Carg22174 (gene) Silver-seed gourd

Overview
NameCarg22174
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_274 : 175568 .. 177980 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCCCTCTTCTCTTCCGTTCAAAACCCATCTCGATTTTCAATCTTCCCGTTCAAACTCACCTTCAAAATCCTCCATTCTTTCCGACCACTCTCATCATCGGCAGCCGCCGGAAAACCCAAATGGAATTCACTCACCAATGTCTTCATTACCAACCCAACTCTTCTGATCCTACAATCATGCTCTTCCATGTTTCATTTGAAGCAAATTCAAGCTCACATGACTTGCACTGGCCTCATGAACCAAATCTTCCCGGCCAGCCGCGTCGTAGCCTTTTGTGCTCTCTCCGATGCCGGTGACATTCATTATGCCCATCTCGTTTTCGCTCAAATTGAAAACCCTAATTGCTTTTTGTGGAATACGATGATTAAGGGTTATTGCAGAGCTAAATGCCCTTCAATGGGGTTCTTGTTTTTCCGGCAAATGATTCGGAATCGAGTTGAATTGGACTGTGGGAGCTTTGTTTCTGCGCTCAAGGTGTGCGGCCAATTTTCCGGGAAAGCAATAAGAATGGCGGTGCATTCTGTGGTTTGGAAGTTGGGGTTTGGTTCTGAATTGCTGGTTCAAAATGGATTGATTCAGTACTATGTTGAAACTGGGTGTATTGGTTTTGCACGCCAAGTGTTTGATGAAAGTTCTGTGAAGGATGTTGTTACTTGGACGACGATGATCAATGGATACACAACGAACAATTGTTTGGATGAGGCTATAATGTTGTTCGATATGATGTCGTCGAGTAACGTTGAGCCGAATGAGGTCACTATGATTGCTTTGCTTTCTGCTTGCTCGCAGAAGGGAGATTATGTAATGGGGAGGTCACTTCATGAACTCATAAAAAGGAAGAACATAAGCTCCAGTGTTAATTTGGTCAATACCATGTTGGATATGTATGTGAAATGTGGCTATTTAGTAACTGCTAGAGAGATTTTTGACAACATGGAAAGAAGGGATGTTTTTTCTTGGACTAGCTTGCTTAATGGACTTGCTAAAAATGGAGATTTGGAAGCTGCAAGGAAGGTGTTTGATGAAATGCCTGAGAGAAATATTGTCTCTTGGAATGCTATGATTGCTGGTTATTCCCAAAACAGTCAGCCAATGGAAGCTTTGAAGCTATTTCACAACATGGTGGATGTTGTCGGATTGGTTCCAACCGAGGACACTTTGGCCTGTGTGCTTTCTGCTTGTGGCCAATTGGGATGCTTAGAAATGGGCAAATGGATTCATGACAACCATGTCAATAAAATGGGAATTCAATTGAGTTTGATTCTGAACAATGCAGTTATGGACATGTATGCCAAATGTGGGAGCATTGATGCAGCTGCAAAGCTCTTCCACTCCATTCCCGAGAAAAATCTAGTTTCTTGGAACACAATGATATCTGCATATGCATCTCATGGCCATGCCAAGAGAGCTCTCACTCTGTTCGATCAAATGAAACACTCGGGACTAAAACCAGATCACATCACCTTCATCAGCGTTCTATCAGCTTGCAGTTACGGTGGGTTTGTTTCGAAAGGTCGGGAGCATTTCGAAAGCATGGAGAATACCTTTGGAATAGAGCCAAAGAGGGAACACTACGCTTGTATGGTGGATTTGTTTAGTCGAGTTGGGTTGTTAAAAGAAGCTTACGAGCTAATATCGAAGATGCCGATCAAAGCAAGTGAAGGGGCTTGGGGAGCTTTGCTTGATGCTTGTAGGAAGCAGGGGAATGTGGAAATGGCTAAGTTAGCAGCTGGGAAGCTTTTGGAGTTGGATCCTGAGGACAGTGGGATTTATACTCTTTTGGCGAATATTTGTGCTAATGGGAAGAGATGGAACGATGTGAGAATGGTGAGAAGGATGATGAGAGAAAGAGGAGTCAAGAAGGTTCCTGGGCATAGCTTGATAGAGGTTGGAGGTACGTTTCATGAATTCTTAGTTGCTGATAATTCTCATCCTCATTCTTTAGAAGTTTATAGAGTGGTTAATGAATTGCTTCTGCTGTCTAGTTTGATAGATCTTGAACCTCTAGAAAATGATTAGTTCTTATATGATTTCCAGAAATTCTTAGTTAGATAATATGACTACAAGGTAGAATTTGAATTATGGAAGTATTTAGAGGTACTTGTGGTGGATGAGATGGTACCTATGAGATGCACGGCGGTTGGAGAGAAGAACGAAACATTTTTTTATAAAGGCGTGGAAACCTCTTTCCAGTAGACGCGTTTTAGGGAAAGCCCAAAGATGACAATATCAATTAGCGGTGGGTTTGAGTGGCTAGAATACCTTTCTACCTAGCTAATTGATTAGTTTAAAAGAATCAATCACTTTAAGAAACTCACGATAGATCTGGTCGTTGCGTCTAACAGCTCTCACGGCCGACGATGACAATCCTTCTAGATATGCATTTCTTTGCAGTAGTTCAAAGTGA

