Carg22408 (gene) Silver-seed gourd

NameCarg22408
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionNAD-dependent protein deacetylase HST1-like
LocationCucurbita_argyrosperma_scaffold_155 : 294482 .. 295033 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGACCAAATCAACAACCAAACACTTCAAAAGGTAACAAAATTATTGTTTTCTATCTCTTTGTTGTCCTTCTTCTTTACCCTTCCATCTTGGCTCTTCCATTCCCCAATTCTCCGCTCTTCCAACCAACCAATCGACAAGAATTTCATATTCCTTCTCTGCAACGGTCTCCTCGTTTTCCTCGCAAAATATTCCGGTCTATTCAAATCTCTCTCCACTTCCCGACCAAATTACGACGCTTTCAGTGTCTACGAGCTCGACCCTTTGTCTCCTCCAACGATGTTAGAGGACGAAAAACAAACAACAGTGTTTACAACAACAACACGAGGAAAGAACGATGAGTCTGAAGAAAGAACCATTTCGATTCCAGAAATTGGCGACGATGATGTTGAAGAACACGACGATAGAACAACCGATGAAGAAGGGAATGACGACGCGTTGAGCGATGAAGAACTTAACCGAAAATTCGATGAATTTATCAAAAGAATGAAGGAAGAAATCATTGAGGATGCTCAAAAAAACTCTAGTGGTAGTTTAATTAGTAATTAA

mRNA sequence

ATGGCCGACCAAATCAACAACCAAACACTTCAAAAGGTAACAAAATTATTGTTTTCTATCTCTTTGTTGTCCTTCTTCTTTACCCTTCCATCTTGGCTCTTCCATTCCCCAATTCTCCGCTCTTCCAACCAACCAATCGACAAGAATTTCATATTCCTTCTCTGCAACGGTCTCCTCGTTTTCCTCGCAAAATATTCCGGTCTATTCAAATCTCTCTCCACTTCCCGACCAAATTACGACGCTTTCAGTGTCTACGAGCTCGACCCTTTGTCTCCTCCAACGATGTTAGAGGACGAAAAACAAACAACAGTGTTTACAACAACAACACGAGGAAAGAACGATGAGTCTGAAGAAAGAACCATTTCGATTCCAGAAATTGGCGACGATGATGTTGAAGAACACGACGATAGAACAACCGATGAAGAAGGGAATGACGACGCGTTGAGCGATGAAGAACTTAACCGAAAATTCGATGAATTTATCAAAAGAATGAAGGAAGAAATCATTGAGGATGCTCAAAAAAACTCTAGTGGTAGTTTAATTAGTAATTAA

Coding sequence (CDS)

ATGGCCGACCAAATCAACAACCAAACACTTCAAAAGGTAACAAAATTATTGTTTTCTATCTCTTTGTTGTCCTTCTTCTTTACCCTTCCATCTTGGCTCTTCCATTCCCCAATTCTCCGCTCTTCCAACCAACCAATCGACAAGAATTTCATATTCCTTCTCTGCAACGGTCTCCTCGTTTTCCTCGCAAAATATTCCGGTCTATTCAAATCTCTCTCCACTTCCCGACCAAATTACGACGCTTTCAGTGTCTACGAGCTCGACCCTTTGTCTCCTCCAACGATGTTAGAGGACGAAAAACAAACAACAGTGTTTACAACAACAACACGAGGAAAGAACGATGAGTCTGAAGAAAGAACCATTTCGATTCCAGAAATTGGCGACGATGATGTTGAAGAACACGACGATAGAACAACCGATGAAGAAGGGAATGACGACGCGTTGAGCGATGAAGAACTTAACCGAAAATTCGATGAATTTATCAAAAGAATGAAGGAAGAAATCATTGAGGATGCTCAAAAAAACTCTAGTGGTAGTTTAATTAGTAATTAA

Protein sequence

MADQINNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLVFLAKYSGLFKSLSTSRPNYDAFSVYELDPLSPPTMLEDEKQTTVFTTTTRGKNDESEERTISIPEIGDDDVEEHDDRTTDEEGNDDALSDEELNRKFDEFIKRMKEEIIEDAQKNSSGSLISN
BLAST of Carg22408 vs. NCBI nr
Match: XP_023525692.1 (uncharacterized protein LOC111789225 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 152/185 (82.16%), Postives = 154/185 (83.24%), Query Frame = 0

Query: 1   MADQINNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLV 60
           MADQ NNQTLQKVTKLLFSISLLSFFF LPSWLFHSPIL SSNQPIDKNF+FLLCNGLLV
Sbjct: 1   MADQNNNQTLQKVTKLLFSISLLSFFFILPSWLFHSPILHSSNQPIDKNFMFLLCNGLLV 60

