Carg21873 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21873
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	pentatricopeptide repeat-containing protein At5g42310, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_111 : 112474 .. 117026 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCATTCAGCCTTCATTTGGATTGCGTTCTGGAGCCGCCGCTGCCTTCACAACTTTCCCGATCACCCGATTCAATTTTCCGATAACATGCTTCTTCTGTCACCATTGCCTCTCTCTACTCGCTTTCCTGCAACTCAATTACCTTCTCCCACCGCCTTCCTCCACCACCAGAACCCCCCTATCACTACCCACCTCTCATTTCCCATCATCTCCGCCGCCGCCGCCACCACCACCTCCTTCTCCTCCGTCGTCACCTGTTCCACTTCATCGGACGCGCTCGAGCTCGACGTTTTCGAAAACGACCACGTTTCTTTTCAGAGTCGTCGCTACGACTTCACTCCTCTCCTCGACTTCCTTTCCCGGTCTCCGGCCTATCCGAAGTCCGATTCCGATTCGGAGGTGGAATTCGACTCTGTTTTGGACTCTGATTCTGAGTCTGATAAGGCTTCTCCGACCTCCCTTGACCCTACCGAGTTCCAGCTAGCCGAGACCTACAGGGCCGTGCCGGCGCCTCTATGGCACTCTCTGCTTAAGTCTCTTTGCGCTTCTTCCTCTTCGATTGGGCTAGGTTACGCGGTTGTTTTGTGGCTTCAGAAGCATAATCTGTGCTTCTCTTACGAATTGCTTTACTCGATTCTCATTCATGCTCTTGGCCGCTCTGAGAAGCTCTATGAAGCTTTCATTCTCTCCCAGAGCCAAACCCTAACCCCATTAACGTATAATGCTCTCATTGGTGCCTGTGCTCGCAATAACGATTCGGAGAAAGCTCTCAATCTGATATCAAGGATGCGACAGGATGGTTATCAATCTGATTTTGTCAATTATAGTTTGATAATTCAGTCGCTTACTCGCACCAATAAGATTGATGTTCCAATCTTGCAAAAGCTTTACGAAGAGATTGAGTCTGATAAAATTGAACTCGATGGGCAGCTCCTCAACGATATCATATTGGGCTTCGCGAAAGCTGGAGATCCTAACCGAGCTCTGTATTTCTTGTCCATGGTACAGGCGAGTGGTTTAAACCCCAAAACTTCTACGTTTGTTGCAATTATCTCTGCTTTGGGAAACTATGGGCGGACAGAGGAAGCTGAGGCTATCTTTGAGGAAATGAAGGAAGGTGGATTGAAACCAAGGATTAAGGCCTTCAATGCTCTTCTTAAAGGCTATGCTAAAAAGGGTTCTCTGAAAGAGGCAGAATCCATTGTTTCAGAGATGGAAAAGAGTGGATTATCACCGGATGAGCACACATATGGTCTTCTCGTTGATGCTTATGCAAATGTCGGGAGTTGGCAAAGTGCAAGACAATTGTTGAAACAAATGGAAGCTAGAAATGTACAGCCCAACACCTTCATTTTCAGTAGGATTTTAGCTAGTTATCGTGACCGGGGCGAATGGCAGAAAACGTTTGAAGTTTTGAGGGAAATGAAGAACTGCAATGTCAAACCTGATAGGCATTTTTACAATGTCATGATTGATACGTTTGGGAAGTTCAATTGCGTTGATCATGCCATGGAAACATATGAACGGATGCTCTCTGAGGGGATTGAACCCGATGTTGTTACTTGGAACACGCTTATAGATTGTCATCGTAAGCACGGATACCATGAAAGGGCTGCAGAGTTGTTCGAAGAAATGCAGGAACGTGGTTACTTTCCTTGTCCCACAACGTATAATATTATGATCAATTCATTAGGTGAGCAGGAAAAGTGGGACGAGGTGAAAATCTTGTTAGGAAAGATGCAGAGTCAGGGCTTACTTCCCAATGTGATAACATACACTACCCTTGTTGATATATATGGACAATCTGGAAGGTTTAATGACGCCATTGAGTGCTTGGAGGCCATGAAGTCTGCTGGACTGAAACCATCCTCAACAATGTATAATGCTTTAATCAATGCCTTTGCTCAAAAAGTATGTCATCCTTCCCACTTTTCATCTCACAAATTGTTTGGTATACATATTATTCTTTGAAAAATTGATGCTGATATTCACTGCTGAAGTTCCAATAAAAAGATACCCACTGTTGGAACATATTTCCCATGTATGGATAAGTTACTCGTTCATAAGTTCATACTTTTTTTCTCCATTTCTCATATACTGTTGTTCAACTGGACGGAAAAATTTGGAACAAAATAGTTTTATATATAGTTTCATTGCTTGAGAACATGATACGACCAGTTTACCATCTGATTTGGAGTTTTTGTATGTGAGTAATATATATATATATATTTTTTTTGTATAAATAGGCTCATCTGTCATTGGGCCACGATGAGATTCGCCTCCCGAATCATAGTTGAAATTATAAAATTTATATATCCAAATATATTGTGAGATCTCACATCGGTTGGGGAGGAGAACGAAACACTCTTTATAAAGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAAATCTTGAGGGAAAGCGCAGAGGACAATATTTGCTAGCGATGGGCTTGGGTGTTACGTATATATTTTAATTTGTTTCTTGAAAATCCATTTAGTGATCTTCCATTTTTATCATTTGGCAGGGTTTGTCAGAGCAGGCAGTAAATGCATATAGAGTCATGAGATCAGATGGACTAAAACCCAGTCTCTTGGCTCTTAATTCATTGATCAATGCATTTGGCGAGGATAGGAGAGACATTGAAGCCTTTACAATCTTGCAGTACATGAAGGAAAATGTAGGTGCATTATATTTACAATAACGTTTGCATATTTTTTATTCTTAATATCAAGAGTAAGGCTTATCCGTTCATCATTCGAACTTATTTGGTCCTACCTTCTACTGCAGGATGTGAAGCCTGACGTTGTCACATATACAACACTTATGAAAGCTTTGATTCGTGTTGAAAAGTTTGACAAGGTAGAATAACATGACCCTATAGCTGTTTTTCATAATTTGCTCGTGTTATTTTATGCATAAATTTTGCGTATTTGGCAAATATGTGTTAGAAACCACCACCCTATACAATGGTATGATATTGTCCACTTTGAGCATTAACTCTCATGGATTTGCTTTGGGTTTTCCCAAAAGGCCTCGTACCAATGGAGTTGTATTCCTTACCTATAAGCTCATGATCAACCCCTTTAATTATCCGACGTTGGACTCCTCTCCCAACAATCCTCATCAATCCTCCCCTCAAACAAAGTACATCATAGAGCCTCCCTTGAGGCTTATGGAGTCCTCGAACAGCCTTCCTTTAATCGAGGCTCGACTCCTTCTCTGGAGCTCTCAAACAAAGTACACCTTTTGTTCGACATTTGAGTCACTTTTGACTATATTTTCGAGTCTCACAACTTCTTTGTTCTACATTTGAGGATTCTATTGAAATGTCTAAGTTAATGACATGACTCTAATACCATGTTAGGAACCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATTAGCTCTCGTGACTTCGCTGCTTTTGGTTTTTCCAAAAGATCTCATACCAATAGGGATGTATTCCTTACTTAAACCCATGATCAACCCCTTAATTAGCCGATATGGGACTCTCCCAACAATCCTCAACAATATGACCTCCGATTGTTCATCACATTGGAGCCTACTCAATGTCTTCTACAATGTTTTCCGATGTTTTTGAGGGAGATATTGTGAAGATTAAATGTTAAAAAATGAAGCTGGACTAGTTTTGCAAATTGGATGCAAAACTTTTGATGTCTTAGCTTGTGCTAGTCGTCCCGGTTGCAGCATTTCTTATTTCTTATACGAACACATCATCGAATAGAAACTTGTGACGAATTGCTTTCTACAGCTCCCTGTGCTTGTTTCATCATATCACCCCGCAACCTCAAATGTCATGTTTTCAATTCTCACTTTTGAAAGAGAAAAAGAGAGAATGTTAAAGATTGAAAGTACATTATTTGAGTTTCAGGTTCCGGCTGTGTATGAAGAGATGATTTTGTCTGGATGTACACCTGATGGAAAGGCCAGAGCCATGTTGCGGTCTGCCCTCAAATACATGAAGCGTACACTAAGCTTATAGTTGGCCGCCTGATCATGTATCCATGCACTCTGTAGAACAAATTTGCAGGAGTTTATCAAACCAATACTCATAGGTACGTACCGAAGGCTTCAAGATGTGATGTTCTTGACAGTTTCATAATGAATTGGTATCAAAGTCCACAATTTCTTGGGAACTCATGTATTAATGTATGAATTAATGCTCATATTTTATGAATTAATGTTTTGCGTCTGCCCTGGAATGGTTTTGCAGGAATTGCCTATTCAAGCTTGAGTCATTTCTTATGACTTGGAGAAGAGAAAGGTTTGATCTTACACTAATAGTATGGCATTATACTATCAGCAAAAAGTTGACATTTCTAAAGTAGAACTGCCAATCACCCCTTAAATGATACAGCTCCACCGTACCGGCCGCCGGGTGCCGGTCTTTGAAACGCCAGGCAAATTCCCATCTATTGATAATTCTTGTATTATTGTTTATATAACATATTCACCATTCTTATGTCATACAGTAAAATGCAGAAGAAATAGTTGATCCAAGGACCTCAATATGTG

