Carg22700 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22700
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_230 : 144901 .. 147719 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTATCGCTCGTCGAGGAGTTTTCTTCTTTCTTCATCGTCACCCATTTCCCTTCAGATCGGCCCTTCAACGCCGATCATCCACGAGATCATGGACGGGCGAATGTTCAGTCGCATCCTCTTTCTTCTCTTCGCGGTTCATTTACTCTTGCCGGCCATCTCCGCTGCCAAATTCGACTATTGCGGTCAGTTTCTCTCTTTCAACCTTCAATTTCTTCACTTTTCTATTTTGTCGGAAATAACCTAAGGACGAGTTCGCCTTCCTTTTGTTGTTTGGTTTCCGATCGTCTTGATTCGAGATAAGAAAGAAATTATCCGAGGAAAAGGAACTTATGACTGTTTTGAATTCTGGATTTTTCTATTTTTTGATTAATTGATGTTCGATTGTGAATTGGAACCAGACAAGAGAGGTAATTATCCTGTGAAGGTCGATGGACTTAAAGTATCTCCTTATCCAGTGAAGGGTGGGAAGCCTGCCACGTTTGCCGTTTCAGCCTCTTCTGGTAAGCTTTGGTCCTCTGCATGCTCCAATTAGTTTTCTTCATTTTAATCTGCTTACTCTCTCTCACCTTACCTTTTGGCTTATGATTCATATTTGGTAAGGACTAAGGGTACCAGAAACCTAATTATGGCTGTTTGTTATGCGCTGTAAATTGTTACTGTAGCTATGGCCTAACACTGATTGGAGAGGTTTCCTCTGGCCCTTCAGCTATGGAATGAAATTGAAGTGTTTGATATGGATCTTAAACTTCTTTTCAAGCTATTTATTTTGTGTTCATCTTTTCATATTTGTGGAAAACCCCAATGACATGTAGTATTCAAGCAATCTTGTTAGATTTTTATAGCAATTTGAAGAAGTCAACTGTAATCCTGGTGCGCAAAAACACACCTTAAGCCTTGCAATGATCTAATCATCTCAACTCAGATTGAGATCCATGTTTGGTCATGCACGAATGCTCTATGCAAATCCGAAAAAGTTATTAACTGGATGAATGGATGTAGTGGAGGTGAAAGTAGGAGCTATTGCACTTTAGCGTGCCTCATGCTTTAGAAAACATTGGTTTATCCTTTGTTTTTCCACACTAATTCTCGGAGCACTTCATTTTGAATTTTTTTGCTCACTCCAATCCTTGTGTTTAGCTGAGGTCTAAATGGTCTCCTCTTAATTGTACTTTCGGTCTTCCTAGTGAAAGCCCATTTGTCAAAGGGTGATTGGTTGACATGTGATGAAGGACCAAGTGACACACTTCGTAGACAATGACAAACTACATGTGAATTGCTTGGAGGGATGCTTACTATGATTTTTGGAAAATTTTAATTGATGATGTACATTGTGTATGATTACAGACTTTGGTGAAGATCCAAATGATGAAACTGAAACTTAAGGGTCTTATGTTATGAGAAATGTTATCAAGTGGTGTGTGCACTTGTGATCACCAGTTTTCCTTCAGAATCTCTCATAAGTGTTTTACTTTTGTGGATAAATTTTTTCTGACATTGTTGTTTAGTTTGCTGGTTTAAAGTTGGATTTCTTAGTCAACCATAGGTATGTTTTTTTCTCCAATGAATGTTCTTGTTCCTCATCATTTTTGCTAAAGAATTAAGCATTGTTCTTGAGACAGACCTTCTGCGTCAAGCCCTCAACTAGAAAATTGGAATATATGTTTCTTACCTTTTGTAAATCCTTTGTGAATCTCCCTGACATCATGTGGAACTTACTGGGAAGTGTTAAGGCAATATGTACTTTCTGACAGCTAAGTTCATTTGCATCTATTCTTATCCTCGTTTAGAAACTCCTCGTGTATGTGCAGCATCCTGATAATTAAACATCTTTATCGAAGGTTTCCCGCAATATTATATATTTTGCACCAGTTTTTAGTTGTTCTAGTAACCATATTTCATTGCACTATAATTTATTCAGAAGACTTCAACGACGATCCAGTAAGACAATCCAGTAAAAGCTAGGTGATATTACATTTTTATTTTAATGAGCAGGTGCAATCCCTCTTATGAAACCAACTGGTCTGATATAGTATTATTTAGTTATTGTTCCTATAACCATCTGATTAGATGCTCTTCTACCATAAATAAAGATGGTGGTAGCCTTATGGGAAATTATAAACACCAACTAGGCTGCCTAACTGGGACGTAGAGGATGGCACTGCTATTGGCATTTCATCTAACAATTATAATTTGTTCCATGCAGAGAAAAATCTCTCCGGTGGAAAGTTCGAGGTCGAGGTTTCTTTATTTGGCGTGCATATACATTCCGAAAGTCATGATCTTTGTGAAGAAACTTCTTGTCCTATTAAACCTGGAAAATTCTCCTTATCGCACTCGCAAAGCTTACCTCCATTTACGCCACCAGTAAGTCTTGTTTCGTAGATTAATGCTCTCTCTTTACCAACATGCCATGTTGCTTTACAAGTTTCTTTGATCACCCATCTTTGTTCCCAATTTTATTCTGAATCTTGCTTTGCTAAAGTTGCCTGAATCTTGAAATTTATACTACAGGGTATGTATTCTGTGAAAATAATATTGAAAGATACGGATAAGGAGCAGTTGACTTGCATCAGCTTCAAGCTCAAAATTGTTTTTGGTGACGAGAAATCAGCAATACCTGAAGAATCCTTGGTTGCTGAGAGTTGAAAATTGCCAGTTGAAGTTAATGTTCCTGCGACTTTCTCTGTTTTTCAGCTTCAGTATGTGTAATATTTCGACTACTGCTACTACAAGGATTTGACCCGACTCGTGTTGTTGTTTGTGTGTTTATAAAATCTTCTGGACAAATGCAAGTTCTTCAATATGCTAGCTTTCTTC

