Carg22495 (gene) Silver-seed gourd

Overview
NameCarg22495
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUbiquitin carboxyl-terminal hydrolase
LocationCucurbita_argyrosperma_scaffold_156 : 166873 .. 167485 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCAACCGGAGCAGCACCCGCCAGTTCGCCGTCGGAACCAGAGTGCTGCATGTGCGGAGATTTCGGCTTCTCCGACGAGCTTTTCCGGTGCAAAATCTGCCAATTCAGATCCCAACACAGGCAATTTCCTTCAAATTCTTTGTGTTTCTTCTTAATTGGGTTCATGATTTTAATACCCATTTCTTGTTCTTGCTGTTCTTCTCAGGTACTGCAGCAATTTGTACCCAAAAGCCGATTGTTACACAATATGCAATTGGTGTCTAACTCAAAAGGAGGAATCCAAAGCCAAATCCCCAAATTCTTCCAATTCTTCTTCCTTAACCACTCGAGATGATCACTCCTCGATCAAAAACCCCCGAAACAAGGATCAAATTCGCACTTTTCTACCCCTACAAACCAGACCCATCAAAAAACAGAGGTCGCCGGAAGCTTCTGAACGTCCACAACCACCGCCGCCTCCGCCGCCTCGGAGAAAACCAATCGCCGTGGAGGACAATCTCCGGCGGACGAGATCGGAGGAGATTTCTCACCGGAGTGGAATCCAACGGCCGGTGATTTTCCGGAACAAGGTGAGAAGGTACAAACTTCTTGACGAGGTTTCCAGCTGA

mRNA sequence

ATGACATCAACCGGAGCAGCACCCGCCAGTTCGCCGTCGGAACCAGAGTGCTGCATGTGCGGAGATTTCGGCTTCTCCGACGAGCTTTTCCGGTACTGCAGCAATTTGTACCCAAAAGCCGATTGTTACACAATATGCAATTGGTGTCTAACTCAAAAGGAGGAATCCAAAGCCAAATCCCCAAATTCTTCCAATTCTTCTTCCTTAACCACTCGAGATGATCACTCCTCGATCAAAAACCCCCGAAACAAGGATCAAATTCGCACTTTTCTACCCCTACAAACCAGACCCATCAAAAAACAGAGGTCGCCGGAAGCTTCTGAACGTCCACAACCACCGCCGCCTCCGCCGCCTCGGAGAAAACCAATCGCCGTGGAGGACAATCTCCGGCGGACGAGATCGGAGGAGATTTCTCACCGGAGTGGAATCCAACGGCCGGTGATTTTCCGGAACAAGGTGAGAAGGTACAAACTTCTTGACGAGGTTTCCAGCTGA

Coding sequence (CDS)

ATGACATCAACCGGAGCAGCACCCGCCAGTTCGCCGTCGGAACCAGAGTGCTGCATGTGCGGAGATTTCGGCTTCTCCGACGAGCTTTTCCGGTACTGCAGCAATTTGTACCCAAAAGCCGATTGTTACACAATATGCAATTGGTGTCTAACTCAAAAGGAGGAATCCAAAGCCAAATCCCCAAATTCTTCCAATTCTTCTTCCTTAACCACTCGAGATGATCACTCCTCGATCAAAAACCCCCGAAACAAGGATCAAATTCGCACTTTTCTACCCCTACAAACCAGACCCATCAAAAAACAGAGGTCGCCGGAAGCTTCTGAACGTCCACAACCACCGCCGCCTCCGCCGCCTCGGAGAAAACCAATCGCCGTGGAGGACAATCTCCGGCGGACGAGATCGGAGGAGATTTCTCACCGGAGTGGAATCCAACGGCCGGTGATTTTCCGGAACAAGGTGAGAAGGTACAAACTTCTTGACGAGGTTTCCAGCTGA

Protein sequence

MTSTGAAPASSPSEPECCMCGDFGFSDELFRYCSNLYPKADCYTICNWCLTQKEESKAKSPNSSNSSSLTTRDDHSSIKNPRNKDQIRTFLPLQTRPIKKQRSPEASERPQPPPPPPPRRKPIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS
Homology
[Close]
BLAST of Carg22495 vs. NCBI nr
Match: XP_022951049.1 (uncharacterized protein LOC111454013 [Cucurbita moschata])