mRNA sequence

ATGAAACCCCTCTTCTCTTCCGTTCAAAACCCATCTCGATTTTCAATCTTCCCGTTCAAACTCACCTTCAAAATCCTCCATTCTTTCCGACCACTCTCATCATCGGCAGCCGCCGGAAAACCCAAATGGAATTCACTCACCAATGTCTTCATTACCAACCCAACTCTTCTGATCCTACAATCATGCTCTTCCATGTTTCATTTGAAGCAAATTCAAGCTCACATGACTTGCACTGGCCTCATGAACCAAATCTTCCCGGCCAGCCGCGTCGTAGCCTTTTGTGCTCTCTCCGATGCCGGTGACATTCATTATGCCCATCTCGTTTTCGCTCAAATTGAAAACCCTAATTGCTTTTTGTGGAATACGATGATTAAGGGTTATTGCAGAGCTAAATGCCCTTCAATGGGGTTCTTGTTTTTCCGGCAAATGATTCGGAATCGAGTTGAATTGGACTGTGGGAGCTTTGTTTCTGCGCTCAAGGTGTGCGGCCAATTTTCCGGGAAAGCAATAAGAATGGCGGTGCATTCTGTGGTTTGGAAGTTGGGGTTTGGTTCTGAATTGCTGGTTCAAAATGGATTGATTCAGTACTATGTTGAAACTGGGTGTATTGGTTTTGCACGCCAAGTGTTTGATGAAAGTTCTGTGAAGGATGTTGTTACTTGGACGACGATGATCAATGGATACACAACGAACAATTGTTTGGATGAGGCTATAATGTTGTTCGATATGATGTCGTCGAGTAACGTTGAGCCGAATGAGGTCACTATGATTGCTTTGCTTTCTGCTTGCTCGCAGAAGGGAGATTATGTAATGGGGAGGTCACTTCATGAACTCATAAAAAGGAAGAACATAAGCTCCAGTGTTAATTTGGTCAATACCATGTTGGATATTAGTTCAAAGTGA

Coding sequence (CDS)

ATGAAACCCCTCTTCTCTTCCGTTCAAAACCCATCTCGATTTTCAATCTTCCCGTTCAAACTCACCTTCAAAATCCTCCATTCTTTCCGACCACTCTCATCATCGGCAGCCGCCGGAAAACCCAAATGGAATTCACTCACCAATGTCTTCATTACCAACCCAACTCTTCTGATCCTACAATCATGCTCTTCCATGTTTCATTTGAAGCAAATTCAAGCTCACATGACTTGCACTGGCCTCATGAACCAAATCTTCCCGGCCAGCCGCGTCGTAGCCTTTTGTGCTCTCTCCGATGCCGGTGACATTCATTATGCCCATCTCGTTTTCGCTCAAATTGAAAACCCTAATTGCTTTTTGTGGAATACGATGATTAAGGGTTATTGCAGAGCTAAATGCCCTTCAATGGGGTTCTTGTTTTTCCGGCAAATGATTCGGAATCGAGTTGAATTGGACTGTGGGAGCTTTGTTTCTGCGCTCAAGGTGTGCGGCCAATTTTCCGGGAAAGCAATAAGAATGGCGGTGCATTCTGTGGTTTGGAAGTTGGGGTTTGGTTCTGAATTGCTGGTTCAAAATGGATTGATTCAGTACTATGTTGAAACTGGGTGTATTGGTTTTGCACGCCAAGTGTTTGATGAAAGTTCTGTGAAGGATGTTGTTACTTGGACGACGATGATCAATGGATACACAACGAACAATTGTTTGGATGAGGCTATAATGTTGTTCGATATGATGTCGTCGAGTAACGTTGAGCCGAATGAGGTCACTATGATTGCTTTGCTTTCTGCTTGCTCGCAGAAGGGAGATTATGTAATGGGGAGGTCACTTCATGAACTCATAAAAAGGAAGAACATAAGCTCCAGTGTTAATTTGGTCAATACCATGTTGGATATTAGTTCAAAGTGA

Protein sequence

MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLWNTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK
Homology
[Close]
BLAST of Carg22174 vs. NCBI nr
Match: XP_022960464.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 594.7 bits (1532), Expect = 1.7e-166
Identity = 293/300 (97.67%), Postives = 297/300 (99.00%), Query Frame = 0 

Query: 1   MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60
           MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ
Sbjct: 1   MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60

Query: 61  SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120
           SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW
Sbjct: 61  SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120

Query: 121 NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWK 180
           NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQF+GKA+RMAVHSVVWK
Sbjct: 121 NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFAGKAVRMAVHSVVWK 180

Query: 181 LGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML 240
           LGFGSELLVQNGLIQYYVE GCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML
Sbjct: 181 LGFGSELLVQNGLIQYYVEIGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML 240

Query: 241 FDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 300
           FD+MSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLD+  K
Sbjct: 241 FDLMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDMYVK 300

[Close]
BLAST of Carg22174 vs. NCBI nr
Match: XP_023513845.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 589.3 bits (1518), Expect = 7.2e-165
Identity = 289/300 (96.33%), Postives = 295/300 (98.33%), Query Frame = 0 

Query: 1   MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60
           MKPLFSSVQNPSRFSIFP K TFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ
Sbjct: 1   MKPLFSSVQNPSRFSIFPLKFTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60

Query: 61  SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120
           SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW
Sbjct: 61  SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120