mRNA sequence

AATCATTCAGCCTTCATTTGGATTGCGTTCTGGAGCCGCCGCTGCCTTCACAACTTTCCCGATCACCCGATTCAATTTTCCGATAACATGCTTCTTCTGTCACCATTGCCTCTCTCTACTCGCTTTCCTGCAACTCAATTACCTTCTCCCACCGCCTTCCTCCACCACCAGAACCCCCCTATCACTACCCACCTCTCATTTCCCATCATCTCCGCCGCCGCCGCCACCACCACCTCCTTCTCCTCCGTCGTCACCTGTTCCACTTCATCGGACGCGCTCGAGCTCGACGTTTTCGAAAACGACCACGTTTCTTTTCAGAGTCGTCGCTACGACTTCACTCCTCTCCTCGACTTCCTTTCCCGGTCTCCGGCCTATCCGAAGTCCGATTCCGATTCGGAGGTGGAATTCGACTCTGTTTTGGACTCTGATTCTGAGTCTGATAAGGCTTCTCCGACCTCCCTTGACCCTACCGAGTTCCAGCTAGCCGAGACCTACAGGGCCGTGCCGGCGCCTCTATGGCACTCTCTGCTTAAGTCTCTTTGCGCTTCTTCCTCTTCGATTGGGCTAGGTTACGCGGTTGTTTTGTGGCTTCAGAAGCATAATCTGTGCTTCTCTTACGAATTGCTTTACTCGATTCTCATTCATGCTCTTGGCCGCTCTGAGAAGCTCTATGAAGCTTTCATTCTCTCCCAGAGCCAAACCCTAACCCCATTAACGTATAATGCTCTCATTGGTGCCTGTGCTCGCAATAACGATTCGGAGAAAGCTCTCAATCTGATATCAAGGATGCGACAGGATGGTTATCAATCTGATTTTGTCAATTATAGTTTGATAATTCAGTCGCTTACTCGCACCAATAAGATTGATGTTCCAATCTTGCAAAAGCTTTACGAAGAGATTGAGTCTGATAAAATTGAACTCGATGGGCAGCTCCTCAACGATATCATATTGGGCTTCGCGAAAGCTGGAGATCCTAACCGAGCTCTGTATTTCTTGTCCATGGTACAGGCGAGTGGTTTAAACCCCAAAACTTCTACGTTTGTTGCAATTATCTCTGCTTTGGGAAACTATGGGCGGACAGAGGAAGCTGAGGCTATCTTTGAGGAAATGAAGGAAGGTGGATTGAAACCAAGGATTAAGGCCTTCAATGCTCTTCTTAAAGGCTATGCTAAAAAGGGTTCTCTGAAAGAGGCAGAATCCATTGTTTCAGAGATGGAAAAGAGTGGATTATCACCGGATGAGCACACATATGGTCTTCTCGTTGATGCTTATGCAAATGTCGGGAGTTGGCAAAGTGCAAGACAATTGTTGAAACAAATGGAAGCTAGAAATGTACAGCCCAACACCTTCATTTTCAGTAGGATTTTAGCTAGTTATCGTGACCGGGGCGAATGGCAGAAAACGTTTGAAGTTTTGAGGGAAATGAAGAACTGCAATGTCAAACCTGATAGGCATTTTTACAATGTCATGATTGATACGTTTGGGAAGTTCAATTGCGTTGATCATGCCATGGAAACATATGAACGGATGCTCTCTGAGGGGATTGAACCCGATGTTGTTACTTGGAACACGCTTATAGATTGTCATCGTAAGCACGGATACCATGAAAGGGCTGCAGAGTTGTTCGAAGAAATGCAGGAACGTGGTTACTTTCCTTGTCCCACAACGTATAATATTATGATCAATTCATTAGGTGAGCAGGAAAAGTGGGACGAGGTGAAAATCTTGTTAGGAAAGATGCAGAGTCAGGGCTTACTTCCCAATGTGATAACATACACTACCCTTGTTGATATATATGGACAATCTGGAAGGTTTAATGACGCCATTGAGTGCTTGGAGGCCATGAAGTCTGCTGGACTGAAACCATCCTCAACAATGTATAATGCTTTAATCAATGCCTTTGCTCAAAAAGTTCCGGCTGTGTATGAAGAGATGATTTTGTCTGGATGTACACCTGATGGAAAGGCCAGAGCCATGTTGCGGTCTGCCCTCAAATACATGAAGCGTACACTAAGCTTATAGTTGGCCGCCTGATCATGTATCCATGCACTCTGTAGAACAAATTTGCAGGAGTTTATCAAACCAATACTCATAGGAATTGCCTATTCAAGCTTGAGTCATTTCTTATGACTTGGAGAAGAGAAAGGTTTGATCTTACACTAATAGTATGGCATTATACTATCAGCAAAAAGTTGACATTTCTAAAGTAGAACTGCCAATCACCCCTTAAATGATACAGCTCCACCGTACCGGCCGCCGGGTGCCGGTCTTTGAAACGCCAGGCAAATTCCCATCTATTGATAATTCTTGTATTATTGTTTATATAACATATTCACCATTCTTATGTCATACAGTAAAATGCAGAAGAAATAGTTGATCCAAGGACCTCAATATGTG

