Carg22332 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22332
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RPM1-interacting protein 4-like
Location	Cucurbita_argyrosperma_scaffold_091 : 290553 .. 292618 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAGCTTTTTAATTAATTTAGCCGATATTTATTATTATTATTATTAATTATTTAGAATCGAAATAAAAGGCAGCAGTTGGAGGCCGATTTGGCATAAACAAAATCTCTTCTTCTTGTCTCTCTTGCTCGCTCCTCTCCTTCTCCTGGTGTCGCCATCCTCTTTCTTCCCTTCTTCCGTTCTTCGTTTTGGCCGATTATCTTCTCCTTTTTCCCAATTTCTGCAATCATGGCGGTATGTCATTCCTCAATTCATTCCATTTACTTCCCCGAATTCGGTTTTGTTCTTTTTCTTCATTGTTGATTTCCCCATTTCGTCATCTCCTTTCTTTCTTCCTTTTAGATTCACTGCCTCGATTGTTCCCCCTCTTTTCTTGGAGATTTGCTTAATGATTGTCATGCCTGGATTTTCTTCCCCATTATCATTATTATTATATGTTTTATTTGTTCCTTTTATTTATAATTTTTGTGATATGTTGTGAATCTGCATTTCCTCTCCACTCTGATCTTATCATCTAGTGTGTTAGTCACTGGGACTTGACATTTTCGTATGTTTGAATTGAATTTTCGTTATCATGATTCATGGAATTTGATCGCCCAAGTATTTGTAATTGATAGAATTCTGATAGATAAGGATATTTAAAATTTAAATCAGCTGTGAAGAAACATTTTTAGTTTTTCCCATCACTTTCTCATCTTTTTATCTCGCAATTCCTTCGTCTAATTTATGATTTCTGCTATTAATTATGAATCATCCTATTTTTATATCATTAATGGAAGAAAAAGCAATTAAGTCCTTCAAATTTTTACTTCGAAATCCATGATCTATATTTTAAGAGACTAAACGTTCAGAATTTGAATCCTTATTTTCATTATTCATTGTTGACTGCTTTTGATCGACAAATCTGAACATTTTTGTTGGGTTAAATTATAAATTTAATCGATGTACTTTGGCTCTGTCTAGTCCTTTGAGCTGTTAAACTTTTCAATTTGGTCTTAAAATTTGGATTACGCTTTTCTCTAATCCCTTCCATTGCATTATTAATAGAAACTGATGTAGAAGATATATTACATAAATTTTCGTTGGACATTTCATTAATATTGTTAATTGTTAATGATGGGGACATGATATAAGCATAATGTATGCATTTTAATGTCTAGAATCAAATAAATGTATGTATTTTAACAGGAGAAGGGTCAGCCACTACCGAAGTTTGGTGAATGGGATGTTAATAACCCTGCTTCTGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGATGTGAGAAGAAATCCGGTGGCCAAATCGGATCACCTGGAAAGGCACTAAGGCCTGCAGCAGCAGGCTCTGGCAAACCTCAGGCAGTAAGATCCTATGAACACAATGTTTTTTCCTAGCCTTTTCTATAATGCCTGCTATATGTGTATATACCTCCTCTTCATTGTGATATTTACTGCTTGTTTGTGCGCCTAAATATGTTCGGAATACCATTAGGATAAAAGGGTTGGTTGTAACTCAAGGGAATGGGATCTTATAATGGGCTTCTGTGCTTGTTTGATCATTCTTCATTGAAATGAAATAGATGTTTTTGGACTTTGGAATGATGCTCAAGCACTGTTTTTTGCTTCGTTTGGTTTAATCAACAATCAGTGAGGTGAAATGAAATAGATGCTTGTTTGATCATTCTTTATGAGCTGTTACACCTTTCCTTGATGGGATTATGTTTTTTTCTGTTCCAGAAATGGTTCTGCTGCATTCAGAGCCCACCTACAGAATCTTGATGGTACTACCTGTCTGTAGATAACCACCGAAACGGCCTAAGATCGTCCACTGGTCTTCGAAGAAGATGAGATTTTCAAAGCTGTGATCATCAGCCTGCTATACTATTTGCTTCATAATCTGGGTCATGGAGGAAAAAGGTAGAACAATTTTACCTTCTTTGTTTGTGATACTGATATGATGAATTGTCACTAGAAGCTGAGCTATTCCATCTCATTTGTCTCTACCTCCTTTTTGCCCCTTTTTGCTCCTTATATCTTATATTCAATCTCTATTATTGTTTCTG

