Carg21708 (gene) Silver-seed gourd

Overview
NameCarg21708
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_132 : 284871 .. 285684 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCAATCGGGGCTCAGATTCGGACCCAAATCATCCATATCCATCCCAGACCTGAGGTTCGGTCCGAACCTCAACTCTGTGCCCCAGTTCGTTGAAATTTTCGCACTCTTTCGATCGCTTTATCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTGAGCTCGGGGAGGCACATATAGTCGTATCTCTCTCTGATTCAAACCCTAACACTGCATAATCCAGCATTATCAGAGGAACGCTTACAAGTTCATGTGAAAGCTCATCAAATCAGTGTGAGTTTGTTGCTTGCTTCTTTCTTTTTTAAAACCCTAATTTTTTCCCCTTTTCCGGGGGTATTTTCTTTTGGGAAATAGTGAATAAGTGCTTCATGGCGGTGTCTTGGGTACGGGCAACTTGTTGCAGCTTGTTGCAGCTTATAGTGTTGTGTTGCGCCTTCTCCTTGGGTTAATCTGGAGAAAATTTGTGGCTTCTGTACCTACCTGTTTGGTTGTCTGGAAAATGGTGGTGGAGGAAGGGATTGATTATATTTGTGGCGTGTTTTACTTCCTTTTGTCGATAATGAAGTTTTTGGACGACATTAGTGTTGTTGCTTGTGTCAGCGCAACATGTCGTCTCTTGATCCCCTTCCCCATTTTTGTCATTTTTGCTTTTCATGTGTTGCGCAAGCTTTTTGGGTTCTGGGAGCGAAAATTTTTACAACGTAATGTCGTAATCTTTTCATTGTGGTTTGTAAGCACTGCAAACCACTCTTTATCTTCACGTTCTTTCACTGGTTATCTTACAGAGATAGGACCGGCTTTATATTGA

mRNA sequence

ATGGCGATGGCAATCGGGGCTCAGATTCGGACCCAAATCATCCATATCCATCCCAGACCTGAGGTTCGGTCCGAACCTCAACTCTGTGCCCCACTTGTTGCAGCTTATAGTGTTGTGTTGCGCCTTCTCCTTGGGTTAATCTGGAGAAAATTTGTGGCTTCTGTACCTACCTGTTTGGTTGTCTGGAAAATGGTGGTGGAGGAAGGGATTGATTATATTTGTGGCGTGTTTTACTTCCTTTTGTCGATAATGAAGTTTTTGGACGACATTAGTGTTGTTGCTTGTGTCAGCGCAACATGTCGTCTCTTGATCCCCTTCCCCATTTTTGTCATTTTTGCTTTTCATGTGTTGCGCAAGCTTTTTGGGTTCTGGGAGCGAAAATTTTTACAACGTAATGTCGTAATCTTTTCATTGTGGTTTGTAAGCACTGCAAACCACTCTTTATCTTCACGTTCTTTCACTGGTTATCTTACAGAGATAGGACCGGCTTTATATTGA

Coding sequence (CDS)

ATGGCGATGGCAATCGGGGCTCAGATTCGGACCCAAATCATCCATATCCATCCCAGACCTGAGGTTCGGTCCGAACCTCAACTCTGTGCCCCACTTGTTGCAGCTTATAGTGTTGTGTTGCGCCTTCTCCTTGGGTTAATCTGGAGAAAATTTGTGGCTTCTGTACCTACCTGTTTGGTTGTCTGGAAAATGGTGGTGGAGGAAGGGATTGATTATATTTGTGGCGTGTTTTACTTCCTTTTGTCGATAATGAAGTTTTTGGACGACATTAGTGTTGTTGCTTGTGTCAGCGCAACATGTCGTCTCTTGATCCCCTTCCCCATTTTTGTCATTTTTGCTTTTCATGTGTTGCGCAAGCTTTTTGGGTTCTGGGAGCGAAAATTTTTACAACGTAATGTCGTAATCTTTTCATTGTGGTTTGTAAGCACTGCAAACCACTCTTTATCTTCACGTTCTTTCACTGGTTATCTTACAGAGATAGGACCGGCTTTATATTGA