Coding sequence (CDS)

AATCATTCAGCCTTCATTTGGATTGCGTTCTGGAGCCGCCGCTGCCTTCACAACTTTCCCGATCACCCGATTCAATTTTCCGATAACATGCTTCTTCTGTCACCATTGCCTCTCTCTACTCGCTTTCCTGCAACTCAATTACCTTCTCCCACCGCCTTCCTCCACCACCAGAACCCCCCTATCACTACCCACCTCTCATTTCCCATCATCTCCGCCGCCGCCGCCACCACCACCTCCTTCTCCTCCGTCGTCACCTGTTCCACTTCATCGGACGCGCTCGAGCTCGACGTTTTCGAAAACGACCACGTTTCTTTTCAGAGTCGTCGCTACGACTTCACTCCTCTCCTCGACTTCCTTTCCCGGTCTCCGGCCTATCCGAAGTCCGATTCCGATTCGGAGGTGGAATTCGACTCTGTTTTGGACTCTGATTCTGAGTCTGATAAGGCTTCTCCGACCTCCCTTGACCCTACCGAGTTCCAGCTAGCCGAGACCTACAGGGCCGTGCCGGCGCCTCTATGGCACTCTCTGCTTAAGTCTCTTTGCGCTTCTTCCTCTTCGATTGGGCTAGGTTACGCGGTTGTTTTGTGGCTTCAGAAGCATAATCTGTGCTTCTCTTACGAATTGCTTTACTCGATTCTCATTCATGCTCTTGGCCGCTCTGAGAAGCTCTATGAAGCTTTCATTCTCTCCCAGAGCCAAACCCTAACCCCATTAACGTATAATGCTCTCATTGGTGCCTGTGCTCGCAATAACGATTCGGAGAAAGCTCTCAATCTGATATCAAGGATGCGACAGGATGGTTATCAATCTGATTTTGTCAATTATAGTTTGATAATTCAGTCGCTTACTCGCACCAATAAGATTGATGTTCCAATCTTGCAAAAGCTTTACGAAGAGATTGAGTCTGATAAAATTGAACTCGATGGGCAGCTCCTCAACGATATCATATTGGGCTTCGCGAAAGCTGGAGATCCTAACCGAGCTCTGTATTTCTTGTCCATGGTACAGGCGAGTGGTTTAAACCCCAAAACTTCTACGTTTGTTGCAATTATCTCTGCTTTGGGAAACTATGGGCGGACAGAGGAAGCTGAGGCTATCTTTGAGGAAATGAAGGAAGGTGGATTGAAACCAAGGATTAAGGCCTTCAATGCTCTTCTTAAAGGCTATGCTAAAAAGGGTTCTCTGAAAGAGGCAGAATCCATTGTTTCAGAGATGGAAAAGAGTGGATTATCACCGGATGAGCACACATATGGTCTTCTCGTTGATGCTTATGCAAATGTCGGGAGTTGGCAAAGTGCAAGACAATTGTTGAAACAAATGGAAGCTAGAAATGTACAGCCCAACACCTTCATTTTCAGTAGGATTTTAGCTAGTTATCGTGACCGGGGCGAATGGCAGAAAACGTTTGAAGTTTTGAGGGAAATGAAGAACTGCAATGTCAAACCTGATAGGCATTTTTACAATGTCATGATTGATACGTTTGGGAAGTTCAATTGCGTTGATCATGCCATGGAAACATATGAACGGATGCTCTCTGAGGGGATTGAACCCGATGTTGTTACTTGGAACACGCTTATAGATTGTCATCGTAAGCACGGATACCATGAAAGGGCTGCAGAGTTGTTCGAAGAAATGCAGGAACGTGGTTACTTTCCTTGTCCCACAACGTATAATATTATGATCAATTCATTAGGTGAGCAGGAAAAGTGGGACGAGGTGAAAATCTTGTTAGGAAAGATGCAGAGTCAGGGCTTACTTCCCAATGTGATAACATACACTACCCTTGTTGATATATATGGACAATCTGGAAGGTTTAATGACGCCATTGAGTGCTTGGAGGCCATGAAGTCTGCTGGACTGAAACCATCCTCAACAATGTATAATGCTTTAATCAATGCCTTTGCTCAAAAAGTTCCGGCTGTGTATGAAGAGATGATTTTGTCTGGATGTACACCTGATGGAAAGGCCAGAGCCATGTTGCGGTCTGCCCTCAAATACATGAAGCGTACACTAAGCTTATAG

Protein sequence

NHSAFIWIAFWSRRCLHNFPDHPIQFSDNMLLLSPLPLSTRFPATQLPSPTAFLHHQNPPITTHLSFPIISAAAATTTSFSSVVTCSTSSDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKASPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELLYSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQSDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAIISALGNYGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAKKGSLKEAESIVSEMEKSGLSPDEHTYGLLVDAYANVGSWQSARQLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNCNVKPDRHFYNVMIDTFGKFNCVDHAMETYERMLSEGIEPDVVTWNTLIDCHRKHGYHERAAELFEEMQERGYFPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVITYTTLVDIYGQSGRFNDAIECLEAMKSAGLKPSSTMYNALINAFAQKVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL

Homology

[Close]

BLAST of Carg21873 vs. NCBI nr
Match: XP_022999638.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita maxima])

HSP 1 Score: 619.4 bits (1596), Expect = 1.4e-173
Identity = 321/333 (96.40%), Postives = 321/333 (96.40%), Query Frame = 0


Query: 30  MLLLSPLPLSTRFPATQLPSPTAFLHHQNPPITTHLSFPIISAXXXXXXXXXXXVTCSTS 89
           MLLLSPLPLSTRFPATQLPSPT FLHHQNPPITTHLSFPIISA           VTCSTS
Sbjct: 1   MLLLSPLPLSTRFPATQLPSPTVFLHHQNPPITTHLSFPIISAAAATTASFSSVVTCSTS 60

Query: 90  SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA 149
           SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA
Sbjct: 61  SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA 120

Query: 150 SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL 209
           SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL
Sbjct: 121 SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL 180

Query: 210 YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ 269
           YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ
Sbjct: 181 YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ 240

Query: 270 SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL 329
           SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL
Sbjct: 241 SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL 300

Query: 330 YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
           YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE
Sbjct: 301 YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 333

HSP 2 Score: 75.9 bits (185), Expect = 6.0e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 674
           KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL
Sbjct: 683 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 719

[Close]

BLAST of Carg21873 vs. NCBI nr
Match: XP_023546092.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023546093.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 619.4 bits (1596), Expect = 1.4e-173
Identity = 321/333 (96.40%), Postives = 321/333 (96.40%), Query Frame = 0


Query: 30  MLLLSPLPLSTRFPATQLPSPTAFLHHQNPPITTHLSFPIISAXXXXXXXXXXXVTCSTS 89
           MLLLSPLPLSTRFPATQLPSPT FLHHQNPPITTHLSFPIISA           VTCSTS
Sbjct: 1   MLLLSPLPLSTRFPATQLPSPTVFLHHQNPPITTHLSFPIISAAAASTTSFSSVVTCSTS 60