mRNA sequence

TTTTAGCTTTTTAATTAATTTAGCCGATATTTATTATTATTATTATTAATTATTTAGAATCGAAATAAAAGGCAGCAGTTGGAGGCCGATTTGGCATAAACAAAATCTCTTCTTCTTGTCTCTCTTGCTCGCTCCTCTCCTTCTCCTGGTGTCGCCATCCTCTTTCTTCCCTTCTTCCGTTCTTCGTTTTGGCCGATTATCTTCTCCTTTTTCCCAATTTCTGCAATCATGGCGGAGAAGGGTCAGCCACTACCGAAGTTTGGTGAATGGGATGTTAATAACCCTGCTTCTGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGATGTGAGAAGAAATCCGGTGGCCAAATCGGATCACCTGGAAAGGCACTAAGGCCTGCAGCAGCAGGCTCTGGCAAACCTCAGGCAAAATGGTTCTGCTGCATTCAGAGCCCACCTACAGAATCTTGATGGTACTACCTGTCTGTAGATAACCACCGAAACGGCCTAAGATCGTCCACTGGTCTTCGAAGAAGATGAGATTTTCAAAGCTGTGATCATCAGCCTGCTATACTATTTGCTTCATAATCTGGGTCATGGAGGAAAAAGGTAGAACAATTTTACCTTCTTTGTTTGTGATACTGATATGATGAATTGTCACTAGAAGCTGAGCTATTCCATCTCATTTGTCTCTACCTCCTTTTTGCCCCTTTTTGCTCCTTATATCTTATATTCAATCTCTATTATTGTTTCTG

Coding sequence (CDS)

ATGGCGGAGAAGGGTCAGCCACTACCGAAGTTTGGTGAATGGGATGTTAATAACCCTGCTTCTGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGATGTGAGAAGAAATCCGGTGGCCAAATCGGATCACCTGGAAAGGCACTAAGGCCTGCAGCAGCAGGCTCTGGCAAACCTCAGGCAAAATGGTTCTGCTGCATTCAGAGCCCACCTACAGAATCTTGA

Protein sequence

MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQAKWFCCIQSPPTES

Homology

[Close]

BLAST of Carg22332 vs. NCBI nr
Match: XP_022932369.1 (RPM1-interacting protein 4-like isoform X2 [Cucurbita moschata] >XP_023553401.1 RPM1-interacting protein 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 4.5e-36
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQ 60
          MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQ
Sbjct: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQ 60

Query: 61 AKWFCCIQSPPTES 75
          AKWFCCIQSPPTES
Sbjct: 61 AKWFCCIQSPPTES 74

[Close]

BLAST of Carg22332 vs. NCBI nr
Match: XP_022965237.1 (RPM1-interacting protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 156.4 bits (394), Expect = 3.8e-35
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQ 60
          MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQI SPGKALRPAAAGSGKPQ
Sbjct: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIESPGKALRPAAAGSGKPQ 60

Query: 61 AKWFCCIQSPPTES 75
          AKWFCCIQSPPTES
Sbjct: 61 AKWFCCIQSPPTES 74

[Close]

BLAST of Carg22332 vs. NCBI nr
Match: XP_022932368.1 (RPM1-interacting protein 4-like isoform X1 [Cucurbita moschata] >XP_023553400.1 RPM1-interacting protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQ 60
          MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQ
Sbjct: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQ 60

Query: 61 A 62
          A
Sbjct: 61 A 61

[Close]

BLAST of Carg22332 vs. NCBI nr
Match: XP_022965236.1 (RPM1-interacting protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-25
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQ 60
          MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQI SPGKALRPAAAGSGKPQ
Sbjct: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIESPGKALRPAAAGSGKPQ 60

