Carg22898 (gene) Silver-seed gourd

Overview
NameCarg22898
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPlexin-C1 like
LocationCucurbita_argyrosperma_scaffold_124 : 199684 .. 200639 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAAGCAGTTGAAAGAGAATCAAGAACCACTAATCTCCGGCGAGTTTCTGGCGGTGGAATCGACGAGGACGACTTGTAATCCTTGTGATTTTCACTCAGCGAAGGCGGACAAGGAAGTGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACAGAGTCGCCGAGATCAGTAACGAAGGTTGCGGACTGGAGGAAGAAATTGGCATATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAGGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATGAATTCGATTGGAGATTGGTGCGATGTTGGATATCAATGTAATCATCATCATCATCATCATAATCCTCCTCATTTTTATCATAACCGCGTTACTCCACAAATGAACGTTGTAATTTTCTCGCGGCCGATCTTGCCGAGCTCGCCACTCAGCGGGAAGAACACACTTAGGGCTTTAAATTAAGGTACACTAAAAATCAAGGTACTGTTTCTCAATCGGGCGGTATTTGTGTTTTCCATTTCGATTTCGAATCTGTGAAATTAATTGAATCTTTGAGAAAACTGAAGGTTTCAATTCTTGTGATTGAGTTAGGTTTTGCTCCTGATTTTTGCGATTGGTTAGACTGCGCAGAAAAGATTGGGAAATTTTGATCTCCGGCATACGCCAAATTTTCTGGCTGCTTAGTTTTTAGAGTTTGATTAAATTTGGAGGAAGAAATTAGAAGGATGAACAGTGATACAGAATCTGGAGATCAAAACCGCTACTGTAAAGTCTAATTTGAATGAAAAAGAAGAAGAAATGCATGAATTCTGAGATGTAAATAAATTTCTGTCTCTCTCTGTTTCTTTGATATTTTGAAACTACAATTATATATAATAGCAATTATTTTTTAAACCATTTAAAAATATGCAATTCTTCATGAGACCTAAATTTGT

mRNA sequence

ATGACGAAGCAGTTGAAAGAGAATCAAGAACCACTAATCTCCGGCGAGTTTCTGGCGGTGGAATCGACGAGGACGACTTGTAATCCTTGTGATTTTCACTCAGCGAAGGCGGACAAGGAAGTGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACAGAGTCGCCGAGATCAGTAACGAAGGTTGCGGACTGGAGGAAGAAATTGGCATATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAGGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATGAATTCGATTGGAGATTGGTGCGATGTTGGATATCAATGTTTTGCTCCTGATTTTTGCGATTGGTTAGACTGCGCAGAAAAGATTGGGAAATTTTGATCTCCGGCATACGCCAAATTTTCTGGCTGCTTAGTTTTTAGAGTTTGATTAAATTTGGAGGAAGAAATTAGAAGGATGAACAGTGATACAGAATCTGGAGATCAAAACCGCTACTGTAAAGTCTAATTTGAATGAAAAAGAAGAAGAAATGCATGAATTCTGAGATGTAAATAAATTTCTGTCTCTCTCTGTTTCTTTGATATTTTGAAACTACAATTATATATAATAGCAATTATTTTTTAAACCATTTAAAAATATGCAATTCTTCATGAGACCTAAATTTGT

Coding sequence (CDS)

ATGACGAAGCAGTTGAAAGAGAATCAAGAACCACTAATCTCCGGCGAGTTTCTGGCGGTGGAATCGACGAGGACGACTTGTAATCCTTGTGATTTTCACTCAGCGAAGGCGGACAAGGAAGTGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACAGAGTCGCCGAGATCAGTAACGAAGGTTGCGGACTGGAGGAAGAAATTGGCATATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAGGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATGAATTCGATTGGAGATTGGTGCGATGTTGGATATCAATGTTTTGCTCCTGATTTTTGCGATTGGTTAGACTGCGCAGAAAAGATTGGGAAATTTTGA

Protein sequence

MTKQLKENQEPLISGEFLAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEETESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDVGYQCFAPDFCDWLDCAEKIGKF
Homology
[Close]
BLAST of Carg22898 vs. NCBI nr
Match: XP_022934173.1 (uncharacterized protein LOC111441419 [Cucurbita moschata])