Query: 90  SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA 149
           SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA
Sbjct: 61  SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA 120

Query: 150 SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL 209
           SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL
Sbjct: 121 SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL 180

Query: 210 YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ 269
           YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ
Sbjct: 181 YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ 240

Query: 270 SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL 329
           SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL
Sbjct: 241 SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL 300

Query: 330 YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
           YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE
Sbjct: 301 YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 333

HSP 2 Score: 75.9 bits (185), Expect = 6.0e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 674
           KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL
Sbjct: 683 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 719

[Close]

BLAST of Carg21873 vs. NCBI nr
Match: XP_022946456.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita moschata])

HSP 1 Score: 617.5 bits (1591), Expect = 5.5e-173
Identity = 331/333 (99.40%), Postives = 331/333 (99.40%), Query Frame = 0


Query: 30  MLLLSPLPLSTRFPATQLPSPTAFLHHQNPPITTHLSFPIISAXXXXXXXXXXXVTCSTS 89
           MLLLSPLPLSTRFPATQLPSPT FLHHQNPPITTHLSFPIIS XXXXXXXXXXXVTCSTS
Sbjct: 1   MLLLSPLPLSTRFPATQLPSPTVFLHHQNPPITTHLSFPIISXXXXXXXXXXXXVTCSTS 60

Query: 90  SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA 149
           SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA
Sbjct: 61  SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA 120

Query: 150 SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL 209
           SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL
Sbjct: 121 SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL 180

Query: 210 YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ 269
           YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ
Sbjct: 181 YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ 240

Query: 270 SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL 329
           SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL
Sbjct: 241 SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL 300

Query: 330 YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
           YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE
Sbjct: 301 YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 333

HSP 2 Score: 75.9 bits (185), Expect = 6.0e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 674
           KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL
Sbjct: 683 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 719

[Close]

BLAST of Carg21873 vs. NCBI nr
Match: XP_004144287.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Cucumis sativus] >KGN47545.1 hypothetical protein Csa_6G358090 [Cucumis sativus])

HSP 1 Score: 506.9 bits (1304), Expect = 1.0e-139
Identity = 273/337 (81.01%), Postives = 283/337 (83.98%), Query Frame = 0


Query: 30  MLLLSPLPLSTRFPATQLPSPTAFLHHQNPP--ITTHLSFPIISAXXXXXXXXXXXVTCS 89
           MLLLSPLPLSTRFPAT L SP  FLHH + P   TTHLSF   SA           VTC 
Sbjct: 1   MLLLSPLPLSTRFPATHLSSPPVFLHHHHNPHIATTHLSFSFFSA---PATSSSSLVTCY 60

Query: 90  TSSDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSD--SEVEFDSVLDSDSE 149
           TSSD LE DVFEND VS QSRRYDFTPLLDFLSRS AYPK DSD                
Sbjct: 61  TSSDNLEFDVFENDPVSLQSRRYDFTPLLDFLSRSSAYPKFDSDXXXXXXXXXXXXXXXX 120

Query: 150 SDKASPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFS 209
              ASPTSLDPTEFQLAE YRAVPAPLWHSLLKSLC+SSSSIGLGYAVV WLQ+HNLCFS
Sbjct: 121 XXTASPTSLDPTEFQLAEAYRAVPAPLWHSLLKSLCSSSSSIGLGYAVVSWLQRHNLCFS 180

Query: 210 YELLYSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQ 269
           YELLYSILIHALGRSEKLYEAFILSQ QTLTPLTYNALIGACARNND EKALNL+SRMRQ
Sbjct: 181 YELLYSILIHALGRSEKLYEAFILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQ 240

Query: 270 DGYQSDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDP 329
           DG+QSDF+NYSLIIQSLTRTNKID+P+LQKLYEEIESDKIELDG LLNDIILGFAKAGDP
Sbjct: 241 DGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGDP 300

Query: 330 NRALYFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
           NRALYFLSMVQASGLNPKTSTFVA+ISALGN+GRTEE
Sbjct: 301 NRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEE 334

HSP 2 Score: 74.7 bits (182), Expect = 1.3e-09
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 674
           KVPAVYEEMILSGCTPDGKARAMLRSAL+YMKRTLSL
Sbjct: 684 KVPAVYEEMILSGCTPDGKARAMLRSALRYMKRTLSL 720

[Close]

BLAST of Carg21873 vs. NCBI nr
Match: XP_008464858.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Cucumis melo])

HSP 1 Score: 496.9 bits (1278), Expect = 1.1e-136
Identity = 281/336 (83.63%), Postives = 288/336 (85.71%), Query Frame = 0


Query: 30  MLLLSPLPLSTRFPATQLPSPTAFLHHQNPPI-TTHLSFPIISAXXXXXXXXXXXVTCST 89
           MLLLSPLPLSTRFPAT L SP  FLHH NP I TTHLSF     XXXXXXXXXXX TC T
Sbjct: 1   MLLLSPLPLSTRFPATHLSSPAVFLHHHNPHITTTHLSFSF--XXXXXXXXXXXXXTCYT 60

Query: 90  SSDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKS--DSDSEVEFDSVLDSDSES 149
           SSD LE DVFE+D VS QSRRYDFTPLLDFLSRS AYPKS                    
Sbjct: 61  SSDNLEFDVFEDDPVSLQSRRYDFTPLLDFLSRSSAYPKSXXXXXXXXXXXXXXXXXXXX 120

Query: 150 DKASPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSY 209
               PTSLDPTEFQLAE YRAVPAPLWHSLLKSLC+SSSSIGLGYAVV WLQKHNLCFSY
Sbjct: 121 XXXXPTSLDPTEFQLAEAYRAVPAPLWHSLLKSLCSSSSSIGLGYAVVSWLQKHNLCFSY 180

Query: 210 ELLYSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQD 269
           ELLYSILIHALGRSEKLYEAFILSQ QTLTPLTYNALIGACARNND EKALNL+SRMRQD
Sbjct: 181 ELLYSILIHALGRSEKLYEAFILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQD 240

Query: 270 GYQSDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPN 329
           G+QSDFVNYSLIIQSLTRTNKID+PILQKLYEEIESDKIELDG LLNDIILGFAKAGDPN
Sbjct: 241 GFQSDFVNYSLIIQSLTRTNKIDIPILQKLYEEIESDKIELDGLLLNDIILGFAKAGDPN 300

Query: 330 RALYFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
           RALYFLSMVQASGLNPKTSTFVA+ISALGN+GRTEE
Sbjct: 301 RALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEE 334

HSP 2 Score: 74.7 bits (182), Expect = 1.3e-09
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 674
           KVPAVYEEMILSGCTPDGKARAMLRSAL+YMKRTLSL
Sbjct: 684 KVPAVYEEMILSGCTPDGKARAMLRSALRYMKRTLSL 720

[Close]

BLAST of Carg21873 vs. TAIR10
Match: AT5G42310.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 333.2 bits (853), Expect = 3.8e-91
Identity = 180/255 (70.59%), Postives = 207/255 (81.18%), Query Frame = 0