HSP 1 Score: 280.4 bits (716), Expect = 3.9e-72
Identity = 161/175 (92.00%), Postives = 161/175 (92.00%), Query Frame = 0 

Query: 1   MTSTGAAPASSPSEPECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICNWC 60
           MTSTGAAPASSPSE ECCMCGDFGFSDELF           RYCSNLYPKADCY ICNWC
Sbjct: 1   MTSTGAAPASSPSEAECCMCGDFGFSDELFRCKICQFRSQHRYCSNLYPKADCYRICNWC 60

Query: 61  LTQKEESKAKSPNSSNSSSLTTRDDHSSIKNPRNKDQIRTFLPLQTRPIKKQRSPEASEX 120
           LTQKEESKAKSPNSSNSSSLTTRDDHSSIK PRNKDQIRTFLPLQTRPIKKQRSPEASEX
Sbjct: 61  LTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTRPIKKQRSPEASEX 120

Query: 121 XXXXXXXXXXXXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 165
           XXXXXXXXXXXXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS
Sbjct: 121 XXXXXXXXXXXXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 175

[Close]
BLAST of Carg22495 vs. NCBI nr
Match: XP_023537720.1 (uncharacterized protein LOC111798664 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 1.3e-70
Identity = 160/176 (90.91%), Postives = 161/176 (91.48%), Query Frame = 0 

Query: 1   MTSTGAAPASSPSEPECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICNWC 60
           MTSTGAAPASSPSEPECCMCGDFGFSDELF           RYCSNLYPKADCY ICNWC
Sbjct: 1   MTSTGAAPASSPSEPECCMCGDFGFSDELFRCKICQFRSQHRYCSNLYPKADCYRICNWC 60

Query: 61  LTQKEESKAKSPNSSNSSSLTTRDDHSSIKNPRNKDQIRTFLPLQTRPIKKQRSPEASE- 120
           LTQKEESKAKSPNSSNSSSLTTRDDHSSIK PRNKDQIRTFLPLQTRPIKKQRSPEASE 
Sbjct: 61  LTQKEESKAKSPNSSNSSSLTTRDDHSSIKTPRNKDQIRTFLPLQTRPIKKQRSPEASEX 120

Query: 121 XXXXXXXXXXXXXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 165
           XXXXXXXXXXXXXX AVE+NLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS
Sbjct: 121 XXXXXXXXXXXXXXXAVEENLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 176

[Close]
BLAST of Carg22495 vs. NCBI nr
Match: XP_023002810.1 (uncharacterized protein LOC111496564 [Cucurbita maxima])

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 156/176 (88.64%), Postives = 159/176 (90.34%), Query Frame = 0 

Query: 1   MTSTGAAPASSPSEPECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICNWC 60
           MTSTGAA ASSPSE ECCMCGDFGFSDELF           RYCSNLYPKADCY ICNWC
Sbjct: 1   MTSTGAA-ASSPSEAECCMCGDFGFSDELFRCKICQFRSQHRYCSNLYPKADCYRICNWC 60

Query: 61  LTQKEESKAKSPNSSNSSSLTTRDDHSSIKNPRNKDQIRTFLPLQTRPIKKQRSPEASE- 120
           LTQKEESKAKSPNSSNSSSL+TRDD+SSIK PRNKDQIRTFLPLQTRPIKKQRSPEASE 
Sbjct: 61  LTQKEESKAKSPNSSNSSSLSTRDDYSSIKTPRNKDQIRTFLPLQTRPIKKQRSPEASEX 120

Query: 121 XXXXXXXXXXXXXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 165
           XXXXXXXXXXXXXX AVE+NLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS
Sbjct: 121 XXXXXXXXXXXXXXXAVEENLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 175

[Close]
BLAST of Carg22495 vs. NCBI nr
Match: XP_022132041.1 (uncharacterized protein LOC111005007 [Momordica charantia])