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 96/116 (82.76%), Postives = 101/116 (87.07%), Query Frame = 0 

Query: 1   MTKQLKENQEPLISG----EF--LAVESTRTTCNPCDFHSAKADKEVETDQESIGSSEET 60
           MTKQLKENQEP ISG    EF   A ES R+ CNPCDFHS+K  KE ETDQESIGSSEET
Sbjct: 1   MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEET 60

Query: 61  ESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSIGDWCDV 111
           ESP+SV KVADWRKK+AYVHYQIRRIREEDLHLGEDIGEGFNAKEK+NSIGDWCDV
Sbjct: 61  ESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDV 116

[Close]
BLAST of Carg22898 vs. NCBI nr
Match: KGN59579.1 (hypothetical protein Csa_3G827220 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 6.1e-44
Identity = 96/115 (83.48%), Postives = 102/115 (88.70%), Query Frame = 0 

Query: 1   MTKQLKENQEPLIS-GEFLAV---ESTRTTCNPCDFHSAKADKEVETDQESIGSSEETES 60
           MTKQLKENQEPLIS G+F A    ES R+ CNPCDFH+ K  KEVETDQESIGSSEETES
Sbjct: 23  MTKQLKENQEPLISGGDFSAAEPEESMRSICNPCDFHTPKTYKEVETDQESIGSSEETES 82

Query: 61  PRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSI-GDWCDV 111
           P+SV KVADWRKKLAYVHYQ+RRIREEDLHLGEDIGEGFNAKEK+NSI GDWCDV
Sbjct: 83  PKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDV 137

[Close]
BLAST of Carg22898 vs. NCBI nr
Match: XP_011652239.1 (PREDICTED: uncharacterized protein LOC105435002 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 6.1e-44
Identity = 96/115 (83.48%), Postives = 102/115 (88.70%), Query Frame = 0 

Query: 1   MTKQLKENQEPLIS-GEFLAV---ESTRTTCNPCDFHSAKADKEVETDQESIGSSEETES 60
           MTKQLKENQEPLIS G+F A    ES R+ CNPCDFH+ K  KEVETDQESIGSSEETES
Sbjct: 1   MTKQLKENQEPLISGGDFSAAEPEESMRSICNPCDFHTPKTYKEVETDQESIGSSEETES 60

Query: 61  PRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSI-GDWCDV 111
           P+SV KVADWRKKLAYVHYQ+RRIREEDLHLGEDIGEGFNAKEK+NSI GDWCDV
Sbjct: 61  PKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDV 115

[Close]
BLAST of Carg22898 vs. NCBI nr
Match: XP_008443420.1 (PREDICTED: uncharacterized protein LOC103487011 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 8.0e-44
Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0 

Query: 1   MTKQLKENQEPLIS-GEFLAV---ESTRTTCNPCDFHSAKADKEVETDQESIGSSEETES 60
           MTKQLKENQEPL+S GEF A    ES R  CNPCDFH+ K  KEVETDQESIGSSEETES
Sbjct: 1   MTKQLKENQEPLVSGGEFPATEAEESMRLICNPCDFHTPKTYKEVETDQESIGSSEETES 60

Query: 61  PRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSI-GDWCDV 111
           P+SV KVADWRKKLAYVHYQ+RRIREEDLHLGEDIGEGFNAKEK+NSI GDWCDV
Sbjct: 61  PKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDV 115

[Close]
BLAST of Carg22898 vs. NCBI nr
Match: XP_010661048.1 (PREDICTED: uncharacterized protein LOC100242238 [Vitis vinifera])

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 44  DQESIGSSEETESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMN 103
           DQES GSSEE ESP+SV KV  W K  A VH Q+ RIREEDLHLGEDIGEG +AK+K++
Sbjct: 47  DQESGGSSEEFESPKSVAKVGKWTKNNACVHSQVLRIREEDLHLGEDIGEGLSAKDKVS 105

[Close]
BLAST of Carg22898 vs. TrEMBL
Match: tr|A0A0A0LFA4|A0A0A0LFA4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827220 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.1e-44
Identity = 96/115 (83.48%), Postives = 102/115 (88.70%), Query Frame = 0 