Query: 121 NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWK 180
           NTMIKGYCRA+CPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQF+GKA+RMAVHSV+WK
Sbjct: 121 NTMIKGYCRARCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFAGKAVRMAVHSVIWK 180

Query: 181 LGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML 240
           LGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML
Sbjct: 181 LGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML 240

Query: 241 FDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 300
           FD+M SSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLD+  K
Sbjct: 241 FDLMLSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDMYVK 300

[Close]
BLAST of Carg22174 vs. NCBI nr
Match: XP_023004481.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 577.4 bits (1487), Expect = 2.8e-161
Identity = 286/300 (95.33%), Postives = 291/300 (97.00%), Query Frame = 0 

Query: 1   MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60
           MKPLFSSVQN SRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ
Sbjct: 1   MKPLFSSVQNSSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60

Query: 61  SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120
           SCSSMFHLKQIQAHM CTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW
Sbjct: 61  SCSSMFHLKQIQAHMICTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120

Query: 121 NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWK 180
           NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALK CG F+GKAIRMAVHSVVWK
Sbjct: 121 NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKACGHFAGKAIRMAVHSVVWK 180

Query: 181 LGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML 240
           LGFGS LLVQNGLIQ+YVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNN LDEA+ML
Sbjct: 181 LGFGSGLLVQNGLIQFYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNYLDEAVML 240

Query: 241 FDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 300
           FD+M SSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLD+  K
Sbjct: 241 FDLMLSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDMYVK 300

[Close]
BLAST of Carg22174 vs. NCBI nr
Match: XP_008451419.1 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis melo])

HSP 1 Score: 483.0 bits (1242), Expect = 7.2e-133
Identity = 234/300 (78.00%), Postives = 263/300 (87.67%), Query Frame = 0 

Query: 1   MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60
           MKP FSS+QNPS  SIFP  L  KILHSFRPLS+S++AGKPKWNSL+NVFI+NPTLLILQ
Sbjct: 1   MKPFFSSIQNPSHISIFPLNLAVKILHSFRPLSTSSSAGKPKWNSLSNVFISNPTLLILQ 60

Query: 61  SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120
           SCSSMF LKQIQAHMTCTGLM+QIFPASR++AFCALSD+GDIHYAHL+F Q E+PNCF W
Sbjct: 61  SCSSMFQLKQIQAHMTCTGLMSQIFPASRLLAFCALSDSGDIHYAHLIFDQTEHPNCFFW 120

Query: 121 NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWK 180
           NTMIKGYC+A  PS+GF FFRQMIRNR E DCGSFV ALK CGQF+ K + MAVHSV+WK
Sbjct: 121 NTMIKGYCQANYPSLGFSFFRQMIRNRAEFDCGSFVFALKACGQFAEKIVGMAVHSVIWK 180

Query: 181 LGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML 240
           LGF SELLV+NGLIQ YVETGC+GFARQVFDESS+KDVVTWTTMINGY  +N LDEAI L
Sbjct: 181 LGFDSELLVRNGLIQNYVETGCLGFARQVFDESSIKDVVTWTTMINGYARSNWLDEAIAL 240

Query: 241 FDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 300
           F+ M SS+VEPNEVTMIALLSACSQKGD VMG++LHE I+ K I+ SVNL+N MLD+  K
Sbjct: 241 FNSMLSSDVEPNEVTMIALLSACSQKGDSVMGKTLHEHIRGKGITCSVNLLNAMLDMYVK 300

[Close]
BLAST of Carg22174 vs. NCBI nr
Match: XP_022150160.1 (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Momordica charantia])

HSP 1 Score: 476.1 bits (1224), Expect = 8.8e-131
Identity = 239/301 (79.40%), Postives = 259/301 (86.05%), Query Frame = 0 

Query: 1   MKPLF-SSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLIL 60
           MKPLF SS+QNP++F IFP  L  +I H  R LSSS +AGKPKWNSL NVFI+NPTLLIL
Sbjct: 1   MKPLFSSSIQNPTQFLIFPLNLRLQIPHFLRSLSSSTSAGKPKWNSLANVFISNPTLLIL 60

Query: 61  QSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFL 120
           QSCSSMF LKQI AHMTCTGLMNQIFPASRVVAFCALSD+GD+ YAH VFA+IE PNCFL
Sbjct: 61  QSCSSMFQLKQIHAHMTCTGLMNQIFPASRVVAFCALSDSGDMRYAHFVFARIEKPNCFL 120

Query: 121 WNTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVW 180
           WNTMIKGYC A   SMGF FFRQMIRNRVELDCGSFV ALK CGQF+G+   MAVH V+W
Sbjct: 121 WNTMIKGYCSAGNRSMGFSFFRQMIRNRVELDCGSFVFALKACGQFAGEIEGMAVHCVIW 180

Query: 181 KLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIM 240
           KLGF SELLV+NGLIQYYVETG + FARQVFDESSVKDVVTWTTMINGYTT+NCLDEAI 
Sbjct: 181 KLGFDSELLVRNGLIQYYVETGYLFFARQVFDESSVKDVVTWTTMINGYTTHNCLDEAIT 240

Query: 241 LFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISS 300
           LFD M SS+VEPNEVTMI LLSACSQKGD +MGR+LHE I RKNI  SVNL+NTMLD+  
Sbjct: 241 LFDSMLSSDVEPNEVTMITLLSACSQKGDSIMGRTLHEYIMRKNIRCSVNLLNTMLDMYV 300