Query: 61  FLAKYSGLFKSLSTSRPNYDAFSVYELDPLSPP--TMLEDXXXXXXXXXXXXXXXXXXXX 120
           FLAKYSGLFKSLST RPNYD FSVYELDPLSPP       XXXXXXXXXXXXXXXXXXXX
Sbjct: 61  FLAKYSGLFKSLSTFRPNYDVFSVYELDPLSPPXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXISIPEIGXXXXXXXXXXXXXXXXXXXXXXXXXLNRKFDEFIKRMKEEIIEDAQKNSSG 180
           XXISIPEIG             XXXXXX      LNRKFDEFIKRMKEEIIEDAQK+SSG
Sbjct: 121 XXISIPEIGNDEVEEHDDRTTDXXXXXXALSDEELNRKFDEFIKRMKEEIIEDAQKSSSG 180

Query: 181 SLISN 184
           SLISN
Sbjct: 181 SLISN 185

BLAST of Carg22408 vs. NCBI nr
Match: XP_022981623.1 (uncharacterized protein LOC111480689 [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 2.9e-44
Identity = 156/177 (88.14%), Postives = 159/177 (89.83%), Query Frame = 0

Query: 1   MADQINNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLV 60
           MADQ NNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPIL SSNQPIDKNF+FLLCNGLLV
Sbjct: 1   MADQNNNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILDSSNQPIDKNFMFLLCNGLLV 60

Query: 61  FLAKYSGLFKSLSTSRPNYDAFSVYELDPLSPPTM---LEDXXXXXXXXXXXXXXXXXXX 120
           FLAKYSGLFKSLSTS+PNYDAFSVYELD LSPPTM      XXXXXXXXXXXXXXXXXXX
Sbjct: 61  FLAKYSGLFKSLSTSQPNYDAFSVYELDSLSPPTMXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXISIPEIGXXXXXXXXXXXXXXXXXXXXXXXXXLNRKFDEFIKRMKEEIIEDAQK 175
           XXX       XXXXXXXXXXXXXXXXXXXXXXXXX  RKFDEFIKRMKEEII+DAQK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFDEFIKRMKEEIIDDAQK 177

BLAST of Carg22408 vs. NCBI nr
Match: XP_022936021.1 (uncharacterized protein LOC111442742 [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 104/192 (54.17%), Postives = 115/192 (59.90%), Query Frame = 0

Query: 10  LQKVTKLLFSISLLSFFFTL--PSW----LFH-SPILRSS--NQPIDKNFIFLLCNGLLV 69
           L+KVTKLLFS+SL SF F L  P+W    LFH SP  R    NQPIDKN +FLLCN LLV
Sbjct: 30  LKKVTKLLFSLSLFSFLFALPIPTWLPFHLFHNSPNSRFHFLNQPIDKNSMFLLCNALLV 89

Query: 70  FLAKYSGLFKSLSTSRPNYDAFS-VYELDPLSPP--TMLEDXXXXXXXXXXXXXXXXXXX 129
           FLA YSGLFKSLS+S  ++D  S +Y+  PLS P  T L                     
Sbjct: 90  FLANYSGLFKSLSSSSRSFDPCSRLYDFGPLSEPITTELVQKPPLIPTETAADEKNDDPD 149

Query: 130 XXXISIPEIG------------------XXXXXXXXXXXXXXXXXXXXXXXXXLNRKFDE 172
              +S PE G                  XXXXXXXXXXXXXXXXXXXXXXXXX  RKFDE
Sbjct: 150 ERIVSAPENGEEDESYGLAARFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKFDE 209

BLAST of Carg22408 vs. NCBI nr
Match: KGN44005.1 (hypothetical protein Csa_7G098730 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 83/181 (45.86%), Postives = 95/181 (52.49%), Query Frame = 0

Query: 6   NNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLVFLAKY 65
           ++QTL+KVTKLLFSISL SFF T   + FH       NQPIDKN +FLLCN LLVFLA Y
Sbjct: 27  SHQTLKKVTKLLFSISLFSFFITNLPFHFHVISSHFFNQPIDKNSMFLLCNALLVFLANY 86

Query: 66  SGLFKSLSTSRPNYD-------AFSVYELDPLSPPTML--------EDXXXXXXXXXXXX 125
           SGLFKSLS+S  +          F  + LD L  P+ +        +D            
Sbjct: 87  SGLFKSLSSSSSSSPKHLDTNFRFFDFGLDLLQKPSSIHSETPEEKKDDALQNPPNLEQQ 146

Query: 126 XXXXXXXXXXISIPEIGXXXXXXXXXXXXXXXXXXXXXXXXXLNRKFDEFIKRMKEEIIE 172
                     +   E G       XXXXXXXXX         LNRKFDEFIKRMKEEII 
Sbjct: 147 QQQAEVLGETLFGSETG-ELVEMIXXXXXXXXXNCGVMSDEELNRKFDEFIKRMKEEIIL 206

