D K+IYF
Sbjct: 6   IPVGYVFCPTEEELLGYYLYSKVLGEQASPLVLPVIDLYTQEPSQIWQQCRGVDNKDIYF 65

Query: 66  FTDLNR---RNLLKGGSNGVTRSGENRGQRVFSS-VNNVLIGSIKRFHYKTLHDKANDND 125
           FT L +   R + K GSNG T SGEN+ Q+VFSS ++N+L+G++KRF Y+    K    D
Sbjct: 66  FTTLQKKKSRIIRKVGSNGGTWSGENKPQQVFSSTIDNLLLGTMKRFRYEKSQVK---ED 125

Query: 126 CSWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLKNGKKMQDNNTK 162
           C+WI  EYT++P  + +   +D YVLCMIR++++K+ K +  +N +
Sbjct: 126 CTWIMYEYTLNPFIVPEGLVHDSYVLCMIRKKIVKSEKMVMASNKR 168

[Close]

BLAST of Carg23055 vs. NCBI nr
Match: XP_008443570.1 (PREDICTED: NAC domain-containing protein 105-like [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 77/160 (48.12%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 6   LPFGYVFVPIDEELL------RIVGDFVPSIALHVFDLYTQEPSLIWQQCGGIDEKEIYF 65
           LP G+ F P DEELL      +++G+  P + L V DLY  EPS IWQ+CGG+D++++YF
Sbjct: 6   LPLGFTFCPTDEELLGYYLFNKVLGEQAPLLELPVIDLYIHEPSEIWQKCGGVDKQDVYF 65

Query: 66  FTDLNR---RNLLKGGSNGVTRSGENRGQRVFSS-VNNVLIGSIKRFHYK--TLHDKAND 125
           FT L +   R + K GSNG T S ENR ++VFSS ++++L+GS+KRFHY+     D  + 
Sbjct: 66  FTTLKKKKSRIIRKVGSNGNTWSCENRARQVFSSTIDHLLLGSVKRFHYQKPKAKDCTDI 125

Query: 126 NDCSWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLKNGK 154
           NDC+WI  EYT+DP  + K   +D YVLCMIR++++K+ K
Sbjct: 126 NDCTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKIVKSQK 165

[Close]

BLAST of Carg23055 vs. NCBI nr
Match: KGN65107.1 (hypothetical protein Csa_1G224380 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.0e-27
Identity = 71/158 (44.94%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 9   GYVFVPIDEELL------RIVGDFVPSIALHVFDLYTQEPSLIWQQCGGIDEKEIYFFTD 68
           GY F P DEELL      ++VG FVP I L V D+YT+EP  IWQQCGG+D ++++FFT 
Sbjct: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTC 61

Query: 69  LNR---RNLLKGGSNGVTRSGENRGQRVFSSVNNVLIGSIKRFHYKTLHDKA---NDNDC 128
           L +   R + K G NG T SGE++  +VFS  NN L+G  KRFHY+    K    ++N+ 
Sbjct: 62  LKKKKSRVVRKVGPNGATWSGESKATKVFSH-NNTLVGDFKRFHYENPKMKKGGHHNNNY 121

Query: 129 SWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLKNGKK 155
           SWI  EYT+ P  + +   +  +VL M+R+++LK  K+
Sbjct: 122 SWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKR 158

[Close]

BLAST of Carg23055 vs. TrEMBL
Match: tr|A0A1S3B8F1|A0A1S3B8F1_CUCME (NAC domain-containing protein 105-like OS=Cucumis melo OX=3656 GN=LOC103487127 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.4e-33
Identity = 77/160 (48.12%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 6   LPFGYVFVPIDEELL------RIVGDFVPSIALHVFDLYTQEPSLIWQQCGGIDEKEIYF 65
           LP G+ F P DEELL      +++G+  P + L V DLY  EPS IWQ+CGG+D++++YF
Sbjct: 6   LPLGFTFCPTDEELLGYYLFNKVLGEQAPLLELPVIDLYIHEPSEIWQKCGGVDKQDVYF 65

Query: 66  FTDLNR---RNLLKGGSNGVTRSGENRGQRVFSS-VNNVLIGSIKRFHYK--TLHDKAND 125
           FT L +   R + K GSNG T S ENR ++VFSS ++++L+GS+KRFHY+     D  + 
Sbjct: 66  FTTLKKKKSRIIRKVGSNGNTWSCENRARQVFSSTIDHLLLGSVKRFHYQKPKAKDCTDI 125

Query: 126 NDCSWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLKNGK 154
           NDC+WI  EYT+DP  + K   +D YVLCMIR++++K+ K
Sbjct: 126 NDCTWIMYEYTLDPSIVPKGLVHDSYVLCMIRKKIVKSQK 165

[Close]

BLAST of Carg23055 vs. TrEMBL
Match: tr|A0A0A0LWA5|A0A0A0LWA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G224380 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.6e-28
Identity = 71/158 (44.94%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 9   GYVFVPIDEELL------RIVGDFVPSIALHVFDLYTQEPSLIWQQCGGIDEKEIYFFTD 68
           GY F P DEELL      ++VG FVP I L V D+YT+EP  IWQQCGG+D ++++FFT 
Sbjct: 2   GYTFCPTDEELLCYYLYHKVVGGFVPPIMLSVVDIYTKEPPQIWQQCGGVDGQDVHFFTC 61