[Close]
BLAST of Carg22174 vs. TAIR10
Match: AT2G22410.1 (SLOW GROWTH 1)

HSP 1 Score: 178.7 bits (452), Expect = 5.3e-45
Identity = 95/261 (36.40%), Postives = 148/261 (56.70%), Query Frame = 0 

Query: 43  WNSLTNVFITNPTLLILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDI 102
           WNS  +  + NP L +L+ C  + HLKQIQA M   GL+   F +SR++AFCALS++  +
Sbjct: 44  WNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYL 103

Query: 103 HYAHLVFAQIENPNCFLWNTMIKGYCRAKCPSMGFLFFRQMIRN---RVELDCGSFVSAL 162
            Y+  +   IENPN F WN  I+G+  ++ P   FL ++QM+R+       D  ++    
Sbjct: 104 DYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLF 163

Query: 163 KVCGQFSGKAIRMAVHSVVWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVV 222
           KVC      ++   +   V KL       V N  I  +   G +  AR+VFDES V+D+V
Sbjct: 164 KVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLV 223

Query: 223 TWTTMINGYTTNNCLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELI 282
           +W  +INGY      ++AI ++ +M S  V+P++VTMI L+S+CS  GD   G+  +E +
Sbjct: 224 SWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYV 283

Query: 283 KRKNISSSVNLVNTMLDISSK 301
           K   +  ++ LVN ++D+ SK
Sbjct: 284 KENGLRMTIPLVNALMDMFSK 304

[Close]
BLAST of Carg22174 vs. TAIR10
Match: AT3G22690.1 (Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-33
Identity = 82/279 (29.39%), Postives = 146/279 (52.33%), Query Frame = 0 

Query: 25  ILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQSCSSMFHLKQIQAHMTCTGLMNQI 84
           +LH    + ++    KP  + L     T  T   L++C ++  LK     +T  GL N +
Sbjct: 7   VLHLSPMVLATTTTTKP--SLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDV 66

Query: 85  FPASRVVA-FCALSDAGDIHYAHLVFAQIEN-PNCFLWNTMIKGYCRAKCPSMGFLFFRQ 144
              +++VA  C L     + +A  VF   E+   CF++N++I+GY  +   +   L F +
Sbjct: 67  STITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLR 126

Query: 145 MIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWKLGFGSELLVQNGLIQYYVETGC 204
           M+ + +  D  +F   L  C +   K   + +H ++ K+G+  +L VQN L+ +Y E G 
Sbjct: 127 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 186

Query: 205 IGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAI-MLFDMMSSSNVEPNEVTMIALLS 264
           +  AR+VFDE S ++VV+WT+MI GY   +   +A+ + F M+    V PN VTM+ ++S
Sbjct: 187 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 246

Query: 265 ACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 301
           AC++  D   G  ++  I+   I  +  +V+ ++D+  K
Sbjct: 247 ACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK 283

[Close]
BLAST of Carg22174 vs. TAIR10
Match: AT3G05240.1 (mitochondrial editing factor 19)

HSP 1 Score: 133.7 bits (335), Expect = 1.9e-31
Identity = 74/256 (28.91%), Postives = 129/256 (50.39%), Query Frame = 0 

Query: 54  PTLLILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFC-ALSDAGDIHYAHLVFAQI 113
           P L  L++C S+  L Q+   M  + ++  + P SR++ FC    +  ++ YA  VF  I
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 114 ENPNCFLWNTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRM 173
           + P+ ++WN+MI+GY  +  P    +F+++M+R     D  +F   LK C          
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 174 AVHSVVWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNN 233
            VH  V K GF   + V   L+  Y+  G + +  +VF++    +VV W ++I+G+  NN
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 234 CLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIK--------RKNI 293
              +AI  F  M S+ V+ NE  M+ LL AC +  D V G+  H  ++        +  +
Sbjct: 188 RFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKV 247

Query: 294 SSSVNLVNTMLDISSK 301
             +V L  +++D+ +K
Sbjct: 248 GFNVILATSLIDMYAK 263

[Close]
BLAST of Carg22174 vs. TAIR10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 133.3 bits (334), Expect = 2.5e-31
Identity = 78/249 (31.33%), Postives = 135/249 (54.22%), Query Frame = 0 

Query: 56  LLILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAF--CALSDAGDIHYAHLVFAQIE 115
           LL     SS+  L+QI A     G+        + + F   +L     + YAH VF++IE
Sbjct: 21  LLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIE 80

Query: 116 NP-NCFLWNTMIKGYCRAKCPSMGFLFFRQM-IRNRVELDCGSFVSALKVCGQFSGKAIR 175
            P N F+WNT+I+GY         F  +R+M +   VE D  ++   +K     +   + 
Sbjct: 81  KPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLG 140

Query: 176 MAVHSVVWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTN 235
             +HSVV + GFGS + VQN L+  Y   G +  A +VFD+   KD+V W ++ING+  N
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200

Query: 236 NCLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLV 295
              +EA+ L+  M+S  ++P+  T+++LLSAC++ G   +G+ +H  + +  ++ +++  
Sbjct: 201 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 260

Query: 296 NTMLDISSK 301
           N +LD+ ++
Sbjct: 261 NVLLDLYAR 269

[Close]
BLAST of Carg22174 vs. TAIR10
Match: AT3G04750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-29
Identity = 84/276 (30.43%), Postives = 144/276 (52.17%), Query Frame = 0 