mRNA sequence

TTCTATCGCTCGTCGAGGAGTTTTCTTCTTTCTTCATCGTCACCCATTTCCCTTCAGATCGGCCCTTCAACGCCGATCATCCACGAGATCATGGACGGGCGAATGTTCAGTCGCATCCTCTTTCTTCTCTTCGCGGTTCATTTACTCTTGCCGGCCATCTCCGCTGCCAAATTCGACTATTGCGACAAGAGAGGTAATTATCCTGTGAAGGTCGATGGACTTAAAGTATCTCCTTATCCAGTGAAGGGTGGGAAGCCTGCCACGTTTGCCGTTTCAGCCTCTTCTGAGAAAAATCTCTCCGGTGGAAAGTTCGAGGTCGAGGTTTCTTTATTTGGCGTGCATATACATTCCGAAAGTCATGATCTTTGTGAAGAAACTTCTTGTCCTATTAAACCTGGAAAATTCTCCTTATCGCACTCGCAAAGCTTACCTCCATTTACGCCACCAGGTATGTATTCTGTGAAAATAATATTGAAAGATACGGATAAGGAGCAGTTGACTTGCATCAGCTTCAAGCTCAAAATTGTTTTTGGTGACGAGAAATCAGCAATACCTGAAGAATCCTTGGTTGCTGAGAGTTGAAAATTGCCAGTTGAAGTTAATGTTCCTGCGACTTTCTCTGTTTTTCAGCTTCAGTATGTGTAATATTTCGACTACTGCTACTACAAGGATTTGACCCGACTCGTGTTGTTGTTTGTGTGTTTATAAAATCTTCTGGACAAATGCAAGTTCTTCAATATGCTAGCTTTCTTC

Coding sequence (CDS)