Protein sequence

MAMAIGAQIRTQIIHIHPRPEVRSEPQLCAPLVAAYSVVLRLLLGLIWRKFVASVPTCLVVWKMVVEEGIDYICGVFYFLLSIMKFLDDISVVACVSATCRLLIPFPIFVIFAFHVLRKLFGFWERKFLQRNVVIFSLWFVSTANHSLSSRSFTGYLTEIGPALY
Homology
[Close]
BLAST of Carg21708 vs. NCBI nr
Match: KGN64041.1 (hypothetical protein Csa_1G039080 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 3.5e-04
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1  MAMAIGAQIRTQIIHIHPRPEVRSEPQLCAP 32
          MAM IGA IRTQI HIHP P++RS+PQ CAP
Sbjct: 3  MAMVIGAHIRTQITHIHPEPQLRSDPQFCAP 33

[Close]
BLAST of Carg21708 vs. TrEMBL
Match: tr|A0A0A0LVL3|A0A0A0LVL3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039080 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 1  MAMAIGAQIRTQIIHIHPRPEVRSEPQLCAP 32
          MAM IGA IRTQI HIHP P++RS+PQ CAP
Sbjct: 3  MAMVIGAHIRTQITHIHPEPQLRSDPQFCAP 33

The following BLAST results are available for this feature:
BLAST of Carg21708 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64041.13.5e-0474.19hypothetical protein Csa_1G039080 [Cucumis sativus][more]
BLAST of Carg21708 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg21708 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg21708 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVL3|A0A0A0LVL3_CUCSA2.3e-0474.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21708-RACarg21708-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg21708Csa1G039080Cucumber (Chinese Long) v2carcuB0052
Carg21708CSPI01G06020Wild cucumber (PI 183967)carcpiB0056
Carg21708CsGy1G005730Cucumber (Gy14) v2carcgybB0052
Carg21708CsaV3_1G005890Cucumber (Chinese Long) v3carcucB0058
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg21708Silver-seed gourdcarcarB058
Carg21708Cucumber (Gy14) v2carcgybB0053
Carg21708Cucumber (Gy14) v2carcgybB0055
Carg21708Cucumber (Gy14) v1carcgyB0060
Carg21708Cucumber (Gy14) v1carcgyB0061
Carg21708Cucurbita maxima (Rimu)carcmaB0065
Carg21708Cucurbita maxima (Rimu)carcmaB0067
Carg21708Cucurbita moschata (Rifu)carcmoB0068
Carg21708Cucurbita moschata (Rifu)carcmoB0070
Carg21708Cucurbita pepo (Zucchini)carcpeB0070
Carg21708Cucurbita pepo (Zucchini)carcpeB0071
Carg21708Cucurbita pepo (Zucchini)carcpeB0073
Carg21708Wild cucumber (PI 183967)carcpiB0057
Carg21708Cucumber (Chinese Long) v2carcuB0053
Carg21708Cucumber (Chinese Long) v3carcucB0059
Carg21708Bottle gourd (USVL1VR-Ls)carlsiB047
Carg21708Bottle gourd (USVL1VR-Ls)carlsiB049
Carg21708Melon (DHL92) v3.5.1carmeB0053
Carg21708Melon (DHL92) v3.5.1carmeB0054
Carg21708Melon (DHL92) v3.6.1carmedB0054
Carg21708Melon (DHL92) v3.6.1carmedB0055
Carg21708Watermelon (Charleston Gray)carwcgB0054
Carg21708Watermelon (Charleston Gray)carwcgB0056
Carg21708Watermelon (97103) v1carwmB0055
Carg21708Watermelon (97103) v1carwmB0056
Carg21708Watermelon (97103) v2carwmbB0053
Carg21708Watermelon (97103) v2carwmbB0051
Carg21708Wax gourdcarwgoB0059
Carg21708Wax gourdcarwgoB0061