Query: 29  FRPLSSSAAAGKPKWNSLTNVFITNPTLLILQSCSSMFHLKQIQAHMTCTGLMNQIFPAS 88
           FR   +   +   KW+ + ++ + + +L++L++C+S    KQ+ A +    L+   FP S
Sbjct: 11  FRLFGTECGSKTTKWDPVQSLQLNHQSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMS 70

Query: 89  RVVAFCALSDAGDIHYAHLVFAQI-ENPNCFLWNTMIKGYCRAKCPSMGFLFFRQMIRNR 148
           R++ F A++   ++  A L+F     NPN F++NTMI     +K    G   +  MIR+R
Sbjct: 71  RLIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKNECFG--LYSSMIRHR 130

Query: 149 VELDCGSFVSALKVCGQFSGKAIRMAVHSVV-WKLGFGSELLVQNGLIQYYVETGCIGFA 208
           V  D  +F+  +K    F  +  ++  H +V   L  G+ L   N L+++Y+E G  G A
Sbjct: 131 VSPDRQTFLYLMK-ASSFLSEVKQIHCHIIVSGCLSLGNYL--WNSLVKFYMELGNFGVA 190

Query: 209 RQVFDESSVKDVVTWTTMINGYTTNNCLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQK 268
            +VF      DV ++  MI GY       EA+ L+  M S  +EP+E T+++LL  C   
Sbjct: 191 EKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHL 250

Query: 269 GDYVMGRSLHELIKRKN--ISSSVNLVNTMLDISSK 301
            D  +G+ +H  I+R+    SS++ L N +LD+  K
Sbjct: 251 SDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFK 281

[Close]
BLAST of Carg22174 vs. Swiss-Prot
Match: sp|Q9SJZ3|PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 9.5e-44
Identity = 95/261 (36.40%), Postives = 148/261 (56.70%), Query Frame = 0 

Query: 43  WNSLTNVFITNPTLLILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDI 102
           WNS  +  + NP L +L+ C  + HLKQIQA M   GL+   F +SR++AFCALS++  +
Sbjct: 44  WNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYL 103

Query: 103 HYAHLVFAQIENPNCFLWNTMIKGYCRAKCPSMGFLFFRQMIRN---RVELDCGSFVSAL 162
            Y+  +   IENPN F WN  I+G+  ++ P   FL ++QM+R+       D  ++    
Sbjct: 104 DYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLF 163

Query: 163 KVCGQFSGKAIRMAVHSVVWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVV 222
           KVC      ++   +   V KL       V N  I  +   G +  AR+VFDES V+D+V
Sbjct: 164 KVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLV 223

Query: 223 TWTTMINGYTTNNCLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELI 282
           +W  +INGY      ++AI ++ +M S  V+P++VTMI L+S+CS  GD   G+  +E +
Sbjct: 224 SWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYV 283

Query: 283 KRKNISSSVNLVNTMLDISSK 301
           K   +  ++ LVN ++D+ SK
Sbjct: 284 KENGLRMTIPLVNALMDMFSK 304

[Close]
BLAST of Carg22174 vs. Swiss-Prot
Match: sp|Q9LUJ2|PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.9e-32
Identity = 82/279 (29.39%), Postives = 146/279 (52.33%), Query Frame = 0 

Query: 25  ILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQSCSSMFHLKQIQAHMTCTGLMNQI 84
           +LH    + ++    KP  + L     T  T   L++C ++  LK     +T  GL N +
Sbjct: 7   VLHLSPMVLATTTTTKP--SLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDV 66

Query: 85  FPASRVVA-FCALSDAGDIHYAHLVFAQIEN-PNCFLWNTMIKGYCRAKCPSMGFLFFRQ 144
              +++VA  C L     + +A  VF   E+   CF++N++I+GY  +   +   L F +
Sbjct: 67  STITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLR 126

Query: 145 MIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWKLGFGSELLVQNGLIQYYVETGC 204
           M+ + +  D  +F   L  C +   K   + +H ++ K+G+  +L VQN L+ +Y E G 
Sbjct: 127 MMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGE 186

Query: 205 IGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAI-MLFDMMSSSNVEPNEVTMIALLS 264
           +  AR+VFDE S ++VV+WT+MI GY   +   +A+ + F M+    V PN VTM+ ++S
Sbjct: 187 LDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVIS 246

Query: 265 ACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 301
           AC++  D   G  ++  I+   I  +  +V+ ++D+  K
Sbjct: 247 ACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMK 283

[Close]
BLAST of Carg22174 vs. Swiss-Prot
Match: sp|Q9MA95|PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-30
Identity = 74/256 (28.91%), Postives = 129/256 (50.39%), Query Frame = 0 

Query: 54  PTLLILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFC-ALSDAGDIHYAHLVFAQI 113
           P L  L++C S+  L Q+   M  + ++  + P SR++ FC    +  ++ YA  VF  I
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 114 ENPNCFLWNTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRM 173
           + P+ ++WN+MI+GY  +  P    +F+++M+R     D  +F   LK C          
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 174 AVHSVVWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNN 233
            VH  V K GF   + V   L+  Y+  G + +  +VF++    +VV W ++I+G+  NN
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 234 CLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIK--------RKNI 293
              +AI  F  M S+ V+ NE  M+ LL AC +  D V G+  H  ++        +  +
Sbjct: 188 RFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKV 247