ATGGACGGGCGAATGTTCAGTCGCATCCTCTTTCTTCTCTTCGCGGTTCATTTACTCTTGCCGGCCATCTCCGCTGCCAAATTCGACTATTGCGACAAGAGAGGTAATTATCCTGTGAAGGTCGATGGACTTAAAGTATCTCCTTATCCAGTGAAGGGTGGGAAGCCTGCCACGTTTGCCGTTTCAGCCTCTTCTGAGAAAAATCTCTCCGGTGGAAAGTTCGAGGTCGAGGTTTCTTTATTTGGCGTGCATATACATTCCGAAAGTCATGATCTTTGTGAAGAAACTTCTTGTCCTATTAAACCTGGAAAATTCTCCTTATCGCACTCGCAAAGCTTACCTCCATTTACGCCACCAGGTATGTATTCTGTGAAAATAATATTGAAAGATACGGATAAGGAGCAGTTGACTTGCATCAGCTTCAAGCTCAAAATTGTTTTTGGTGACGAGAAATCAGCAATACCTGAAGAATCCTTGGTTGCTGAGAGTTGA

Protein sequence

MDGRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES

Homology

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BLAST of Carg22700 vs. NCBI nr
Match: XP_023520653.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.4 bits (838), Expect = 2.8e-86
Identity = 162/163 (99.39%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MDGRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60
           MDGRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA
Sbjct: 1   MDGRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60

Query: 61  VSASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG 120
           VSAS+EKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG
Sbjct: 61  VSASTEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG 120

Query: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 164
           MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES
Sbjct: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

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BLAST of Carg22700 vs. NCBI nr
Match: XP_023001324.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 3.4e-84
Identity = 158/163 (96.93%), Postives = 162/163 (99.39%), Query Frame = 0


Query: 1   MDGRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60
           MDGR+FSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA
Sbjct: 1   MDGRIFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60

Query: 61  VSASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG 120
           VSAS+EKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG
Sbjct: 61  VSASTEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG 120

Query: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 164
           MYSVKIILKD +KEQLTCISFKLKIVFGDEKSAIP+ESLVAES
Sbjct: 121 MYSVKIILKDMEKEQLTCISFKLKIVFGDEKSAIPKESLVAES 163

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BLAST of Carg22700 vs. NCBI nr
Match: XP_022933704.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucurbita moschata])

HSP 1 Score: 319.3 bits (817), Expect = 7.5e-84
Identity = 158/163 (96.93%), Postives = 160/163 (98.16%), Query Frame = 0


Query: 1   MDGRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60
           MDGRMFSRILFLLFAVHLLLPAI AAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA
Sbjct: 1   MDGRMFSRILFLLFAVHLLLPAIFAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60

Query: 61  VSASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG 120
           VSAS+EKNLSGGKFEVEVSLFGV IHSESHDLCE TSCP+KPGKFSLSHSQSLPPFTPPG
Sbjct: 61  VSASTEKNLSGGKFEVEVSLFGVRIHSESHDLCEATSCPVKPGKFSLSHSQSLPPFTPPG 120

Query: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 164
           MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES
Sbjct: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

[Close]

BLAST of Carg22700 vs. NCBI nr
Match: XP_008443632.1 (PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 6.4e-67
Identity = 130/161 (80.75%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 3   GRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVS 62
           GR F+RI+FLLF V LL P I AAKF+YCD+RGNYPVKVD L+VSP PVK G+PATF VS
Sbjct: 4   GRSFNRIIFLLFTVLLLFPVIFAAKFEYCDRRGNYPVKVDELEVSPDPVKSGQPATFTVS 63

Query: 63  ASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMY 122
           AS+EKNLSGGKF VEVSLFG+HIHSESHDLCEETSCPI PGKFSLSHSQSLPPFTPPG Y
Sbjct: 64  ASTEKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGSY 123

Query: 123 SVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 164
            VKIIL+D+  +QLTCISFKLKIVFGD +SAI E+SLVAES
Sbjct: 124 VVKIILRDSKNQQLTCISFKLKIVFGDAESAISEKSLVAES 164

[Close]

BLAST of Carg22700 vs. NCBI nr
Match: XP_004139084.1 (PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucumis sativus] >KGN66610.1 hypothetical protein Csa_1G641040 [Cucumis sativus])