Query: 95  LDVFENDHVSFQS---RRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKASP 154
           LD  E +   F S   RRYDF+PLL FLSR            VE    LDS+SES+ ASP
Sbjct: 64  LDTNEEEDNEFSSEVHRRYDFSPLLKFLSRF---------GPVEL--ALDSESESE-ASP 123

Query: 155 TSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELLYS 214
            SL+P EF L E+YRAVPAP WHSL+KSL +S+SS+GL YAVV WLQKHNLCFSYELLYS
Sbjct: 124 ESLNPVEFDLVESYRAVPAPYWHSLIKSLTSSTSSLGLAYAVVSWLQKHNLCFSYELLYS 183

Query: 215 ILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQSD 274
           ILIHALGRSEKLYEAF+LSQ QTLTPLTYNALIGACARNND EKALNLI++MRQDGYQSD
Sbjct: 184 ILIHALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSD 243

Query: 275 FVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRALYF 334
           FVNYSL+IQSLTR+NKID  +L +LY+EIE DK+ELD QL+NDII+GFAK+GDP++AL  
Sbjct: 244 FVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQL 303

Query: 335 LSMVQASGLNPKTST 347
           L M QA+GL+ KT+T
Sbjct: 304 LGMAQATGLSAKTAT 306

[Close]

BLAST of Carg21873 vs. TAIR10
Match: AT1G14470.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 2.4e-05
Identity = 30/107 (28.04%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 179 SLCASSSSIGLGYAVVLWLQKHNLCFSYELLYSILIHALGRSEKLYEA-FILSQSQTLTP 238
           S C   + + LG  +V +++K+ +  + +  Y  LI    R   L+EA  +  + +    
Sbjct: 406 SACGHMADLELGDCIVDYIRKNQIKLN-DSGYRSLIFMYARGGNLWEAKRVFDEMKERDV 465

Query: 239 LTYNALIGACARNNDSEKALNLISRMRQDGYQSDFVNYSLIIQSLTR 285
           ++YN L  A A N D  + LNL+S+M+ +G + D V Y+ ++ +  R
Sbjct: 466 VSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNR 511

[Close]

BLAST of Carg21873 vs. TAIR10
Match: AT5G25630.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-05
Identity = 25/107 (23.36%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 255 KALNLISRMRQDGYQSDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLND 314
           +A  +   + + G++   ++Y+ ++ ++T   +     +  +  E+E    +LD    N 
Sbjct: 63  EAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYG--SISSIVSEVEQSGTKLDSIFFNA 122

Query: 315 IILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAIISALGNYGRTE 362
           +I  F+++G+   A+  L  ++  GLNP TST+  +I   G  G+ E
Sbjct: 123 VINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPE 167

[Close]

BLAST of Carg21873 vs. TAIR10
Match: AT1G16480.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 43.9 bits (102), Expect = 4.6e-04
Identity = 41/161 (25.47%), Postives = 77/161 (47.83%), Query Frame = 0


Query: 204 FSYELLYSILIHALGRSEKLYEA-FILSQSQTLTPLTYNALIGACARNNDSEKALNLISR 263
           F  +++ + L+   G+  ++ E+  +L Q      + +NALIG  A + D +KAL     
Sbjct: 394 FYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQT 453

Query: 264 MRQDGYQSDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKA 323
           MR +G  S+++    ++ +      + +   + L+  I S   E D  + N +I  +AK 
Sbjct: 454 MRVEGVSSNYITVVSVLSACLLPGDL-LERGKPLHAYIVSAGFESDEHVKNSLITMYAKC 513

Query: 324 GDPNRALYFLSMVQASGL-NPKTSTFVAIISALGNYGRTEE 363
           GD +      S    +GL N    T+ A+++A  ++G  EE
Sbjct: 514 GDLSS-----SQDLFNGLDNRNIITWNAMLAANAHHGHGEE 548

[Close]

BLAST of Carg21873 vs. TAIR10
Match: AT3G22150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 6.0e-04
Identity = 42/149 (28.19%), Postives = 71/149 (47.65%), Query Frame = 0


Query: 218 GRSEKLYEAFILSQSQTLTP--LTYNALIGACAR--NNDSEKALNLISRMRQDGYQSDFV 277
           G +EK +  F     Q + P  +T  +++ AC++  + D  K L+  S +RQ   Q+ FV
Sbjct: 500 GHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFS-IRQYLDQNVFV 559

Query: 278 NYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRALYFLS 337
             S ++   ++   I      K  E++ S   E +      +ILG+ + G   RA+    
Sbjct: 560 -ASALVDMYSKAGAI------KYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFL 619

Query: 338 MVQASGLNPKTSTFVAIISALGNYGRTEE 363
            +Q SG+ P   TFVA++SA    G  +E
Sbjct: 620 SMQESGIKPDAITFVAVLSACSYSGLIDE 640

[Close]

BLAST of Carg21873 vs. Swiss-Prot
Match: sp|Q8L844|PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRP1 PE=2 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.8e-90
Identity = 180/255 (70.59%), Postives = 207/255 (81.18%), Query Frame = 0


Query: 95  LDVFENDHVSFQS---RRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKASP 154
           LD  E +   F S   RRYDF+PLL FLSR            VE    LDS+SES+ ASP
Sbjct: 64  LDTNEEEDNEFSSEVHRRYDFSPLLKFLSRF---------GPVEL--ALDSESESE-ASP 123

Query: 155 TSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELLYS 214
            SL+P EF L E+YRAVPAP WHSL+KSL +S+SS+GL YAVV WLQKHNLCFSYELLYS
Sbjct: 124 ESLNPVEFDLVESYRAVPAPYWHSLIKSLTSSTSSLGLAYAVVSWLQKHNLCFSYELLYS 183

Query: 215 ILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQSD 274
           ILIHALGRSEKLYEAF+LSQ QTLTPLTYNALIGACARNND EKALNLI++MRQDGYQSD
Sbjct: 184 ILIHALGRSEKLYEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSD 243

Query: 275 FVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRALYF 334
           FVNYSL+IQSLTR+NKID  +L +LY+EIE DK+ELD QL+NDII+GFAK+GDP++AL  
Sbjct: 244 FVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQL 303

Query: 335 LSMVQASGLNPKTST 347
           L M QA+GL+ KT+T
Sbjct: 304 LGMAQATGLSAKTAT 306

[Close]

BLAST of Carg21873 vs. Swiss-Prot
Match: sp|Q84ZD2|CRP1_ORYSJ (Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0548300 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-12
Identity = 77/284 (27.11%), Postives = 111/284 (39.08%), Query Frame = 0


Query: 86  CSTSSDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSE 145
           CSTSS             S  + RYDF PLL +LS                     + S 
Sbjct: 25  CSTSS-------------SPSATRYDFDPLLSYLS---------------------TTSS 84

Query: 146 SDKASPTSLDP-TEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCF 205
           S    PTS+ P TE +LA +Y AVPA  WH+LL+ L A+ +S+ L +A++ +L +H LCF
Sbjct: 85  SPSPPPTSVLPVTESRLAASYAAVPAREWHALLRELAATDASLPLAFALLPFLHRHRLCF 144