BLAST of Carg22408 vs. NCBI nr
Match: XP_022975721.1 (uncharacterized protein LOC111475827 [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 0

Query: 7   NQTLQKVTKLLFSISLLSFFFTL--PSW----LFH-SPILRSS--NQPIDKNFIFLLCNG 66
           +QTL+KVTKLLFS+SL SF F L  P+W    LFH SP  R    NQPIDKN +FLLCN 
Sbjct: 8   DQTLKKVTKLLFSLSLFSFLFALPIPTWLPFHLFHNSPNSRFHFLNQPIDKNSMFLLCNA 67

Query: 67  LLVFLAKYSGLFKSLSTSRPNYDAFS-VYELDPLSPPTMLE 98
           LLVFLA YSGLFKSLS+S  ++D  S +Y+  PL  P   E
Sbjct: 68  LLVFLANYSGLFKSLSSSSRSFDPCSRLYDFGPLCEPITAE 108

BLAST of Carg22408 vs. TAIR10
Match: AT3G13130.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-05
Identity = 25/69 (36.23%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 3  DQINNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLVFL 62
          DQI  + L+K+TK +     +    T   +  +  +++     +DKN++FLLCNGL+V +
Sbjct: 2  DQIKPEFLKKLTKFIAVSMWILSLLTSHDFYLYRFMIQLVTHAVDKNYMFLLCNGLVVVV 61

Query: 63 AKYSGLFKS 72
          AK SGL  S
Sbjct: 62 AKCSGLVAS 70

BLAST of Carg22408 vs. TrEMBL
Match: tr|A0A0A0K300|A0A0A0K300_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098730 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 83/181 (45.86%), Postives = 95/181 (52.49%), Query Frame = 0

Query: 6   NNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLVFLAKY 65
           ++QTL+KVTKLLFSISL SFF T   + FH       NQPIDKN +FLLCN LLVFLA Y
Sbjct: 27  SHQTLKKVTKLLFSISLFSFFITNLPFHFHVISSHFFNQPIDKNSMFLLCNALLVFLANY 86

Query: 66  SGLFKSLSTSRPNYD-------AFSVYELDPLSPPTML--------EDXXXXXXXXXXXX 125
           SGLFKSLS+S  +          F  + LD L  P+ +        +D            
Sbjct: 87  SGLFKSLSSSSSSSPKHLDTNFRFFDFGLDLLQKPSSIHSETPEEKKDDALQNPPNLEQQ 146

Query: 126 XXXXXXXXXXISIPEIGXXXXXXXXXXXXXXXXXXXXXXXXXLNRKFDEFIKRMKEEIIE 172
                     +   E G       XXXXXXXXX         LNRKFDEFIKRMKEEII 
Sbjct: 147 QQQAEVLGETLFGSETG-ELVEMIXXXXXXXXXNCGVMSDEELNRKFDEFIKRMKEEIIL 206

BLAST of Carg22408 vs. TrEMBL
Match: tr|A0A1S3CI71|A0A1S3CI71_CUCME (uncharacterized protein LOC103501239 OS=Cucumis melo OX=3656 GN=LOC103501239 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 109/185 (58.92%), Postives = 119/185 (64.32%), Query Frame = 0

Query: 6   NNQTLQKVTKLLFSISLLSFFFTLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLVFLAKY 65
           ++ TL+KVTKLLFS+SL SFFFT   + FH       NQPIDKN +FLLCN LLVFLA Y
Sbjct: 26  SHPTLKKVTKLLFSLSLFSFFFTNLPFHFHIS-SHFFNQPIDKNSMFLLCNALLVFLANY 85

Query: 66  SGLFKSLSTSRPNYDA---FSVYELDPLSPPTMLED----------------XXXXXXXX 125
           SGLFKSLS+S  + D    F  + LD L  P+                    XXXXXXXX
Sbjct: 86  SGLFKSLSSSPKHLDTNFRFFDFGLDLLQKPSSTHSETXXXXXXXXXXXXXXXXXXXXXX 145

Query: 126 XXXXXXXXXXXXXXISIPEIGXXXXXXXXXXXXXXXXXXXXXXXXXLNRKFDEFIKRMKE 172
           XXXXXXXXXXXXXX       XXXXXXXXXXXXXXXX         LNRKFDEFIKRMKE
Sbjct: 146 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNCGVMSDEELNRKFDEFIKRMKE 205

BLAST of Carg22408 vs. TrEMBL
Match: tr|A0A2N9FA96|A0A2N9FA96_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11995 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.0e-10
Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 10  LQKVTKLLFSISLLSFFFT---LPSWL------FHSPILRSSNQPIDKNFIFLLCNGLLV 69
           L +VT+LL S+SL SFFFT   L S+L      F +  L+  +  +DKN+IFLLCNGLLV
Sbjct: 21  LNRVTQLLLSVSLFSFFFTHSYLLSFLQPFNFYFSTFPLQLFSHTLDKNYIFLLCNGLLV 80