HSP 1 Score: 259.2 bits (661), Expect = 9.2e-66
Identity = 128/161 (79.50%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 3   GRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVS 62
           GR F+RI+FLLFAV LLLP I AAKF+YCD+RG+YPVKV  L+VSP PVK G+PATF VS
Sbjct: 4   GRSFNRIIFLLFAVLLLLPVIFAAKFEYCDRRGDYPVKVGELEVSPDPVKSGQPATFTVS 63

Query: 63  ASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMY 122
           AS+EKNLSGGKF VEVSLFG+HIHSESHDLCEETSCPI PGKFSLSHSQSLPPFTPPG Y
Sbjct: 64  ASTEKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGSY 123

Query: 123 SVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 164
           +VKIIL+D+  +QLTCI+FKLKIVFGD +SAI E+ LVAES
Sbjct: 124 TVKIILRDSKNQQLTCINFKLKIVFGDAESAISEKYLVAES 164

[Close]

BLAST of Carg22700 vs. TAIR10
Match: AT3G44100.1 (MD-2-related lipid recognition domain-containing protein)

HSP 1 Score: 148.3 bits (373), Expect = 4.2e-36
Identity = 72/140 (51.43%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 9   ILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASSEKN 68
           +L LL +V   LPA+ A  F YCDKR + PVKV G+K+SP PV  G  ATF +  S+ ++
Sbjct: 9   LLLLLLSV-FFLPALHATSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGED 68

Query: 69  LSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMYSVKIIL 128
           +SGGK  + V   G+ +H+E+HDLC+ET+CP+ PG F LSHSQ+LP  TPPG Y++K+ +
Sbjct: 69  ISGGKVVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTI 128

Query: 129 KDTDKEQLTCISFKLKIVFG 149
            D +  +LTCISFK KI  G
Sbjct: 129 NDKNGGRLTCISFKFKITVG 146

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BLAST of Carg22700 vs. TAIR10
Match: AT3G11780.2 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32
Identity = 66/149 (44.30%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 18  LLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASSEKNLSGGKFEVE 77
           L+   ++A    YCD    Y VKV G+ ++PYP+  G+PATF +SA+++  +S GK  +E
Sbjct: 17  LVSTIVAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISANTDTEISSGKLVIE 76

Query: 78  VSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPP------------------ 137
           VS FG HIHSE+HDLC+ETSCP+  G F ++HSQ LP +TPP                  
Sbjct: 77  VSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRFNLVSIAYYEFHVE 136

Query: 138 GMYSVKIILKDTDKEQLTCISFKLKIVFG 149
           G YS+K+ + D  K++LTCI F   I FG
Sbjct: 137 GSYSLKMKMLDGRKKELTCIKFSFDIGFG 165

[Close]

BLAST of Carg22700 vs. TAIR10
Match: AT5G06480.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-32
Identity = 65/142 (45.77%), Postives = 93/142 (65.49%), Query Frame = 0


Query: 4   RMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSA 63
           R+F+ +      + LL+  I A    YC++   Y VKV  + +SP P+  G+PATF +SA
Sbjct: 3   RIFAILPLAAVFLLLLVSPIVAIDVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISA 62

Query: 64  SSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMYS 123
           ++ + +S GK  +EVS FG H+HSE+HDLC ETSCPI+ G F ++HSQ LP +TPPG Y 
Sbjct: 63  NTGREISFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYL 122

Query: 124 VKIILKDTDKEQLTCISFKLKI 146
           +K+ + D  K++LTCI F   I
Sbjct: 123 LKMKMLDAKKKELTCIKFSFDI 144

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BLAST of Carg22700 vs. TAIR10
Match: AT2G16005.1 (MD-2-related lipid recognition domain-containing protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 7   SRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASSE 66
           +++L LL       PA+   KF  CD    YP+KV  +++SP PVK        ++  + 
Sbjct: 6   TQLLLLLLVSLFFSPALCGPKFQTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGVTN 65

Query: 67  KNLSGG---KFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMYS 126
           K +S G     ++ V +F V   ++S+ LC+ T+CP+ PG   L+      P        
Sbjct: 66  KEISDGVTVNLKLAVGMFPV--STKSYSLCDITACPVAPGPIVLTLPNIFTPREKRTAIG 125