Query: 206 SYELLYSILIHALGRSEKLYEAFIL-----SQSQTLTPLTYNALIGACARNNDSEKALNL 265
             +LL S L+H+L  S +L    +L     S S   +PL  N+L               L
Sbjct: 145 PLDLLLSSLLHSLSVSGRLLPHSLLLSFPPSLSDPPSPLLLNSLXXXXXXXXXXXXXXRL 204

Query: 266 ISRMRQDGYQSDF-VNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILG 325
           +  +R+  +  D                                                
Sbjct: 205 LGLLREHSFLPDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 264

Query: 326 FAKAGDPNRALYFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
                    AL  L+  QA GL P+++   A+IS+LG+  R  E
Sbjct: 265 XXXXXXXXAALELLASAQAIGLTPRSNAVTALISSLGSARRVAE 274

[Close]

BLAST of Carg21873 vs. Swiss-Prot
Match: sp|A0A1D6IEG9|CRP1_MAIZE (Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4577 GN=CRP1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-09
Identity = 54/162 (33.33%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 86  CSTSSDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSE 145
           C+TSS         +  VS  + RYDF PLL +LS SP+                 S   
Sbjct: 23  CTTSS-------VTSSSVSIPASRYDFEPLLAYLS-SPSV----------------SAXX 82

Query: 146 SDKASPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFS 205
                       E +LA +Y AVP+  WH+LL+ L AS +S+ L +A++ +L +H LCF 
Sbjct: 83  XXXXXXXXXXXXEHRLAASYSAVPSHEWHALLRDLAASDASLPLAFALLPFLHRHRLCFP 142

Query: 206 YELLYSILIHALGRSEKLYEAFIL-----SQSQTLTPLTYNA 243
            +LL S L+H+L  S +L    +L     S S   +PL  N+
Sbjct: 143 LDLLLSSLLHSLSVSGRLLPHSLLLSFPPSLSDPPSPLLLNS 160

[Close]

BLAST of Carg21873 vs. Swiss-Prot
Match: sp|Q9M9R6|PPR43_ARATH (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-04
Identity = 30/107 (28.04%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 179 SLCASSSSIGLGYAVVLWLQKHNLCFSYELLYSILIHALGRSEKLYEA-FILSQSQTLTP 238
           S C   + + LG  +V +++K+ +  + +  Y  LI    R   L+EA  +  + +    
Sbjct: 406 SACGHMADLELGDCIVDYIRKNQIKLN-DSGYRSLIFMYARGGNLWEAKRVFDEMKERDV 465

Query: 239 LTYNALIGACARNNDSEKALNLISRMRQDGYQSDFVNYSLIIQSLTR 285
           ++YN L  A A N D  + LNL+S+M+ +G + D V Y+ ++ +  R
Sbjct: 466 VSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNR 511

[Close]

BLAST of Carg21873 vs. Swiss-Prot
Match: sp|Q8GZ63|PP397_ARATH (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 9.7e-04
Identity = 25/107 (23.36%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 255 KALNLISRMRQDGYQSDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLND 314
           +A  +   + + G++   ++Y+ ++ ++T   +     +  +  E+E    +LD    N 
Sbjct: 63  EAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYG--SISSIVSEVEQSGTKLDSIFFNA 122

Query: 315 IILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAIISALGNYGRTE 362
           +I  F+++G+   A+  L  ++  GLNP TST+  +I   G  G+ E
Sbjct: 123 VINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPE 167

[Close]

BLAST of Carg21873 vs. TrEMBL
Match: tr|A0A0A0KCZ6|A0A0A0KCZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358090 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 6.9e-140
Identity = 273/337 (81.01%), Postives = 283/337 (83.98%), Query Frame = 0


Query: 30  MLLLSPLPLSTRFPATQLPSPTAFLHHQNPP--ITTHLSFPIISAXXXXXXXXXXXVTCS 89
           MLLLSPLPLSTRFPAT L SP  FLHH + P   TTHLSF   SA           VTC 
Sbjct: 1   MLLLSPLPLSTRFPATHLSSPPVFLHHHHNPHIATTHLSFSFFSA---PATSSSSLVTCY 60

Query: 90  TSSDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSD--SEVEFDSVLDSDSE 149
           TSSD LE DVFEND VS QSRRYDFTPLLDFLSRS AYPK DSD                
Sbjct: 61  TSSDNLEFDVFENDPVSLQSRRYDFTPLLDFLSRSSAYPKFDSDXXXXXXXXXXXXXXXX 120

Query: 150 SDKASPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFS 209
              ASPTSLDPTEFQLAE YRAVPAPLWHSLLKSLC+SSSSIGLGYAVV WLQ+HNLCFS
Sbjct: 121 XXTASPTSLDPTEFQLAEAYRAVPAPLWHSLLKSLCSSSSSIGLGYAVVSWLQRHNLCFS 180

Query: 210 YELLYSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQ 269
           YELLYSILIHALGRSEKLYEAFILSQ QTLTPLTYNALIGACARNND EKALNL+SRMRQ
Sbjct: 181 YELLYSILIHALGRSEKLYEAFILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQ 240

Query: 270 DGYQSDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDP 329
           DG+QSDF+NYSLIIQSLTRTNKID+P+LQKLYEEIESDKIELDG LLNDIILGFAKAGDP
Sbjct: 241 DGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGDP 300

Query: 330 NRALYFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
           NRALYFLSMVQASGLNPKTSTFVA+ISALGN+GRTEE
Sbjct: 301 NRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEE 334

HSP 2 Score: 74.7 bits (182), Expect = 8.8e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 674
           KVPAVYEEMILSGCTPDGKARAMLRSAL+YMKRTLSL
Sbjct: 684 KVPAVYEEMILSGCTPDGKARAMLRSALRYMKRTLSL 720

[Close]

BLAST of Carg21873 vs. TrEMBL
Match: tr|A0A1S3CMJ2|A0A1S3CMJ2_CUCME (pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103502629 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 7.2e-137
Identity = 281/336 (83.63%), Postives = 288/336 (85.71%), Query Frame = 0


Query: 30  MLLLSPLPLSTRFPATQLPSPTAFLHHQNPPI-TTHLSFPIISAXXXXXXXXXXXVTCST 89
           MLLLSPLPLSTRFPAT L SP  FLHH NP I TTHLSF     XXXXXXXXXXX TC T
Sbjct: 1   MLLLSPLPLSTRFPATHLSSPAVFLHHHNPHITTTHLSFSF--XXXXXXXXXXXXXTCYT 60

Query: 90  SSDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKS--DSDSEVEFDSVLDSDSES 149
           SSD LE DVFE+D VS QSRRYDFTPLLDFLSRS AYPKS                    
Sbjct: 61  SSDNLEFDVFEDDPVSLQSRRYDFTPLLDFLSRSSAYPKSXXXXXXXXXXXXXXXXXXXX 120

Query: 150 DKASPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSY 209
               PTSLDPTEFQLAE YRAVPAPLWHSLLKSLC+SSSSIGLGYAVV WLQKHNLCFSY
Sbjct: 121 XXXXPTSLDPTEFQLAEAYRAVPAPLWHSLLKSLCSSSSSIGLGYAVVSWLQKHNLCFSY 180

Query: 210 ELLYSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQD 269
           ELLYSILIHALGRSEKLYEAFILSQ QTLTPLTYNALIGACARNND EKALNL+SRMRQD
Sbjct: 181 ELLYSILIHALGRSEKLYEAFILSQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQD 240