Query: 1   MTKQLKENQEPLIS-GEFLAV---ESTRTTCNPCDFHSAKADKEVETDQESIGSSEETES 60
           MTKQLKENQEPLIS G+F A    ES R+ CNPCDFH+ K  KEVETDQESIGSSEETES
Sbjct: 23  MTKQLKENQEPLISGGDFSAAEPEESMRSICNPCDFHTPKTYKEVETDQESIGSSEETES 82

Query: 61  PRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSI-GDWCDV 111
           P+SV KVADWRKKLAYVHYQ+RRIREEDLHLGEDIGEGFNAKEK+NSI GDWCDV
Sbjct: 83  PKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDV 137

[Close]
BLAST of Carg22898 vs. TrEMBL
Match: tr|A0A1S3B7Y8|A0A1S3B7Y8_CUCME (uncharacterized protein LOC103487011 OS=Cucumis melo OX=3656 GN=LOC103487011 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 5.3e-44
Identity = 96/115 (83.48%), Postives = 101/115 (87.83%), Query Frame = 0 

Query: 1   MTKQLKENQEPLIS-GEFLAV---ESTRTTCNPCDFHSAKADKEVETDQESIGSSEETES 60
           MTKQLKENQEPL+S GEF A    ES R  CNPCDFH+ K  KEVETDQESIGSSEETES
Sbjct: 1   MTKQLKENQEPLVSGGEFPATEAEESMRLICNPCDFHTPKTYKEVETDQESIGSSEETES 60

Query: 61  PRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMNSI-GDWCDV 111
           P+SV KVADWRKKLAYVHYQ+RRIREEDLHLGEDIGEGFNAKEK+NSI GDWCDV
Sbjct: 61  PKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDV 115

[Close]
BLAST of Carg22898 vs. TrEMBL
Match: tr|F6H5R5|F6H5R5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0108g00450 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 44  DQESIGSSEETESPRSVTKVADWRKKLAYVHYQIRRIREEDLHLGEDIGEGFNAKEKMN 103
           DQES GSSEE ESP+SV KV  W K  A VH Q+ RIREEDLHLGEDIGEG +AK+K++
Sbjct: 47  DQESGGSSEEFESPKSVAKVGKWTKNNACVHSQVLRIREEDLHLGEDIGEGLSAKDKVS 105

[Close]
BLAST of Carg22898 vs. TrEMBL
Match: tr|A0A2R6RKB5|A0A2R6RKB5_ACTCH (Plexin-C1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc05738 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.9e-10
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 34  SAKADKEVETDQESIGSSEETESPRSVTKVADWR-KKLAYVHYQIRRIREEDLHLGEDIG 93
           S K   + ETDQESI SSEE ESPRSV K   W  KK+ YVH Q+ +IREED HLGE IG
Sbjct: 24  SRKEFIDPETDQESIESSEEVESPRSVVKFGRWAPKKVVYVHSQVLKIREEDSHLGEGIG 83

Query: 94  EGFNAKEKM 102
           E  +A++K+
Sbjct: 84  ECLSARDKI 92

[Close]
BLAST of Carg22898 vs. TrEMBL
Match: tr|A0A2C9UI11|A0A2C9UI11_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G175100 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 40  EVETDQESIGSSEETESPRSVTKVADWRKKLA---YVHYQIRRIREEDLHLGEDIGEGFN 99
           E E D ES GSSE  ESP+SV K   WR+ ++   +VH Q+ RIREEDLHLGEDIGEG +
Sbjct: 49  EAEMDTESRGSSE--ESPKSVGK---WRRNISNIRFVHNQVLRIREEDLHLGEDIGEGLS 108