Query: 294 SSSVNLVNTMLDISSK 301
             +V L  +++D+ +K
Sbjct: 248 GFNVILATSLIDMYAK 263

[Close]
BLAST of Carg22174 vs. Swiss-Prot
Match: sp|A8MQA3|PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 4.6e-30
Identity = 78/249 (31.33%), Postives = 135/249 (54.22%), Query Frame = 0 

Query: 56  LLILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAF--CALSDAGDIHYAHLVFAQIE 115
           LL     SS+  L+QI A     G+        + + F   +L     + YAH VF++IE
Sbjct: 21  LLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIE 80

Query: 116 NP-NCFLWNTMIKGYCRAKCPSMGFLFFRQM-IRNRVELDCGSFVSALKVCGQFSGKAIR 175
            P N F+WNT+I+GY         F  +R+M +   VE D  ++   +K     +   + 
Sbjct: 81  KPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLG 140

Query: 176 MAVHSVVWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTN 235
             +HSVV + GFGS + VQN L+  Y   G +  A +VFD+   KD+V W ++ING+  N
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200

Query: 236 NCLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLV 295
              +EA+ L+  M+S  ++P+  T+++LLSAC++ G   +G+ +H  + +  ++ +++  
Sbjct: 201 GKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSS 260

Query: 296 NTMLDISSK 301
           N +LD+ ++
Sbjct: 261 NVLLDLYAR 269

[Close]
BLAST of Carg22174 vs. Swiss-Prot
Match: sp|Q9SR01|PP212_ARATH (Pentatricopeptide repeat-containing protein At3g04750, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E81 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.6e-28
Identity = 84/276 (30.43%), Postives = 144/276 (52.17%), Query Frame = 0 

Query: 29  FRPLSSSAAAGKPKWNSLTNVFITNPTLLILQSCSSMFHLKQIQAHMTCTGLMNQIFPAS 88
           FR   +   +   KW+ + ++ + + +L++L++C+S    KQ+ A +    L+   FP S
Sbjct: 11  FRLFGTECGSKTTKWDPVQSLQLNHQSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMS 70

Query: 89  RVVAFCALSDAGDIHYAHLVFAQI-ENPNCFLWNTMIKGYCRAKCPSMGFLFFRQMIRNR 148
           R++ F A++   ++  A L+F     NPN F++NTMI     +K    G   +  MIR+R
Sbjct: 71  RLIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISAVSSSKNECFG--LYSSMIRHR 130

Query: 149 VELDCGSFVSALKVCGQFSGKAIRMAVHSVV-WKLGFGSELLVQNGLIQYYVETGCIGFA 208
           V  D  +F+  +K    F  +  ++  H +V   L  G+ L   N L+++Y+E G  G A
Sbjct: 131 VSPDRQTFLYLMK-ASSFLSEVKQIHCHIIVSGCLSLGNYL--WNSLVKFYMELGNFGVA 190

Query: 209 RQVFDESSVKDVVTWTTMINGYTTNNCLDEAIMLFDMMSSSNVEPNEVTMIALLSACSQK 268
            +VF      DV ++  MI GY       EA+ L+  M S  +EP+E T+++LL  C   
Sbjct: 191 EKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHL 250

Query: 269 GDYVMGRSLHELIKRKN--ISSSVNLVNTMLDISSK 301
            D  +G+ +H  I+R+    SS++ L N +LD+  K
Sbjct: 251 SDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFK 281

[Close]
BLAST of Carg22174 vs. TrEMBL
Match: tr|A0A1S3BSJ4|A0A1S3BSJ4_CUCME (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492719 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 4.8e-133
Identity = 234/300 (78.00%), Postives = 263/300 (87.67%), Query Frame = 0 

Query: 1   MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60
           MKP FSS+QNPS  SIFP  L  KILHSFRPLS+S++AGKPKWNSL+NVFI+NPTLLILQ
Sbjct: 1   MKPFFSSIQNPSHISIFPLNLAVKILHSFRPLSTSSSAGKPKWNSLSNVFISNPTLLILQ 60

Query: 61  SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120
           SCSSMF LKQIQAHMTCTGLM+QIFPASR++AFCALSD+GDIHYAHL+F Q E+PNCF W
Sbjct: 61  SCSSMFQLKQIQAHMTCTGLMSQIFPASRLLAFCALSDSGDIHYAHLIFDQTEHPNCFFW 120

Query: 121 NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWK 180
           NTMIKGYC+A  PS+GF FFRQMIRNR E DCGSFV ALK CGQF+ K + MAVHSV+WK
Sbjct: 121 NTMIKGYCQANYPSLGFSFFRQMIRNRAEFDCGSFVFALKACGQFAEKIVGMAVHSVIWK 180

Query: 181 LGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML 240
           LGF SELLV+NGLIQ YVETGC+GFARQVFDESS+KDVVTWTTMINGY  +N LDEAI L
Sbjct: 181 LGFDSELLVRNGLIQNYVETGCLGFARQVFDESSIKDVVTWTTMINGYARSNWLDEAIAL 240

Query: 241 FDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 300
           F+ M SS+VEPNEVTMIALLSACSQKGD VMG++LHE I+ K I+ SVNL+N MLD+  K
Sbjct: 241 FNSMLSSDVEPNEVTMIALLSACSQKGDSVMGKTLHEHIRGKGITCSVNLLNAMLDMYVK 300

[Close]
BLAST of Carg22174 vs. TrEMBL
Match: tr|A0A0A0K8Z0|A0A0A0K8Z0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390210 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 2.5e-129
Identity = 229/300 (76.33%), Postives = 257/300 (85.67%), Query Frame = 0 