Query: 270 GYQSDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPN 329
           G+QSDFVNYSLIIQSLTRTNKID+PILQKLYEEIESDKIELDG LLNDIILGFAKAGDPN
Sbjct: 241 GFQSDFVNYSLIIQSLTRTNKIDIPILQKLYEEIESDKIELDGLLLNDIILGFAKAGDPN 300

Query: 330 RALYFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
           RALYFLSMVQASGLNPKTSTFVA+ISALGN+GRTEE
Sbjct: 301 RALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEE 334

HSP 2 Score: 74.7 bits (182), Expect = 8.8e-10
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 674
           KVPAVYEEMILSGCTPDGKARAMLRSAL+YMKRTLSL
Sbjct: 684 KVPAVYEEMILSGCTPDGKARAMLRSALRYMKRTLSL 720

[Close]

BLAST of Carg21873 vs. TrEMBL
Match: tr|A0A2N9G4F2|A0A2N9G4F2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22207 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.0e-98
Identity = 218/333 (65.47%), Postives = 239/333 (71.77%), Query Frame = 0


Query: 30  MLLLSPLPLSTRFPATQLPSPTAFLHHQNPPITTHLSFPIISAXXXXXXXXXXXVTCSTS 89
           M LL P P  TRF +  L  P  + HH       +L  P +S      XXXXXX      
Sbjct: 1   MFLLPPPPFPTRFSSLHLSFPIHYRHH-------YLLQPPLSVTTISTXXXXXXXXXXXX 60

Query: 90  SDALELDVFENDHVSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA 149
                            SRRYDF PLL+FLS++              DSV  +  +SD  
Sbjct: 61  XXXXXXXXXXXXXXXVPSRRYDFIPLLNFLSKT-------------LDSVTVTVPDSD-- 120

Query: 150 SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL 209
            PTSLDP EFQLAETYRAVPAPLWHSLLKSLC+SSSSIGL YAVV WLQKHNLCFSYELL
Sbjct: 121 PPTSLDPAEFQLAETYRAVPAPLWHSLLKSLCSSSSSIGLAYAVVSWLQKHNLCFSYELL 180

Query: 210 YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ 269
           YSILIHALGRSEKLYEAF+LSQ QTLTPLTYNALIGACARNND EKAL+LISRMRQDG+ 
Sbjct: 181 YSILIHALGRSEKLYEAFLLSQRQTLTPLTYNALIGACARNNDLEKALSLISRMRQDGFP 240

Query: 270 SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL 329
           SDFVNYSLIIQSLTRTN+ID PIL KLY EIE DKIELD QLLNDI +GFAKAGD   A+
Sbjct: 241 SDFVNYSLIIQSLTRTNRIDSPILHKLYREIECDKIELDCQLLNDITVGFAKAGDLTWAM 300

Query: 330 YFLSMVQASGLNPKTSTFVAIISALGNYGRTEE 363
           +FL+MVQ SGL+ KT+T VA+ISALGN GRT E
Sbjct: 301 HFLAMVQGSGLSAKTATLVAVISALGNTGRTVE 311

HSP 2 Score: 65.1 bits (157), Expect = 7.0e-07
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 637  KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTL 672
            KVPAVYEEMI SGCTPDGKA+ MLRSAL+YMK+TL
Sbjct: 1019 KVPAVYEEMISSGCTPDGKAKGMLRSALRYMKQTL 1053

[Close]

BLAST of Carg21873 vs. TrEMBL
Match: tr|A0A1Q3B6I0|A0A1Q3B6I0_CEPFO (PPR domain-containing protein/PPR_1 domain-containing protein/PPR_2 domain-containing protein/PPR_3 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06982 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.9e-97
Identity = 192/260 (73.85%), Postives = 212/260 (81.54%), Query Frame = 0


Query: 103 VSFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKASPTSLDPTEFQLA 162
           +S Q+RRYDF PLLDFLS                    D DS+ + ASPTSL+  EFQLA
Sbjct: 67  LSLQARRYDFAPLLDFLSN-------------------DFDSDVNSASPTSLNSVEFQLA 126

Query: 163 ETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELLYSILIHALGRSEK 222
           E+YRAVPAPLWHSLLKSLC+SS+S  L YAVV WLQKHNLCFSYELLYSILIHALGRSEK
Sbjct: 127 ESYRAVPAPLWHSLLKSLCSSSNSFNLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEK 186

Query: 223 LYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQSDFVNYSLIIQSL 282
           LYEAF+LS SQTLTPLTYNALIGACARNND EKALNL+SRMRQDGY SDFVNYSL+IQSL
Sbjct: 187 LYEAFLLSHSQTLTPLTYNALIGACARNNDLEKALNLMSRMRQDGYASDFVNYSLVIQSL 246

Query: 283 TRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRALYFLSMVQASGLNP 342
           TR NKID  +LQKLY EIE DKIELD QLLNDII+GFAK+GDPNRA+ FLSMVQ  GL  
Sbjct: 247 TRNNKIDSSLLQKLYREIECDKIELDVQLLNDIIVGFAKSGDPNRAMQFLSMVQGCGLTV 306

Query: 343 KTSTFVAIISALGNYGRTEE 363
           KT+T +AI+S+LG+YGR  E
Sbjct: 307 KTATLLAILSSLGSYGRIAE 307

HSP 2 Score: 63.2 bits (152), Expect = 2.6e-06
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTL 672
           +VP VYEEMI+SGCTPD KARAMLRSAL+YMK+TL
Sbjct: 657 EVPGVYEEMIISGCTPDRKARAMLRSALRYMKQTL 691

[Close]

BLAST of Carg21873 vs. TrEMBL
Match: tr|A0A2C9VVZ3|A0A2C9VVZ3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G134500 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 2.5e-97
Identity = 212/323 (65.63%), Postives = 233/323 (72.14%), Query Frame = 0


Query: 31  LLLSPLPLSTRFPATQLPSPTAFLHHQNPPITTHLSFPIISAXXXXXXXXXXXVTCSTSS 90
           +LL P    TRFP+ Q+PSP                      XXXXXX         +SS
Sbjct: 4   MLLFPXXXXTRFPSIQIPSPFPLXXXXXXXXXXXXXXXXXXXXXXXXXPTNLAGPTVSSS 63

Query: 91  DALELDVFENDHV-SFQSRRYDFTPLLDFLSRSPAYPKSDSDSEVEFDSVLDSDSESDKA 150
             L  D  + D +   QSRRYDFTPLLDFLS   +   +  DSE               A
Sbjct: 64  RRLNNDQNDMDDILPLQSRRYDFTPLLDFLSNQISSSATSDDSE--------------SA 123

Query: 151 SPTSLDPTEFQLAETYRAVPAPLWHSLLKSLCASSSSIGLGYAVVLWLQKHNLCFSYELL 210
           SPTSLD TEFQLAE+YRAVP PLWHSLLKSLC SSSSIGLGYAVV WLQKHNLCFSYELL
Sbjct: 124 SPTSLDATEFQLAESYRAVPGPLWHSLLKSLCTSSSSIGLGYAVVSWLQKHNLCFSYELL 183