Query: 61 A 62
          A
Sbjct: 61 A 61

[Close]

BLAST of Carg22332 vs. NCBI nr
Match: XP_004148258.1 (PREDICTED: RPM1-interacting protein 4 [Cucumis sativus] >KGN56031.1 hypothetical protein Csa_3G047910 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 6.1e-25
Identity = 62/76 (81.58%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPA-AAGSGKP 60
          M+EKGQPLPKFGEWDVNNPASAEGFTVIFNKAR EKK+GGQ  SPGKA R    A  GKP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKP 60

Query: 61 QA-KWFCCIQSPPTES 75
          QA KWFCCIQSPPT+S
Sbjct: 61 QAKKWFCCIQSPPTQS 76

[Close]

BLAST of Carg22332 vs. TAIR10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 96.7 bits (239), Expect = 6.5e-21
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSG--- 60
          MA+KG+PLPKFGEWDVN+P+SAEGFTVIFNKAR EKK GG+  SPGK   P    +G   
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKD-EPGYNKNGEVL 60

Query: 61 -KPQAKWFCCIQS 70
           KP  KWFCCI++
Sbjct: 61 EKPAKKWFCCIRA 72

[Close]

BLAST of Carg22332 vs. TAIR10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-17
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALR-PAAAGSGKP 60
          +KG+PLPKFGEWDVN+PASAEGFTVIFNKAR EKK+GG+ GSPGK+      +G G P
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 76

[Close]

BLAST of Carg22332 vs. TAIR10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-13
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1  MAE-KGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGS-PGKALRPA------ 60
          MAE KG+PLPKFGEWDVNNPASAEGFTVIF+KA  EKK+    G+ P   + P       
Sbjct: 1  MAENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSD 60

Query: 61 -----AAGSGKPQAKWFC 66
               ++ + K + KWFC
Sbjct: 61 QNNNHSSQNPKAKNKWFC 78

[Close]

BLAST of Carg22332 vs. TAIR10
Match: AT5G40645.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 67.0 bits (162), Expect = 5.5e-12
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQAK 62
          ++ +PLPKFGEWDVN+PASAEGFTVIF KAR +KK+    G      R       +P  K
Sbjct: 10 QQDRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNAS-GRAASQRRDNNKSQDEPTKK 69

Query: 63 WFCC 67
           FCC
Sbjct: 70 RFCC 72

[Close]

BLAST of Carg22332 vs. TAIR10
Match: AT4G35655.1 (RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 66.2 bits (160), Expect = 9.4e-12
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 6  QPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQAKWFC 65
          +PLPKFGEWDVN+PA+AEGFTVIF+KA  +KK+G    S  KA         KP  KW C
Sbjct: 8  RPLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTG---RSSSKAPSQRKQDGVKPTKKWLC 64

[Close]

BLAST of Carg22332 vs. Swiss-Prot
Match: sp|O22633|NOI4_ARATH (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-21
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKA----LRPAAAGS 60
          M++KG+PLPKFGEWDVN+PASAEGFTVIFNKAR EKK+GG+ GSPGK+    ++      
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

Query: 61 GKPQ-AKWFCCIQSPPTES 75
           KPQ  KW CC+Q+P  +S
Sbjct: 61 SKPQPKKWLCCMQAPAVDS 79

[Close]

BLAST of Carg22332 vs. Swiss-Prot
Match: sp|Q8GYN5|RIN4_ARATH (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-08
Identity = 29/64 (45.31%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 3   EKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPAAAGSGKPQAK 62
           EK   +PKFG+WD NNP+SA+G+T IFNK R E+ SG  +   G +  P    S  P   
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS--GSSRTPTHQSSRNPNNT 202

Query: 63  WFCC 67
             CC
Sbjct: 203 SSCC 204

[Close]