Query: 127 VKIILKDTD---KEQLTCISFKLKI 146
             II+  TD   KE + CI F +K+
Sbjct: 126 YTIIISITDKPLKESMMCILFVVKL 148

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BLAST of Carg22700 vs. Swiss-Prot
Match: sp|Q9AST8|ROSY1_ARATH (MD-2-related lipid-recognition protein ROSY1 OS=Arabidopsis thaliana OX=3702 GN=ROSY1 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 7   SRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASSE 66
           +++L LL       PA+   KF  CD    YP+KV  +++SP PVK        ++  + 
Sbjct: 6   TQLLLLLLVSLFFSPALCGPKFQTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGVTN 65

Query: 67  KNLSGG---KFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMYS 126
           K +S G     ++ V +F V   ++S+ LC+ T+CP+ PG   L+      P        
Sbjct: 66  KEISDGVTVNLKLAVGMFPV--STKSYSLCDITACPVAPGPIVLTLPNIFTPREKRTAIG 125

Query: 127 VKIILKDTD---KEQLTCISFKLKI 146
             II+  TD   KE + CI F +K+
Sbjct: 126 YTIIISITDKPLKESMMCILFVVKL 148

[Close]

BLAST of Carg22700 vs. Swiss-Prot
Match: sp|O94183|NPC2_ASPOR (Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pltp PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 37/119 (31.09%), Postives = 60/119 (50.42%), Query Frame = 0


Query: 29  DYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASS---EKNLSGGKFEVEVSLFGVHI 88
           +YC+      + +  + +SP P   GK  T A++AS    EK   G    +EV    + +
Sbjct: 48  EYCNDPSGDILDIKQVDLSPNPPLPGK--TLAITASGTLREKIEDGAYVLLEVKYGLITL 107

Query: 89  HSESHDLCE-----ETSCPIKPGKFSLSHSQSLPPFTPPGMYSVKIILKDTDKEQLTCI 140
             ++ DLCE     E  CP+ PG  +L+    LP   PPG Y+V+  + ++D E +TC+
Sbjct: 108 VRQTADLCEQLVNVELKCPLGPGDMTLTKQVDLPKQIPPGKYTVQADVFNSDGEHITCL 164

[Close]

BLAST of Carg22700 vs. TrEMBL
Match: tr|A0A1S3B808|A0A1S3B808_CUCME (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cucumis melo OX=3656 GN=LOC103487184 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.2e-67
Identity = 130/161 (80.75%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 3   GRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVS 62
           GR F+RI+FLLF V LL P I AAKF+YCD+RGNYPVKVD L+VSP PVK G+PATF VS
Sbjct: 4   GRSFNRIIFLLFTVLLLFPVIFAAKFEYCDRRGNYPVKVDELEVSPDPVKSGQPATFTVS 63

Query: 63  ASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMY 122
           AS+EKNLSGGKF VEVSLFG+HIHSESHDLCEETSCPI PGKFSLSHSQSLPPFTPPG Y
Sbjct: 64  ASTEKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGSY 123

Query: 123 SVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 164
            VKIIL+D+  +QLTCISFKLKIVFGD +SAI E+SLVAES
Sbjct: 124 VVKIILRDSKNQQLTCISFKLKIVFGDAESAISEKSLVAES 164

[Close]

BLAST of Carg22700 vs. TrEMBL
Match: tr|A0A0A0LXM9|A0A0A0LXM9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G641040 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 6.1e-66
Identity = 128/161 (79.50%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 3   GRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVS 62
           GR F+RI+FLLFAV LLLP I AAKF+YCD+RG+YPVKV  L+VSP PVK G+PATF VS
Sbjct: 4   GRSFNRIIFLLFAVLLLLPVIFAAKFEYCDRRGDYPVKVGELEVSPDPVKSGQPATFTVS 63

Query: 63  ASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMY 122
           AS+EKNLSGGKF VEVSLFG+HIHSESHDLCEETSCPI PGKFSLSHSQSLPPFTPPG Y
Sbjct: 64  ASTEKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGSY 123

Query: 123 SVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 164
           +VKIIL+D+  +QLTCI+FKLKIVFGD +SAI E+ LVAES
Sbjct: 124 TVKIILRDSKNQQLTCINFKLKIVFGDAESAISEKYLVAES 164