Query: 211 YSILIHALGRSEKLYEAFILSQSQTLTPLTYNALIGACARNNDSEKALNLISRMRQDGYQ 270
           YSILIHALGRSEKLYEAF+LSQ QTL+PLTYNALI ACARNND EKALNLISRMR DGY 
Sbjct: 184 YSILIHALGRSEKLYEAFLLSQRQTLSPLTYNALINACARNNDLEKALNLISRMRLDGYP 243

Query: 271 SDFVNYSLIIQSLTRTNKIDVPILQKLYEEIESDKIELDGQLLNDIILGFAKAGDPNRAL 330
           SDFVNYSLIIQSLTR+N+ID  ILQKLY EIE DK+ELD QL NDII+GFAKAGDP+RA+
Sbjct: 244 SDFVNYSLIIQSLTRSNRIDSVILQKLYNEIECDKLELDVQLSNDIIIGFAKAGDPSRAM 303

Query: 331 YFLSMVQASGLNPKTSTFVAIIS 353
            FL MVQ +GL+P+TST VA+IS
Sbjct: 304 EFLGMVQGNGLSPRTSTLVAVIS 312

HSP 2 Score: 67.4 bits (163), Expect = 1.4e-07
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 637 KVPAVYEEMILSGCTPDGKARAMLRSALKYMKRTLSL 674
           KVP+VYEEMIL+GCTPD KARAMLRSALKYMK+TL L
Sbjct: 672 KVPSVYEEMILAGCTPDRKARAMLRSALKYMKQTLKL 708

The following BLAST results are available for this feature:

BLAST of Carg21873 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999638.1	1.4e-173	96.40	pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita ...	[more]
XP_023546092.1	1.4e-173	96.40	pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita ...	[more]
XP_022946456.1	5.5e-173	99.40	pentatricopeptide repeat-containing protein At5g42310, chloroplastic [Cucurbita ...	[more]
XP_004144287.1	1.0e-139	81.01	PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial ...	[more]
XP_008464858.1	1.1e-136	83.63	PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial ...	[more]

BLAST of Carg21873 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42310.1	3.8e-91	70.59	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G14470.1	2.4e-05	28.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G25630.2	5.4e-05	23.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G16480.1	4.6e-04	25.47	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G22150.1	6.0e-04	28.19	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg21873 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L844\|PP413_ARATH	6.8e-90	70.59	Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidop...	[more]
sp\|Q84ZD2\|CRP1_ORYSJ	2.0e-12	27.11	Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza...	[more]
sp\|A0A1D6IEG9\|CRP1_MAIZE	1.5e-09	33.33	Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4...	[more]
sp\|Q9M9R6\|PPR43_ARATH	4.4e-04	28.04	Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX...	[more]
sp\|Q8GZ63\|PP397_ARATH	9.7e-04	23.36	Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX...	[more]

BLAST of Carg21873 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCZ6\|A0A0A0KCZ6_CUCSA	6.9e-140	81.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G358090 PE=4 SV=1	[more]
tr\|A0A1S3CMJ2\|A0A1S3CMJ2_CUCME	7.2e-137	83.63	pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Cucumis ...	[more]
tr\|A0A2N9G4F2\|A0A2N9G4F2_FAGSY	1.0e-98	65.47	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22207 PE=4 SV=1	[more]
tr\|A0A1Q3B6I0\|A0A1Q3B6I0_CEPFO	1.9e-97	73.85	PPR domain-containing protein/PPR_1 domain-containing protein/PPR_2 domain-conta...	[more]
tr\|A0A2C9VVZ3\|A0A2C9VVZ3_MANES	2.5e-97	65.63	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G134500 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21873-RA	Carg21873-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 566..672 e-value: 1.0E-18 score: 70.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 293..441 e-value: 4.7E-38 score: 133.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 157..292 e-value: 5.0E-13 score: 50.7 coord: 453..564 e-value: 2.5E-33 score: 117.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	SSF48452	TPR-like	coord: 482..613 coord: 323..447
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 452..483 e-value: 0.0019 score: 16.2 coord: 590..623 e-value: 7.9E-8 score: 30.0 coord: 381..414 e-value: 3.3E-8 score: 31.2 coord: 415..449 e-value: 5.8E-6 score: 24.2 coord: 520..552 e-value: 1.0E-8 score: 32.8 coord: 346..377 e-value: 6.1E-7 score: 27.2 coord: 239..269 e-value: 1.7E-6 score: 25.8 coord: 487..519 e-value: 1.2E-7 score: 29.4 coord: 556..589 e-value: 3.5E-6 score: 24.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 346..374 e-value: 2.4E-5 score: 24.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 239..283 e-value: 1.1E-7 score: 31.8 coord: 517..564 e-value: 4.6E-15 score: 55.4 coord: 379..426 e-value: 1.1E-11 score: 44.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 436..496 e-value: 3.0E-8 score: 33.5 coord: 576..635 e-value: 1.1E-11 score: 44.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 518..552 score: 13.351
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 343..377 score: 11.827
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 413..447 score: 11.762
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 553..587 score: 10.534
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 378..412 score: 12.145
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 308..342 score: 8.418
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 271..307 score: 6.511
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 588..622 score: 12.441
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 448..482 score: 9.745
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 483..517 score: 11.356
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 236..270 score: 11.17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..155
None	No IPR available	PANTHER	PTHR24015:SF788	SUBFAMILY NOT NAMED	coord: 77..637
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 77..637

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21873	Cla021941	Watermelon (97103) v1	carwmB0199
Carg21873	Csa6G358090	Cucumber (Chinese Long) v2	carcuB0236
Carg21873	MELO3C026541	Melon (DHL92) v3.5.1	carmeB0216
Carg21873	ClCG08G009460	Watermelon (Charleston Gray)	carwcgB0205
Carg21873	CSPI06G18720	Wild cucumber (PI 183967)	carcpiB0242
Carg21873	Cucsa.077600	Cucumber (Gy14) v1	carcgyB0255
Carg21873	CmaCh05G009860	Cucurbita maxima (Rimu)	carcmaB0290
Carg21873	CmoCh05G010040	Cucurbita moschata (Rifu)	carcmoB0296
Carg21873	Lsi08G007960	Bottle gourd (USVL1VR-Ls)	carlsiB188
Carg21873	Cp4.1LG11g07920	Cucurbita pepo (Zucchini)	carcpeB0297
Carg21873	CsGy6G018170	Cucumber (Gy14) v2	carcgybB0225
Carg21873	MELO3C026541.2	Melon (DHL92) v3.6.1	carmedB0221
Carg21873	CsaV3_6G031600	Cucumber (Chinese Long) v3	carcucB0240
Carg21873	Cla97C08G152280	Watermelon (97103) v2	carwmbB0214
Carg21873	Bhi04G001238	Wax gourd	carwgoB0261

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21873	Silver-seed gourd	carcarB159
Carg21873	Silver-seed gourd	carcarB247
Carg21873	Silver-seed gourd	carcarB248
Carg21873	Cucurbita maxima (Rimu)	carcmaB0289
Carg21873	Cucurbita moschata (Rifu)	carcmoB0294
Carg21873	Cucurbita moschata (Rifu)	carcmoB0295
Carg21873	Cucurbita pepo (Zucchini)	carcpeB0298
Carg21873	Cucurbita pepo (Zucchini)	carcpeB0299