Query: 1   MKPLFSSVQNPSRFSIFPFKLTFKILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLLILQ 60
           MKP FSS QNPS FS FP  L   ILHSFRPLS+S++ GKPKWNSL+NVFI+NPTLLILQ
Sbjct: 1   MKPFFSSFQNPSHFSFFPLNLALNILHSFRPLSTSSSPGKPKWNSLSNVFISNPTLLILQ 60

Query: 61  SCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLW 120
           SCSSMF LKQIQAH+TCTGLMNQIFPASR++AFCALSD+GDIHYAHL+F Q E PNCF W
Sbjct: 61  SCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFW 120

Query: 121 NTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWK 180
           NTMIKGYC+A  PSMGF FFRQMIRNR E D GSFV ALK CGQF+ K + MAVHSV+WK
Sbjct: 121 NTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMAVHSVIWK 180

Query: 181 LGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIML 240
            GF S+L VQNGLIQ YVETGC+GFARQ+FDESSVKDVVTWTTMINGY  NN LDEAI L
Sbjct: 181 RGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIAL 240

Query: 241 FDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 300
           F+ M SS+V+PNEVTMIALLSACSQKGD  MG++LHE I+RK+I+ S+NL+N MLD+  K
Sbjct: 241 FNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVK 300

[Close]
BLAST of Carg22174 vs. TrEMBL
Match: tr|A0A2P4I887|A0A2P4I887_QUESU (Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_06359 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 3.5e-91
Identity = 172/303 (56.77%), Postives = 221/303 (72.94%), Query Frame = 0 

Query: 1   MKPLFSSVQNPSRFSIFPFKLTFKI-LH--SFRPLSSSAAAGKPKWNSLTNVFITNPTLL 60
           MKPL  S QN     +    L  ++ LH  S RP  SS +  K KWNS TNV ITNPTLL
Sbjct: 1   MKPLLPSSQNSISLLLSALTLRSQLHLHSLSLRPF-SSISTNKAKWNSTTNVIITNPTLL 60

Query: 61  ILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNC 120
           I++SC++M  LKQIQAHMT T L+   FP SRV+AFCAL+D+GDI YA ++F+QIE PN 
Sbjct: 61  IMESCTTMLQLKQIQAHMTRTALITHTFPVSRVLAFCALADSGDIQYARVLFSQIERPNT 120

Query: 121 FLWNTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSV 180
           ++WNTMI+GYC+AK P++GF FFRQM R  VE+D  SFV  LK C QF       +VH  
Sbjct: 121 YMWNTMIRGYCKAKIPTIGFSFFRQMARECVEMDRRSFVFVLKACEQFCTVLEGESVHCW 180

Query: 181 VWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEA 240
           +WK+GF S+L+V+NGL+ +Y E GC+ FAR+VFD S  +DVVTWT+MI+GY  +NC +EA
Sbjct: 181 IWKMGFDSDLVVRNGLVHFYAECGCLNFAREVFDRSFERDVVTWTSMIDGYVVHNCSEEA 240

Query: 241 IMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDI 300
           + LF+ M  S+VEPNEVTMIA+LSACS KGD  MG+S+HE IK++N++ S+NL N MLD+
Sbjct: 241 LKLFNSMLMSDVEPNEVTMIAVLSACSLKGDLTMGKSIHEYIKKRNVNYSLNLQNAMLDM 300

[Close]
BLAST of Carg22174 vs. TrEMBL
Match: tr|A0A2P6PWD1|A0A2P6PWD1_ROSCH (Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0292361 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.2e-90
Identity = 165/279 (59.14%), Postives = 214/279 (76.70%), Query Frame = 0 

Query: 24  KILHSF--RPLSSSAAAGKPKWNSLTNVFITNPTLLILQSCSSMFHLKQIQAHMTCTGLM 83
           ++LHS   RP+S    A KPKWNS TNV ITNPTLLI++SC++M  LKQIQA MTCTGL+
Sbjct: 17  QVLHSLHQRPIS----ANKPKWNSKTNVIITNPTLLIMESCTNMLQLKQIQAQMTCTGLI 76

Query: 84  NQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNCFLWNTMIKGYCRAKCPSMGFLFFR 143
           +  FP SRV+AFCA++D GDIHYA+L+F +IE PN ++WNTMI+GY +A+  + GF FF 
Sbjct: 77  HHTFPVSRVLAFCAIADGGDIHYANLIFTRIEKPNTYMWNTMIRGYSKAQVNTTGFSFFG 136

Query: 144 QMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSVVWKLGFGSELLVQNGLIQYYVETG 203
           +M+R RVE+DC SFV ALK CG         +VH V+WK+GFGS+LLV+NGL+ YY E G
Sbjct: 137 RMVRERVEMDCRSFVFALKACGLLGD-----SVHCVIWKMGFGSDLLVRNGLVHYYAEAG 196

Query: 204 CIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEAIMLFDMMSSSNVEPNEVTMIALLS 263
            +  AR+VFDES V+DVVTWTTMI+GY      +EA+ LFD M  S+VEPNEVTMIA+LS
Sbjct: 197 SVSHARKVFDESPVRDVVTWTTMIDGYAGCGYSNEAVELFDEMLFSDVEPNEVTMIAVLS 256

Query: 264 ACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDISSK 301
           ACS KGD  MG+S+HE +++KN++ S+NL+N +LD+  K
Sbjct: 257 ACSNKGDIGMGKSIHEYVRKKNVNCSLNLLNALLDMYVK 286