[Close]

BLAST of Carg22700 vs. TrEMBL
Match: tr|D7TCN7|D7TCN7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g01240 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-41
Identity = 83/139 (59.71%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 10  LFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASSEKNL 69
           L L FAV LL+P+I A    YCDK+G Y VKV  +++SP P+  GKPATF +SAS+ + +
Sbjct: 10  LLLFFAVCLLVPSIQAKSVSYCDKKGQYAVKVQDIQISPDPIIPGKPATFTISASAGEGI 69

Query: 70  SGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMYSVKIILK 129
           SGGK  +EVSLFGVH+H+ESH+LCEETSCPI  G F LSHSQ LP FTPPG Y++K+ ++
Sbjct: 70  SGGKVVIEVSLFGVHVHTESHNLCEETSCPISGGNFELSHSQMLPGFTPPGSYTLKMKME 129

Query: 130 DTDKEQLTCISFKLKIVFG 149
           D  K QLTCI+F   I FG
Sbjct: 130 DESKHQLTCITFNFNIGFG 148

[Close]

BLAST of Carg22700 vs. TrEMBL
Match: tr|A5ALT4|A5ALT4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030670 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.3e-41
Identity = 83/139 (59.71%), Postives = 104/139 (74.82%), Query Frame = 0


Query: 10  LFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASSEKNL 69
           L L FAV LL+P+I A    YCDK+G Y VKV  +++SP P+  GKPATF +SAS+ + +
Sbjct: 10  LLLFFAVCLLVPSIQAKSVSYCDKKGEYAVKVQDIQISPDPIIPGKPATFTISASAGEXI 69

Query: 70  SGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMYSVKIILK 129
           SGGK  +EVSLFGVH+H+ESH+LCEETSCPI  G F LSHSQ LP FTPPG Y++K+ ++
Sbjct: 70  SGGKVVIEVSLFGVHVHTESHNLCEETSCPISGGNFELSHSQMLPGFTPPGSYTLKMKME 129

Query: 130 DTDKEQLTCISFKLKIVFG 149
           D  K QLTCI+F   I FG
Sbjct: 130 DESKHQLTCITFNFNIGFG 148

[Close]

BLAST of Carg22700 vs. TrEMBL
Match: tr|A0A0K9S0A9|A0A0K9S0A9_SPIOL (Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_009080 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 78/148 (52.70%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 7   SRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFAVSASSE 66
           S I  LLF++ LL P   A    YCDK+ +Y VKV G+++SP PV GG+PATF++SAS+ 
Sbjct: 6   STITLLLFSLFLLSPPAYATDIRYCDKKADYEVKVSGVEISPSPVTGGQPATFSISASTG 65

Query: 67  KNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPGMYSVKI 126
           K +SGG+ +++V+ FG H+HSE+HDLC ETSCP+  G F +SHSQ LP FTPPG Y++K+
Sbjct: 66  KAISGGRLDLDVAYFGWHVHSETHDLCTETSCPVSTGDFMISHSQVLPEFTPPGSYTIKM 125

Query: 127 ILKDTDKEQLTCISFKLKIVFGDEKSAI 155
            + D DK QL+CI+F   + FG   +AI
Sbjct: 126 KILDADKRQLSCIAFDFSVGFGSSVAAI 153

The following BLAST results are available for this feature:

BLAST of Carg22700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520653.1	2.8e-86	99.39	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
XP_023001324.1	3.4e-84	96.93	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
XP_022933704.1	7.5e-84	96.93	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
XP_008443632.1	6.4e-67	80.75	PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein D...	[more]
XP_004139084.1	9.2e-66	79.50	PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein D...	[more]

BLAST of Carg22700 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44100.1	4.2e-36	51.43	MD-2-related lipid recognition domain-containing protein	[more]
AT3G11780.2	1.3e-32	44.30	MD-2-related lipid recognition domain-containing protein / ML domain-containing ...	[more]
AT5G06480.1	1.3e-32	45.77	Immunoglobulin E-set superfamily protein	[more]
AT2G16005.1	1.1e-12	30.34	MD-2-related lipid recognition domain-containing protein	[more]