Query: 69  LNR---RNLLKGGSNGVTRSGENRGQRVFSSVNNVLIGSIKRFHYKTLHDKA---NDNDC 128
           L +   R + K G NG T SGE++  +VFS  NN L+G  KRFHY+    K    ++N+ 
Sbjct: 62  LKKKKSRVVRKVGPNGATWSGESKATKVFSH-NNTLVGDFKRFHYENPKMKKGGHHNNNY 121

Query: 129 SWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLKNGKK 155
           SWI  EYT+ P  + +   +  +VL M+R+++LK  K+
Sbjct: 122 SWIMYEYTLHPNLVPEGVVHHSFVLFMLRKKILKQDKR 158

[Close]

BLAST of Carg23055 vs. TrEMBL
Match: tr|A0A2P4M4K7|A0A2P4M4K7_QUESU (Nac domain-containing protein 86 OS=Quercus suber OX=58331 GN=CFP56_44870 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.8e-13
Identity = 77/237 (32.49%), Postives = 103/237 (43.46%), Query Frame = 0


Query: 7   PFGYVFVPIDEELLR------IVG----DFVPSIALHVFDLY--TQEPSLIWQQCGG--- 66
           P G+ F P DEEL+R      + G    D VP   +   DLY    EPS IW+Q GG   
Sbjct: 6   PVGFRFRPTDEELVRSYLYPKVTGTQTHDLVPKHDIPEHDLYAPNTEPSKIWKQFGGQNL 65

Query: 67  ---IDEKEIYFFTDLNRRNLLKGGSNGVTRSGENRGQRVFSSVNNVL---------IGSI 126
               +E E+ FFT L R +            G  +G     S  NVL         IG  
Sbjct: 66  EENQEELELLFFTRLKRVSSTGSRIKRTIGRGCWKGDASGKSAKNVLETKSKTMKRIGFK 125

Query: 127 KRFHYKTLHDKANDNDCSWIKLEYTIDPIFIQKVFGYDFYVLCMIRRRMLKN-------- 186
           K FHYK  +D++ D + SWI  E ++D  F++     D  V+C +R+   K         
Sbjct: 126 KTFHYK--NDQSKDGN-SWILHELSLDEFFLRHAKIGDM-VVCRLRKHPKKEEIIPSAHA 185

Query: 187 -GKKMQDNNTKIICLKSLL---------------FGYVFAPTDEELLSYYLFHKIVG 193
             +  QD N  +  L  LL                GY F PTDEEL+ YYL+ K++G
Sbjct: 186 PSQTSQDTNLMLEFLLELLQSNSREITMAPTMIPEGYRFCPTDEELVLYYLYPKVIG 238

[Close]

BLAST of Carg23055 vs. TrEMBL
Match: tr|A0A0A0KXM1|A0A0A0KXM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-09
Identity = 56/175 (32.00%), Postives = 84/175 (48.00%), Query Frame = 0


Query: 9   GYVFVPIDEELL-----RIVGDFVPSIALHVFDLY-TQEPSLIWQQCGGIDEKEIYFFTD 68
           G  F P D++LL     +I G      A+  FDLY   EP  IWQ  GGID +++YFFT 
Sbjct: 17  GVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTK 76

Query: 69  LNRRNLLKG----------GSNGVTRSGENRGQRVF-SSVNNVLIGSIKRFHYKTLHDKA 128
           L R     G          G    T SGEN    ++ +  +  +IG  KRF Y+  ++  
Sbjct: 77  LKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNKDHEQIIGYRKRFRYE--NESL 136

Query: 129 NDNDCSWIKLEYTIDPIFIQKVFGYDFYVLCMIR-----RRMLKNGKKMQDNNTK 162
            ++   WI  EY++ P +++       YVLC IR     +R L+   +++ +N K
Sbjct: 137 EEHHGEWIMHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETESELKQSNKK 189

[Close]

BLAST of Carg23055 vs. TrEMBL
Match: tr|A0A0A0LFJ5|A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 55/156 (35.26%), Postives = 77/156 (49.36%), Query Frame = 0


Query: 9   GYVFVPIDEELL-----RIVGDFVPSIALHVFDLY-TQEPSLIWQQCGGIDEKEIYFFTD 68
           G  F P D++LL     +I G      A+  FDLY   EP  IWQ  GGID +++YFFT 
Sbjct: 17  GVKFRPTDQQLLHYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDGEDLYFFTK 76

Query: 69  LNRRNLLKG----------GSNGVTRSGENRGQRVF-SSVNNVLIGSIKRFHYKTLHDKA 128
           L R     G          G    T SGEN    ++ +  +  +IG  KRF Y+  ++ +
Sbjct: 77  LKRSTTNSGNLSTHINRKIGLVNGTWSGENSASPIYVNEDDQQIIGYRKRFRYE--NESS 136