BLAST of Carg22332 vs. TrEMBL
Match: tr|A0A0A0L7F7|A0A0A0L7F7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047910 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 62/76 (81.58%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPA-AAGSGKP 60
          M+EKGQPLPKFGEWDVNNPASAEGFTVIFNKAR EKK+GGQ  SPGKA R    A  GKP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKP 60

Query: 61 QA-KWFCCIQSPPTES 75
          QA KWFCCIQSPPT+S
Sbjct: 61 QAKKWFCCIQSPPTQS 76

[Close]

BLAST of Carg22332 vs. TrEMBL
Match: tr|A0A1S3BL66|A0A1S3BL66_CUCME (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103491035 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 61/76 (80.26%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKALRPA-AAGSGKP 60
          M+EKGQPLPKFGEWDVNNPASAEGFTVIFNKAR EKK+GGQ  SPGKA +    A  GKP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60

Query: 61 QA-KWFCCIQSPPTES 75
          QA KWFCCIQSPPT+S
Sbjct: 61 QAKKWFCCIQSPPTQS 76

[Close]

BLAST of Carg22332 vs. TrEMBL
Match: tr|E9RJK2|E9RJK2_VICFA (Putative nitrate-induced NOI protein OS=Vicia faba OX=3906 GN=NOI PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-22
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGK-ALRP---AAAGS 60
          M+EKG+PLPKFGEWDVN+PASAEGFTVIFNKAR EKK+GG   SPGK A  P    A+  
Sbjct: 1  MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNTESPGKTATEPQSKPASDP 60

Query: 61 GKPQA-KWFCCIQSPPTES 75
          GKPQ+ KWFCCIQ+PP ES
Sbjct: 61 GKPQSKKWFCCIQNPPAES 79

[Close]

BLAST of Carg22332 vs. TrEMBL
Match: tr|A0A2I4F1A1|A0A2I4F1A1_9ROSI (RPM1-interacting protein 4 OS=Juglans regia OX=51240 GN=LOC108994597 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-21
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGK--ALRPAAAGSGK 60
          M++KGQPLPKFGEWDVN+PASAEGFTVIFNKAR EKK+GG   SPGK  +    A   GK
Sbjct: 1  MSDKGQPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKVDSQSKPAVDVGK 60

Query: 61 PQA-KWFCCIQSPPTES 75
          PQA KWFCC+Q PPT S
Sbjct: 61 PQAKKWFCCLQDPPTHS 77

[Close]

BLAST of Carg22332 vs. TrEMBL
Match: tr|A0A2P5F897|A0A2P5F897_9ROSA (RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Trema orientalis OX=63057 GN=TorRG33x02_100400 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-21
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MAEKGQPLPKFGEWDVNNPASAEGFTVIFNKARCEKKSGGQIGSPGKA---LRPAAAGSG 60
          M+EKG+PLPKFGEWDVN+PASAEGFTVIFNKAR EKK+GG+  SPGK    ++P A  + 
Sbjct: 1  MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPGKTDSNIKPPADPAK 60

Query: 61 KPQA-KWFCCIQSPPTES 75
           PQ+ KWFCCIQ PP ES
Sbjct: 61 PPQSKKWFCCIQDPPAES 78

The following BLAST results are available for this feature:

BLAST of Carg22332 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932369.1	4.5e-36	100.00	RPM1-interacting protein 4-like isoform X2 [Cucurbita moschata] >XP_023553401.1 ...	[more]
XP_022965237.1	3.8e-35	98.65	RPM1-interacting protein 4-like isoform X2 [Cucurbita maxima]	[more]
XP_022932368.1	1.5e-26	100.00	RPM1-interacting protein 4-like isoform X1 [Cucurbita moschata] >XP_023553400.1 ...	[more]
XP_022965236.1	1.2e-25	98.36	RPM1-interacting protein 4-like isoform X1 [Cucurbita maxima]	[more]
XP_004148258.1	6.1e-25	81.58	PREDICTED: RPM1-interacting protein 4 [Cucumis sativus] >KGN56031.1 hypothetical...	[more]