HSP 1 Score: 190.3 bits (482), Expect = 5.3e-45
Identity = 131/189 (69.31%), Postives = 137/189 (72.49%), Query Frame = 0 

Query: 1   MTSTGAAPASSPSE--PECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICN 60
           MTS GAA   S +    ECCMCGDFGFS ELF           RYCSNLYPKA+CY ICN
Sbjct: 1   MTSNGAATTKSEASLPLECCMCGDFGFSYELFQCKICQYRSQHRYCSNLYPKAECYRICN 60

Query: 61  WCLTQKEESKAKSPNSS---------NSSSLTTRDDHSSIKNPR--NKDQIRTFLPLQTR 120
           WCL+QKEESKAKSPNSS         NSS    RDD+SSIK PR  NKDQIRTF   + R
Sbjct: 61  WCLSQKEESKAKSPNSSXXXXXXXXXNSSG---RDDYSSIKKPRNSNKDQIRTFQSQENR 120

Query: 121 PIKKQRSPE-ASEXXXXXXXXXXXXXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRR 165
           PIKKQRSPE    XXXXXXXXXXXXXX      LRRTRSEEISHR+GIQRPVIFRNKVRR
Sbjct: 121 PIKKQRSPEXXXXXXXXXXXXXXXXXXXXXXXXLRRTRSEEISHRTGIQRPVIFRNKVRR 180

[Close]
BLAST of Carg22495 vs. NCBI nr
Match: XP_004152611.1 (PREDICTED: uncharacterized protein LOC101216451 [Cucumis sativus] >KGN62733.1 hypothetical protein Csa_2G369840 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 4.2e-34
Identity = 104/165 (63.03%), Postives = 111/165 (67.27%), Query Frame = 0 

Query: 11  SPSEPECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICNWCLTQKEESKAK 70
           S S+ ECCMCGDFGFS ELF           RYCSNLYPKADCY ICNWCLT  +ES  K
Sbjct: 4   SKSQSECCMCGDFGFSFELFHCKICQFRSQHRYCSNLYPKADCYRICNWCLTLNQESNPK 63

Query: 71  SPNSSNSSSLTTRDDHSSIKNPRNKDQIRTFLPLQTRPIKKQRSPEASEXXXXXXXXXXX 130
           SPNSS           SSI N  N DQ   F     +PIK         XXXXXXXXXXX
Sbjct: 64  SPNSS-----------SSIIN--NNDQFPNFRSQLNKPIKXXXXXXXXXXXXXXXXXXXX 123

Query: 131 XXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 165
           XXX  V++ LRRTRSEEISHR+GI+RPVIFRNKVRRYKLLDEVSS
Sbjct: 124 XXXXXVDEKLRRTRSEEISHRTGIKRPVIFRNKVRRYKLLDEVSS 155

[Close]
BLAST of Carg22495 vs. TAIR10
Match: AT3G60520.1 (unknown protein)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-05
Identity = 29/74 (39.19%), Postives = 39/74 (52.70%), Query Frame = 0 

Query: 17 CCMCGDFGFSDELFR-----------YCSNLY-PKADCYTICNWCLTQ-KEESKAKSPNS 76
          CCMCGD GF D+LF            YCS+ Y  +AD   IC+WC  + K  + AK   +
Sbjct: 9  CCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAKSRTGAKHGVN 68

Query: 77 SNSSSLTTRDDHSS 78
            SS  + R ++SS
Sbjct: 69 GGSSKRSYRSEYSS 82

[Close]
BLAST of Carg22495 vs. TAIR10
Match: AT1G02070.1 (unknown protein)

HSP 1 Score: 42.7 bits (99), Expect = 2.5e-04
Identity = 35/101 (34.65%), Postives = 50/101 (49.50%), Query Frame = 0 

Query: 14  EPECCMCGDFGFSDELF-----------RYCSNLYPK-ADCYTICNWCLTQKEE------ 73
           E  CCMCGD GFSD+LF            YCSN Y + A+   IC+WC +   +      
Sbjct: 2   ERVCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDRKLSNVAR 61