BLAST of Carg22700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9AST8\|ROSY1_ARATH	2.0e-11	30.34	MD-2-related lipid-recognition protein ROSY1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|O94183\|NPC2_ASPOR	2.3e-07	31.09	Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Aspergillus oryzae...	[more]

BLAST of Carg22700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B808\|A0A1S3B808_CUCME	4.2e-67	80.75	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
tr\|A0A0A0LXM9\|A0A0A0LXM9_CUCSA	6.1e-66	79.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G641040 PE=4 SV=1	[more]
tr\|D7TCN7\|D7TCN7_VITVI	1.8e-41	59.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g01240 PE=4 SV=...	[more]
tr\|A5ALT4\|A5ALT4_VITVI	2.3e-41	59.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030670 PE=4 SV=1	[more]
tr\|A0A0K9S0A9\|A0A0K9S0A9_SPIOL	1.3e-39	52.70	Uncharacterized protein OS=Spinacia oleracea OX=3562 GN=SOVF_009080 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0032366	intracellular sterol transport

Vocabulary: **INTERPRO**
Term	Definition
IPR014756	Ig_E-set
IPR033917	ML_PG-PI_TP
IPR003172	ML_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032366	intracellular sterol transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22700-RA	Carg22700-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003172	MD-2-related lipid-recognition domain	SMART	SM00737	pgtp_13	coord: 28..143 e-value: 7.3E-32 score: 121.8
IPR003172	MD-2-related lipid-recognition domain	PFAM	PF02221	E1_DerP2_DerF2	coord: 27..145 e-value: 4.2E-23 score: 82.1
None	No IPR available	GENE3D	G3DSA:2.60.40.770		coord: 25..147 e-value: 3.9E-11 score: 45.2
None	No IPR available	PANTHER	PTHR11306:SF27	MD-2-RELATED LIPID RECOGNITION DOMAIN-CONTAINING PROTEIN	coord: 10..150
None	No IPR available	PANTHER	PTHR11306	NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED	coord: 10..150
IPR033917	ML domain, phosphatidylinositol/phosphatidylglycerol transfer protein	CDD	cd00917	PG-PI_TP	coord: 28..142 e-value: 1.33557E-38 score: 128.597
IPR014756	Immunoglobulin E-set	SUPERFAMILY	SSF81296	E set domains	coord: 25..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22700	Cla001777	Watermelon (97103) v1	carwmB0532
Carg22700	Csa1G641040	Cucumber (Chinese Long) v2	carcuB0565
Carg22700	MELO3C009994	Melon (DHL92) v3.5.1	carmeB0540
Carg22700	ClCG03G011930	Watermelon (Charleston Gray)	carwcgB0521
Carg22700	CSPI01G31650	Wild cucumber (PI 183967)	carcpiB0571
Carg22700	Cucsa.356090	Cucumber (Gy14) v1	carcgyB0613
Carg22700	CmaCh11G009130	Cucurbita maxima (Rimu)	carcmaB0749
Carg22700	CmoCh11G009320	Cucurbita moschata (Rifu)	carcmoB0727
Carg22700	CsGy1G030770	Cucumber (Gy14) v2	carcgybB0542
Carg22700	MELO3C009994.2	Melon (DHL92) v3.6.1	carmedB0545
Carg22700	CsaV3_1G044000	Cucumber (Chinese Long) v3	carcucB0573
Carg22700	Cla97C03G062130	Watermelon (97103) v2	carwmbB0562
Carg22700	Bhi02G001164	Wax gourd	carwgoB0645

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22700	Silver-seed gourd	carcarB502
Carg22700	Cucurbita maxima (Rimu)	carcmaB0748
Carg22700	Cucurbita moschata (Rifu)	carcmoB0726
Carg22700	Cucurbita pepo (Zucchini)	carcpeB0756
Carg22700	Cucurbita pepo (Zucchini)	carcpeB0757
Carg22700	Bottle gourd (USVL1VR-Ls)	carlsiB485
Carg22700	Melon (DHL92) v3.5.1	carmeB0541
Carg22700	Melon (DHL92) v3.6.1	carmedB0546