[Close]
BLAST of Carg22174 vs. TrEMBL
Match: tr|A0A2I4FPW6|A0A2I4FPW6_9ROSI (pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109001017 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 5.5e-89
Identity = 170/303 (56.11%), Postives = 224/303 (73.93%), Query Frame = 0 

Query: 1   MKPLFSSVQNPSRFSIFPFKLTFK---ILHSFRPLSSSAAAGKPKWNSLTNVFITNPTLL 60
           MKP+    QN S   +F    T +   +LH  RP SS++   +PKWNS TNV ITNPTLL
Sbjct: 9   MKPILPCTQN-STSLLFLSAFTLRPQVVLHFLRPFSSTSTR-RPKWNSTTNVIITNPTLL 68

Query: 61  ILQSCSSMFHLKQIQAHMTCTGLMNQIFPASRVVAFCALSDAGDIHYAHLVFAQIENPNC 120
           I++SC++M  LKQIQA MT  GL+   FP SRVVAFCAL+D GD+ YAH +F+QIE PN 
Sbjct: 69  IMESCTTMLQLKQIQARMTVNGLITHTFPVSRVVAFCALADFGDVDYAHELFSQIEKPNT 128

Query: 121 FLWNTMIKGYCRAKCPSMGFLFFRQMIRNRVELDCGSFVSALKVCGQFSGKAIRMAVHSV 180
           ++WNTMI+GY +AK P++GF FFR+M+R RVE+D  S V ALK+C QF   +   +VH  
Sbjct: 129 YIWNTMIRGYGKAKIPTVGFWFFRRMVRERVEMDRRSPVFALKLCEQFCAISEGESVHCR 188

Query: 181 VWKLGFGSELLVQNGLIQYYVETGCIGFARQVFDESSVKDVVTWTTMINGYTTNNCLDEA 240
           + K+GF S+L+VQNGL+ +Y E GC+ FAR++FDE+ VKDVVTWT++I+G+  +NC DEA
Sbjct: 189 ICKIGFSSDLIVQNGLVHFYAERGCLDFARKMFDETLVKDVVTWTSIIDGHVVHNCSDEA 248

Query: 241 IMLFDMMSSSNVEPNEVTMIALLSACSQKGDYVMGRSLHELIKRKNISSSVNLVNTMLDI 300
           + LF++M  S+VEPNEVTMIA+LSACS KG+  MG+S+HE I++K IS S NL N MLD+
Sbjct: 249 LELFNLMLLSDVEPNEVTMIAVLSACSLKGELSMGKSIHEYIQKKKISWSPNLQNAMLDM 308

The following BLAST results are available for this feature:
BLAST of Carg22174 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022960464.11.7e-16697.67pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucur... [more]
XP_023513845.17.2e-16596.33pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucur... [more]
XP_023004481.12.8e-16195.33pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucur... [more]
XP_008451419.17.2e-13378.00PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g... [more]
XP_022150160.18.8e-13179.40pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Momor... [more]
BLAST of Carg22174 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G22410.15.3e-4536.40SLOW GROWTH 1[more]
AT3G22690.12.7e-3329.39Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repe... [more]
AT3G05240.11.9e-3128.91mitochondrial editing factor 19[more]
AT4G21065.12.5e-3131.33Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G04750.15.3e-2930.43Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Carg22174 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SJZ3|PP169_ARATH9.5e-4436.40Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop... [more]
sp|Q9LUJ2|PP249_ARATH4.9e-3229.39Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
sp|Q9MA95|PP214_ARATH3.5e-3028.91Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
sp|A8MQA3|PP330_ARATH4.6e-3031.33Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX... [more]
sp|Q9SR01|PP212_ARATH9.6e-2830.43Pentatricopeptide repeat-containing protein At3g04750, mitochondrial OS=Arabidop... [more]
BLAST of Carg22174 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BSJ4|A0A1S3BSJ4_CUCME4.8e-13378.00LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g22410, mito... [more]
tr|A0A0A0K8Z0|A0A0A0K8Z0_CUCSA2.5e-12976.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390210 PE=4 SV=1[more]
tr|A0A2P4I887|A0A2P4I887_QUESU3.5e-9156.77Pentatricopeptide repeat-containing protein, mitochondrial OS=Quercus suber OX=5... [more]
tr|A0A2P6PWD1|A0A2P6PWD1_ROSCH2.2e-9059.14Putative tetratricopeptide-like helical domain-containing protein OS=Rosa chinen... [more]
tr|A0A2I4FPW6|A0A2I4FPW6_9ROSI5.5e-8956.11pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like isofor... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22174-RACarg22174-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 74..177
e-value: 5.4E-13
score: 50.6
coord: 184..300
e-value: 2.5E-22
score: 81.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 216..264
e-value: 2.5E-13
score: 49.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 119..147
e-value: 1.4E-6
score: 28.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 219..253
e-value: 2.1E-9
score: 35.0
coord: 119..152
e-value: 6.6E-8
score: 30.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 116..150
score: 10.282
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 252..286
score: 7.991
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 217..251
score: 12.156
NoneNo IPR availablePANTHERPTHR24015:SF514SUBFAMILY NOT NAMEDcoord: 236..300
NoneNo IPR availablePANTHERPTHR24015:SF514SUBFAMILY NOT NAMEDcoord: 64..238
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 236..300
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 64..238