Query: 74  ---SKAKSPNSS--NSSSLTTRDDHS---SIKNPRNK-DQI 88
              S +K P+SS    +  + R ++S    IK+  N+ DQ+
Sbjct: 62  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQV 102

[Close]
BLAST of Carg22495 vs. TrEMBL
Match: tr|A0A0A0LLR8|A0A0A0LLR8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369840 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.8e-34
Identity = 104/165 (63.03%), Postives = 111/165 (67.27%), Query Frame = 0 

Query: 11  SPSEPECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICNWCLTQKEESKAK 70
           S S+ ECCMCGDFGFS ELF           RYCSNLYPKADCY ICNWCLT  +ES  K
Sbjct: 4   SKSQSECCMCGDFGFSFELFHCKICQFRSQHRYCSNLYPKADCYRICNWCLTLNQESNPK 63

Query: 71  SPNSSNSSSLTTRDDHSSIKNPRNKDQIRTFLPLQTRPIKKQRSPEASEXXXXXXXXXXX 130
           SPNSS           SSI N  N DQ   F     +PIK         XXXXXXXXXXX
Sbjct: 64  SPNSS-----------SSIIN--NNDQFPNFRSQLNKPIKXXXXXXXXXXXXXXXXXXXX 123

Query: 131 XXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 165
           XXX  V++ LRRTRSEEISHR+GI+RPVIFRNKVRRYKLLDEVSS
Sbjct: 124 XXXXXVDEKLRRTRSEEISHRTGIKRPVIFRNKVRRYKLLDEVSS 155

[Close]
BLAST of Carg22495 vs. TrEMBL
Match: tr|A0A1S3BCA2|A0A1S3BCA2_CUCME (uncharacterized protein LOC103488103 OS=Cucumis melo OX=3656 GN=LOC103488103 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.9e-31
Identity = 99/166 (59.64%), Postives = 106/166 (63.86%), Query Frame = 0 

Query: 11  SPSEPECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICNWCLTQKEESKAK 70
           S S+ ECC CGDFG S ELF           RYCSNLYPKADCY ICNWCLTQ +ES  K
Sbjct: 4   SKSQSECCTCGDFGLSFELFHCKICQFRSQHRYCSNLYPKADCYRICNWCLTQNQESNPK 63

Query: 71  SPNSSNSSSLTTRDDHSSIKNPRNKDQIRTFLPLQTRPIK-KQRSPEASEXXXXXXXXXX 130
           SPNSS+S  +             N DQ   F     +PIK          XXXXXXXXXX
Sbjct: 64  SPNSSSSPII------------NNNDQFPNFRSRLNKPIKXXXXXXXXXXXXXXXXXXXX 123

Query: 131 XXXXIAVEDNLRRTRSEEISHRSGIQRPVIFRNKVRRYKLLDEVSS 165
           XXXX      LRRTRSEEISHR+GI+RPVIFRNKVRRYKLLDEVSS
Sbjct: 124 XXXXXXXXXKLRRTRSEEISHRTGIKRPVIFRNKVRRYKLLDEVSS 157

[Close]
BLAST of Carg22495 vs. TrEMBL
Match: tr|A0A0L9V0N5|A0A0L9V0N5_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g202300 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.6e-24
Identity = 97/202 (48.02%), Postives = 119/202 (58.91%), Query Frame = 0 

Query: 1   MTSTGAAPASSPSEPECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICNWC 60
           MT+ G   + S    ECCMCGD GFSD+LF           RYCSNLYP+ +    CNWC
Sbjct: 1   MTTKGT--SHSQPNTECCMCGDLGFSDQLFHCKVCQFRSQHRYCSNLYPEKESVGTCNWC 60

Query: 61  LTQKEESKAKSPNSSNSSSLTTRDDHSS----IKNPRNKDQIRT-----------FLPLQ 120
           L+Q+E++K KS NSSNSSS    +D  S    IKN  + +  +             L LQ
Sbjct: 61  LSQREDTKEKSTNSSNSSSSIWNNDGESRIKKIKNGGSNNSAKNIGWKKGVKGSGILHLQ 120