Query: 70  FLAKYSGLFKSLSTSRPNYDAFSVYELD 89
           FLAKYSGL +SLS +  N ++F   E D
Sbjct: 81  FLAKYSGLIRSLSGAYHNEESFKSSEDD 108

BLAST of Carg22408 vs. TrEMBL
Match: tr|A0A1U8KX99|A0A1U8KX99_GOSHI (uncharacterized protein LOC107921743 OS=Gossypium hirsutum OX=3635 GN=LOC107921743 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = 0

Query: 7   NQTLQKVTKLLFSISLLSFFF------TLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLV 66
           +Q  +K+T+LL S+S+ S FF      +L S    +   +  +  I+KNFIFLLCNGLLV
Sbjct: 14  SQFHRKLTRLLLSVSIFSLFFSHSLFHSLNSTFHDTLAFKFLSHNIEKNFIFLLCNGLLV 73

Query: 67  FLAKYSGLFKSLSTSRPNYDAFSVYELDPLSPPTMLEDXXXXXXXXXXXXXXXXXXXXXX 126
           FLAK+SGL  S S    ++ +F  YE    +  T L+                       
Sbjct: 74  FLAKFSGLISSSSKHNNDHQSFKSYEYVTQTESTSLDPKTPLLEKEENAGLGEEELKRAS 133

Query: 127 ISIPEIGXXXXXXXXXXXXXXXXXXXXXXXXXLNRKFDEFIKRMKEEIIEDA 173
           +  P +                          +N++FDEFI+++KEE+  +A
Sbjct: 134 VDEPFV------------------------EEMNKRFDEFIRKVKEELSTEA 161

BLAST of Carg22408 vs. TrEMBL
Match: tr|A0A0D2U4X6|A0A0D2U4X6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G449500 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.9e-09
Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = 0

Query: 7   NQTLQKVTKLLFSISLLSFFF------TLPSWLFHSPILRSSNQPIDKNFIFLLCNGLLV 66
           +Q  +K+T+LL S+S+ S FF      +L S    +   +  +  I+KNFIFLLCNGLLV
Sbjct: 14  SQFHRKLTRLLLSVSIFSLFFSHSLFHSLNSTFHDTLAFKFLSHNIEKNFIFLLCNGLLV 73

Query: 67  FLAKYSGLFKSLSTSRPNYDAFSVYELDPLSPPTMLEDXXXXXXXXXXXXXXXXXXXXXX 126
           FLAK+SGL  S S    ++ +F  YE    +  T L+                       
Sbjct: 74  FLAKFSGLISSSSKHNNDHQSFKSYEYVTQTESTSLDPKTPLLEKEENAGLDEEELKRAS 133

Query: 127 ISIPEIGXXXXXXXXXXXXXXXXXXXXXXXXXLNRKFDEFIKRMKEEIIEDA 173
           +  P +                          +N++FDEFI+++KEE+  +A
Sbjct: 134 VDEPFV------------------------EEMNKRFDEFIRKVKEELSTEA 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023525692.12.0e-5382.16uncharacterized protein LOC111789225 [Cucurbita pepo subsp. pepo][more]
XP_022981623.12.9e-4488.14uncharacterized protein LOC111480689 [Cucurbita maxima][more]
XP_022936021.11.5e-1654.17uncharacterized protein LOC111442742 [Cucurbita moschata][more]
KGN44005.12.6e-1645.86hypothetical protein Csa_7G098730 [Cucumis sativus][more]
XP_022975721.12.6e-1659.41uncharacterized protein LOC111475827 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G13130.12.5e-0536.23unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0K300|A0A0A0K300_CUCSA1.7e-1645.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G098730 PE=4 SV=1[more]
tr|A0A1S3CI71|A0A1S3CI71_CUCME1.6e-1458.92uncharacterized protein LOC103501239 OS=Cucumis melo OX=3656 GN=LOC103501239 PE=... [more]
tr|A0A2N9FA96|A0A2N9FA96_FAGSY7.0e-1052.27Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11995 PE=4 SV=1[more]
tr|A0A1U8KX99|A0A1U8KX99_GOSHI5.9e-0929.65uncharacterized protein LOC107921743 OS=Gossypium hirsutum OX=3635 GN=LOC1079217... [more]
tr|A0A0D2U4X6|A0A0D2U4X6_GOSRA5.9e-0929.65Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G449500 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22408-RACarg22408-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..151
NoneNo IPR availablePANTHERPTHR34947FAMILY NOT NAMEDcoord: 6..112
coord: 95..174