Query: 129 NDNDCSWIKLEYTIDPIFIQKVFGYD-FYVLCMIRR 147
            ++   WI  EY + P ++ +  G D  YVLC IRR
Sbjct: 137 EEHHGEWIMHEYNLHPNYLCE--GVDPNYVLCRIRR 168

The following BLAST results are available for this feature:

BLAST of Carg23055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934631.1	3.9e-40	56.49	NAC domain-containing protein 12-like [Cucurbita moschata]	[more]
XP_023528741.1	3.9e-40	56.49	transcription factor JUNGBRUNNEN 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_011660358.1	1.6e-33	46.99	PREDICTED: uncharacterized protein LOC105436381 [Cucumis sativus]	[more]
XP_008443570.1	2.1e-33	48.13	PREDICTED: NAC domain-containing protein 105-like [Cucumis melo]	[more]
KGN65107.1	1.0e-27	44.94	hypothetical protein Csa_1G224380 [Cucumis sativus]	[more]

BLAST of Carg23055 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg23055 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg23055 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8F1\|A0A1S3B8F1_CUCME	1.4e-33	48.13	NAC domain-containing protein 105-like OS=Cucumis melo OX=3656 GN=LOC103487127 P...	[more]
tr\|A0A0A0LWA5\|A0A0A0LWA5_CUCSA	6.6e-28	44.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G224380 PE=4 SV=1	[more]
tr\|A0A2P4M4K7\|A0A2P4M4K7_QUESU	7.8e-13	32.49	Nac domain-containing protein 86 OS=Quercus suber OX=58331 GN=CFP56_44870 PE=4 S...	[more]
tr\|A0A0A0KXM1\|A0A0A0KXM1_CUCSA	5.2e-09	32.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296900 PE=4 SV=1	[more]
tr\|A0A0A0LFJ5\|A0A0A0LFJ5_CUCSA	2.0e-08	35.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G838730 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR036093	NAC_dom_sf
IPR003441	NAC-dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23055-RA	Carg23055-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 7..124 e-value: 4.7E-5 score: 24.3
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 6..147 score: 10.0
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 168..213 score: 11.116
IPR036093	NAC domain superfamily	GENE3D	G3DSA:3.30.310.150		coord: 16..170 e-value: 1.3E-6 score: 30.4
IPR036093	NAC domain superfamily	SUPERFAMILY	SSF101941	NAC domain	coord: 4..145
IPR036093	NAC domain superfamily	SUPERFAMILY	SSF101941	NAC domain	coord: 162..208
None	No IPR available	PANTHER	PTHR31989	FAMILY NOT NAMED	coord: 4..154

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23055	CmoCh11G014460	Cucurbita moschata (Rifu)	carcmoB0997
Carg23055	Cp4.1LG04g07310	Cucurbita pepo (Zucchini)	carcpeB1033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg23055	Silver-seed gourd	carcarB404
Carg23055	Cucumber (Gy14) v2	carcgybB0727
Carg23055	Cucumber (Gy14) v2	carcgybB0729
Carg23055	Cucumber (Gy14) v1	carcgyB0824
Carg23055	Cucumber (Gy14) v1	carcgyB0825
Carg23055	Cucurbita maxima (Rimu)	carcmaB1025
Carg23055	Cucurbita maxima (Rimu)	carcmaB1026
Carg23055	Cucurbita maxima (Rimu)	carcmaB1027
Carg23055	Cucurbita moschata (Rifu)	carcmoB0998
Carg23055	Cucurbita moschata (Rifu)	carcmoB0999
Carg23055	Cucurbita pepo (Zucchini)	carcpeB1032
Carg23055	Cucurbita pepo (Zucchini)	carcpeB1031
Carg23055	Wild cucumber (PI 183967)	carcpiB0766
Carg23055	Wild cucumber (PI 183967)	carcpiB0767
Carg23055	Cucumber (Chinese Long) v2	carcuB0750
Carg23055	Cucumber (Chinese Long) v2	carcuB0751
Carg23055	Cucumber (Chinese Long) v3	carcucB0769
Carg23055	Cucumber (Chinese Long) v3	carcucB0770
Carg23055	Melon (DHL92) v3.6.1	carmedB0739
Carg23055	Bottle gourd (USVL1VR-Ls)	carlsiB671
Carg23055	Bottle gourd (USVL1VR-Ls)	carlsiB673
Carg23055	Melon (DHL92) v3.5.1	carmeB0726
Carg23055	Melon (DHL92) v3.5.1	carmeB0728
Carg23055	Melon (DHL92) v3.6.1	carmedB0737
Carg23055	Watermelon (Charleston Gray)	carwcgB0709
Carg23055	Watermelon (Charleston Gray)	carwcgB0710
Carg23055	Watermelon (97103) v1	carwmB0731
Carg23055	Watermelon (97103) v1	carwmB0732
Carg23055	Watermelon (97103) v2	carwmbB0767
Carg23055	Watermelon (97103) v2	carwmbB0768
Carg23055	Wax gourd	carwgoB0867