Query: 121 -TRPIKKQRSPEASEXXXXXXXXXXXXXXI-----------AVEDNLRRTRSEEISHRSG 165
             +PIKK +SPE   XXXXXXXXXXXX  +           A+E+ LRRTRSE+I+  SG
Sbjct: 121 IQKPIKKPKSPEXXXXXXXXXXXXXXXPVLVSTRKRIVTNGALEERLRRTRSEDIAKSSG 180

[Close]
BLAST of Carg22495 vs. TrEMBL
Match: tr|A0A0S3RMV6|A0A0S3RMV6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G183100 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.6e-24
Identity = 97/202 (48.02%), Postives = 119/202 (58.91%), Query Frame = 0 

Query: 1   MTSTGAAPASSPSEPECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICNWC 60
           MT+ G   + S    ECCMCGD GFSD+LF           RYCSNLYP+ +    CNWC
Sbjct: 1   MTTKGT--SHSQPNTECCMCGDLGFSDQLFHCKVCQFRSQHRYCSNLYPEKESVGTCNWC 60

Query: 61  LTQKEESKAKSPNSSNSSSLTTRDDHSS----IKNPRNKDQIRT-----------FLPLQ 120
           L+Q+E++K KS NSSNSSS    +D  S    IKN  + +  +             L LQ
Sbjct: 61  LSQREDTKEKSTNSSNSSSSIWNNDGESRIKKIKNGGSNNSAKNIGWKKGVKGSGILHLQ 120

Query: 121 -TRPIKKQRSPEASEXXXXXXXXXXXXXXI-----------AVEDNLRRTRSEEISHRSG 165
             +PIKK +SPE   XXXXXXXXXXXX  +           A+E+ LRRTRSE+I+  SG
Sbjct: 121 IQKPIKKPKSPEXXXXXXXXXXXXXXXPVLVSTRKRIVTNGALEERLRRTRSEDIAKSSG 180

[Close]
BLAST of Carg22495 vs. TrEMBL
Match: tr|A0A1S3UBZ0|A0A1S3UBZ0_VIGRR (uncharacterized protein LOC106763883 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763883 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-23
Identity = 101/204 (49.51%), Postives = 122/204 (59.80%), Query Frame = 0 

Query: 1   MTSTGAAPASSPSEP--ECCMCGDFGFSDELF-----------RYCSNLYPKADCYTICN 60
           MT+ G    +S SEP  ECCMCGD GFSD+LF           RYCSNLYP+ +    CN
Sbjct: 1   MTTKG----TSHSEPNTECCMCGDLGFSDQLFHCKVCQFRSQHRYCSNLYPEKESDGTCN 60

Query: 61  WCLTQKEESKAKSPNSSN-SSSLTTRDDHSSIKNPRN------------KDQIR--TFLP 120
           WCL+Q+E+ K KS NSSN SSS+   D  S IK  +N            K  ++    L 
Sbjct: 61  WCLSQREDIKEKSTNSSNSSSSIWNNDGESRIKKIKNGVSNNSGKNIGWKKGVKGSGILH 120

Query: 121 LQ-TRPIKKQRSPEASEXXXXXXXXXXXXXXI-----------AVEDNLRRTRSEEISHR 165
           LQ  +PIKK +SPE   XXXXXXXXXXXX  +           A+E+ LRRTRSE+I+  
Sbjct: 121 LQIQKPIKKPKSPEXXXXXXXXXXXXXXXPVLVSTRKRIVTTGALEERLRRTRSEDIAKS 180