Query: 100 AKEKMNSIG 106
           AK+K+ + G
Sbjct: 109 AKDKVMNAG 112

The following BLAST results are available for this feature:
BLAST of Carg22898 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022934173.11.2e-4482.76uncharacterized protein LOC111441419 [Cucurbita moschata][more]
KGN59579.16.1e-4483.48hypothetical protein Csa_3G827220 [Cucumis sativus][more]
XP_011652239.16.1e-4483.48PREDICTED: uncharacterized protein LOC105435002 [Cucumis sativus][more]
XP_008443420.18.0e-4483.48PREDICTED: uncharacterized protein LOC103487011 [Cucumis melo][more]
XP_010661048.11.6e-1269.49PREDICTED: uncharacterized protein LOC100242238 [Vitis vinifera][more]
BLAST of Carg22898 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg22898 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22898 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LFA4|A0A0A0LFA4_CUCSA4.1e-4483.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827220 PE=4 SV=1[more]
tr|A0A1S3B7Y8|A0A1S3B7Y8_CUCME5.3e-4483.48uncharacterized protein LOC103487011 OS=Cucumis melo OX=3656 GN=LOC103487011 PE=... [more]
tr|F6H5R5|F6H5R5_VITVI1.1e-1269.49Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0108g00450 PE=4 SV=... [more]
tr|A0A2R6RKB5|A0A2R6RKB5_ACTCH2.9e-1059.42Plexin-C1 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc0573... [more]
tr|A0A2C9UI11|A0A2C9UI11_MANES5.5e-0957.97Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G175100 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22898-RACarg22898-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..59

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22898Cla017016Watermelon (97103) v1carwmB0201
Carg22898Csa3G827220Cucumber (Chinese Long) v2carcuB0237
Carg22898MELO3C009881Melon (DHL92) v3.5.1carmeB0219
Carg22898ClCG10G014960Watermelon (Charleston Gray)carwcgB0207
Carg22898CSPI03G39110Wild cucumber (PI 183967)carcpiB0243
Carg22898CmaCh11G010320Cucurbita maxima (Rimu)carcmaB0291
Carg22898CmaCh14G005990Cucurbita maxima (Rimu)carcmaB0292
Carg22898CmoCh11G010520Cucurbita moschata (Rifu)carcmoB0297
Carg22898CmoCh14G006070Cucurbita moschata (Rifu)carcmoB0298
Carg22898Lsi03G014720Bottle gourd (USVL1VR-Ls)carlsiB191
Carg22898Cp4.1LG04g01490Cucurbita pepo (Zucchini)carcpeB0302
Carg22898Cp4.1LG03g08050Cucurbita pepo (Zucchini)carcpeB0301
Carg22898CsGy3G036690Cucumber (Gy14) v2carcgybB0226
Carg22898MELO3C009881.2Melon (DHL92) v3.6.1carmedB0225
Carg22898CsaV3_3G041560Cucumber (Chinese Long) v3carcucB0241
Carg22898Cla97C10G197830Watermelon (97103) v2carwmbB0215
Carg22898Bhi11G002509Wax gourdcarwgoB0265
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg22898Carg09780Silver-seed gourdcarcarB250
The following block(s) are covering this gene:
GeneOrganismBlock
Carg22898Wax gourdcarwgoB0266
Carg22898Wax gourdcarwgoB0267
Carg22898Silver-seed gourdcarcarB249
Carg22898Silver-seed gourdcarcarB251
Carg22898Cucumber (Gy14) v2carcgybB0227
Carg22898Cucumber (Gy14) v2carcgybB0228
Carg22898Cucumber (Gy14) v1carcgyB0256
Carg22898Cucumber (Gy14) v1carcgyB0257
Carg22898Cucumber (Gy14) v1carcgyB0258
Carg22898Wild cucumber (PI 183967)carcpiB0244
Carg22898Wild cucumber (PI 183967)carcpiB0245
Carg22898Cucumber (Chinese Long) v2carcuB0238
Carg22898Cucumber (Chinese Long) v2carcuB0239
Carg22898Cucumber (Chinese Long) v3carcucB0242
Carg22898Cucumber (Chinese Long) v3carcucB0243
Carg22898Bottle gourd (USVL1VR-Ls)carlsiB190
Carg22898Melon (DHL92) v3.5.1carmeB0217
Carg22898Melon (DHL92) v3.6.1carmedB0222
Carg22898Melon (DHL92) v3.6.1carmedB0223
Carg22898Watermelon (Charleston Gray)carwcgB0206
Carg22898Watermelon (Charleston Gray)carwcgB0209
Carg22898Watermelon (97103) v1carwmB0200
Carg22898Watermelon (97103) v1carwmB0202
Carg22898Watermelon (97103) v2carwmbB0217