BLAST of Carg22332 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04410.1	6.5e-21	65.75	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.3e-17	70.69	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	3.8e-13	52.56	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G40645.1	5.5e-12	53.13	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT4G35655.1	9.4e-12	56.67	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of Carg22332 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22633\|NOI4_ARATH	2.1e-21	62.03	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
sp\|Q8GYN5\|RIN4_ARATH	4.6e-08	45.31	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of Carg22332 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7F7\|A0A0A0L7F7_CUCSA	4.0e-25	81.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047910 PE=4 SV=1	[more]
tr\|A0A1S3BL66\|A0A1S3BL66_CUCME	1.2e-24	80.26	RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103491035 PE=4 SV=...	[more]
tr\|E9RJK2\|E9RJK2_VICFA	7.1e-22	72.15	Putative nitrate-induced NOI protein OS=Vicia faba OX=3906 GN=NOI PE=2 SV=1	[more]
tr\|A0A2I4F1A1\|A0A2I4F1A1_9ROSI	1.6e-21	71.43	RPM1-interacting protein 4 OS=Juglans regia OX=51240 GN=LOC108994597 PE=4 SV=1	[more]
tr\|A0A2P5F897\|A0A2P5F897_9ROSA	2.7e-21	69.23	RIN4, pathogenic type III effector avirulence factor Avr cleavage site OS=Trema ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22332-RA	Carg22332-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 3..38 e-value: 2.3E-21 score: 74.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..59
None	No IPR available	PANTHER	PTHR33159:SF2	RPM1-INTERACTING PROTEIN 4 RIN4 FAMILY PROTEIN	coord: 1..74
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 1..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22332	Cla004472	Watermelon (97103) v1	carwmB0584
Carg22332	Csa3G047910	Cucumber (Chinese Long) v2	carcuB0615
Carg22332	MELO3C014114	Melon (DHL92) v3.5.1	carmeB0591
Carg22332	ClCG10G004410	Watermelon (Charleston Gray)	carwcgB0573
Carg22332	CSPI03G04200	Wild cucumber (PI 183967)	carcpiB0621
Carg22332	Cucsa.042110	Cucumber (Gy14) v1	carcgyB0661
Carg22332	CmaCh16G009560	Cucurbita maxima (Rimu)	carcmaB0819
Carg22332	CmoCh16G009960	Cucurbita moschata (Rifu)	carcmoB0796
Carg22332	CmoCh06G006800	Cucurbita moschata (Rifu)	carcmoB0798
Carg22332	Lsi05G005050	Bottle gourd (USVL1VR-Ls)	carlsiB532
Carg22332	Cp4.1LG08g08340	Cucurbita pepo (Zucchini)	carcpeB0834
Carg22332	Cp4.1LG14g07800	Cucurbita pepo (Zucchini)	carcpeB0833
Carg22332	CsGy3G004200	Cucumber (Gy14) v2	carcgybB0588
Carg22332	MELO3C014114.2	Melon (DHL92) v3.6.1	carmedB0599
Carg22332	CsaV3_3G004190	Cucumber (Chinese Long) v3	carcucB0622
Carg22332	Cla97C10G188830	Watermelon (97103) v2	carwmbB0614
Carg22332	Bhi11G000371	Wax gourd	carwgoB0698

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22332	Carg23545	Silver-seed gourd	carcarB006

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22332	Cucumber (Gy14) v2	carcgybB0587
Carg22332	Cucumber (Gy14) v1	carcgyB0660
Carg22332	Cucurbita maxima (Rimu)	carcmaB0821
Carg22332	Wild cucumber (PI 183967)	carcpiB0620
Carg22332	Cucumber (Chinese Long) v2	carcuB0614
Carg22332	Cucumber (Chinese Long) v3	carcucB0621
Carg22332	Bottle gourd (USVL1VR-Ls)	carlsiB531
Carg22332	Melon (DHL92) v3.5.1	carmeB0592
Carg22332	Melon (DHL92) v3.6.1	carmedB0598
Carg22332	Watermelon (Charleston Gray)	carwcgB0572
Carg22332	Watermelon (97103) v1	carwmB0586
Carg22332	Watermelon (97103) v2	carwmbB0613
Carg22332	Wax gourd	carwgoB0697