The following BLAST results are available for this feature:
BLAST of Carg22495 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022951049.13.9e-7292.00uncharacterized protein LOC111454013 [Cucurbita moschata][more]
XP_023537720.11.3e-7090.91uncharacterized protein LOC111798664 [Cucurbita pepo subsp. pepo][more]
XP_023002810.11.9e-6688.64uncharacterized protein LOC111496564 [Cucurbita maxima][more]
XP_022132041.15.3e-4569.31uncharacterized protein LOC111005007 [Momordica charantia][more]
XP_004152611.14.2e-3463.03PREDICTED: uncharacterized protein LOC101216451 [Cucumis sativus] >KGN62733.1 hy... [more]
BLAST of Carg22495 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G60520.13.8e-0539.19unknown protein[more]
AT1G02070.12.5e-0434.65unknown protein[more]
BLAST of Carg22495 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg22495 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LLR8|A0A0A0LLR8_CUCSA2.8e-3463.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369840 PE=4 SV=1[more]
tr|A0A1S3BCA2|A0A1S3BCA2_CUCME4.9e-3159.64uncharacterized protein LOC103488103 OS=Cucumis melo OX=3656 GN=LOC103488103 PE=... [more]
tr|A0A0L9V0N5|A0A0L9V0N5_PHAAN7.6e-2448.02Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan07g202300 PE... [more]
tr|A0A0S3RMV6|A0A0S3RMV6_PHAAN7.6e-2448.02Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G... [more]
tr|A0A1S3UBZ0|A0A1S3UBZ0_VIGRR1.7e-2349.51uncharacterized protein LOC106763883 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22495-RACarg22495-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..122
NoneNo IPR availablePANTHERPTHR33779:SF1SUBFAMILY NOT NAMEDcoord: 1..164
NoneNo IPR availablePANTHERPTHR33779FAMILY NOT NAMEDcoord: 1..164

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg22495Csa2G369840Cucumber (Chinese Long) v2carcuB0835
Carg22495MELO3C011066Melon (DHL92) v3.5.1carmeB0816
Carg22495ClCG08G011490Watermelon (Charleston Gray)carwcgB0795
Carg22495CSPI02G21430Wild cucumber (PI 183967)carcpiB0857
Carg22495Cucsa.160410Cucumber (Gy14) v1carcgyB0937
Carg22495CmaCh12G002170Cucurbita maxima (Rimu)carcmaB1140
Carg22495CmoCh12G001710Cucurbita moschata (Rifu)carcmoB1111
Carg22495Lsi08G010050Bottle gourd (USVL1VR-Ls)carlsiB751
Carg22495Cp4.1LG07g02630Cucurbita pepo (Zucchini)carcpeB1153
Carg22495MELO3C011066.2Melon (DHL92) v3.6.1carmedB0827
Carg22495CsaV3_2G030080Cucumber (Chinese Long) v3carcucB0860
Carg22495Cla97C08G154500Watermelon (97103) v2carwmbB0855
Carg22495Bhi04G001126Wax gourdcarwgoB0958
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg22495Wax gourdcarwgoB0960
Carg22495Silver-seed gourdcarcarB069
Carg22495Silver-seed gourdcarcarB070
Carg22495Silver-seed gourdcarcarB557
Carg22495Cucumber (Gy14) v2carcgybB0810
Carg22495Cucumber (Gy14) v2carcgybB0812
Carg22495Cucumber (Gy14) v1carcgyB0939
Carg22495Cucurbita maxima (Rimu)carcmaB1139
Carg22495Cucurbita maxima (Rimu)carcmaB1141
Carg22495Cucurbita maxima (Rimu)carcmaB1142
Carg22495Cucurbita moschata (Rifu)carcmoB1110
Carg22495Cucurbita moschata (Rifu)carcmoB1112
Carg22495Cucurbita pepo (Zucchini)carcpeB1151
Carg22495Cucurbita pepo (Zucchini)carcpeB1152
Carg22495Wild cucumber (PI 183967)carcpiB0859
Carg22495Cucumber (Chinese Long) v2carcuB0836
Carg22495Cucumber (Chinese Long) v2carcuB0837
Carg22495Cucumber (Chinese Long) v3carcucB0862
Carg22495Bottle gourd (USVL1VR-Ls)carlsiB750
Carg22495Melon (DHL92) v3.5.1carmeB0815
Carg22495Melon (DHL92) v3.5.1carmeB0817
Carg22495Melon (DHL92) v3.6.1carmedB0828
Carg22495Watermelon (Charleston Gray)carwcgB0794
Carg22495Watermelon (Charleston Gray)carwcgB0796
Carg22495Watermelon (97103) v1carwmB0820
Carg22495Watermelon (97103) v1carwmB0819
Carg22495Watermelon (97103) v1carwmB0818
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