CSPI01G06020 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G06020
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 3786072 .. 3786527 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCGATGGTAATCGGGGCTCACATTCGGACCCAAATCACCCATATTCATCCCGAACCACAGCTTCGGTCCGATCCTCAGTTCTGTGCCCCAGTTCGTTGAAATTTTCGCACTCTTTCGATCACTTTATCTCTCTCTCTCTCTCTGAGCTCGGGGAGGCTCATATAGTCGTATCTCTCTCTCTCTCTCTCGCCCTCTCTCTGATTCAAACCCTAACACTTCACAATCCAGCATTATCAGAGGATCGCCTTCAAGTTCCATACGCAAGCTCATCAAATCAGTGTGAGTTCGTTGCCTCCTTCTTTTATCTTCAAAAACCCTAATTTTCCCCCCTTTCTGCGGGTCGTTTCTTTTAGGAAATACTTAATAGATGATTTACTGGTGGCGTCTTCTGGTCGGGCAGCTTGTTACACCTTGTTACTGTTGTTTTGCACCTTCTCCTTGAGTTAA

mRNA sequence

ATGGCGATGGCGATGGTAATCGGGGCTCACATTCGGACCCAAATCACCCATATTCATCCCGAACCACAGCTTCGGTCCGATCCTCAGTTCTGTGCCCCACATTATCAGAGGATCGCCTTCAAGTTCCATACGCAAGCTCATCAAATCAGTGTGAGTTCGTTGCCTCCTTCTTTTATCTTCAAAAACCCTAATTTTCCCCCCTTTCTGCGGGTCGTTTCTTTTAGGAAATACTTAATAGATGATTTACTGGTGGCGTCTTCTGGTCGGGCAGCTTGTTACACCTTGTTACTGTTGTTTTGCACCTTCTCCTTGAGTTAA

Coding sequence (CDS)

ATGGCGATGGCGATGGTAATCGGGGCTCACATTCGGACCCAAATCACCCATATTCATCCCGAACCACAGCTTCGGTCCGATCCTCAGTTCTGTGCCCCACATTATCAGAGGATCGCCTTCAAGTTCCATACGCAAGCTCATCAAATCAGTGTGAGTTCGTTGCCTCCTTCTTTTATCTTCAAAAACCCTAATTTTCCCCCCTTTCTGCGGGTCGTTTCTTTTAGGAAATACTTAATAGATGATTTACTGGTGGCGTCTTCTGGTCGGGCAGCTTGTTACACCTTGTTACTGTTGTTTTGCACCTTCTCCTTGAGTTAA
Homology
[Close]
BLAST of CSPI01G06020 vs. TrEMBL
Match: A0A0A0LVL3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039080 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MAMAMVIGAHIRTQITHIHPEPQLRSDPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF 60
           MAMAMVIGAHIRTQITHIHPEPQLRSDPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF
Sbjct: 1   MAMAMVIGAHIRTQITHIHPEPQLRSDPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF 60

Query: 61  KNPNFPPFLRVVSFRKYLIDDLLVASSGRAACYTLLLLFCTFSLS 106
           KNPNFPPFLRVVSFRKYLIDDLLVASSGRAACYTLLLLFCTFSLS
Sbjct: 61  KNPNFPPFLRVVSFRKYLIDDLLVASSGRAACYTLLLLFCTFSLS 105

[Close]
BLAST of CSPI01G06020 vs. NCBI nr
Match: gi|700208945|gb|KGN64041.1| (hypothetical protein Csa_1G039080 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 6.7e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

Query: 1   MAMAMVIGAHIRTQITHIHPEPQLRSDPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF 60
           MAMAMVIGAHIRTQITHIHPEPQLRSDPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF
Sbjct: 1   MAMAMVIGAHIRTQITHIHPEPQLRSDPQFCAPHYQRIAFKFHTQAHQISVSSLPPSFIF 60

Query: 61  KNPNFPPFLRVVSFRKYLIDDLLVASSGRAACYTLLLLFCTFSLS 106
           KNPNFPPFLRVVSFRKYLIDDLLVASSGRAACYTLLLLFCTFSLS
Sbjct: 61  KNPNFPPFLRVVSFRKYLIDDLLVASSGRAACYTLLLLFCTFSLS 105

The following BLAST results are available for this feature:
BLAST of CSPI01G06020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G06020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVL3_CUCSA4.6e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G039080 PE=4 SV=1[more]
BLAST of CSPI01G06020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G06020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700208945|gb|KGN64041.1|6.7e-53100.00hypothetical protein Csa_1G039080 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G06020.1CSPI01G06020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G06020Csa1G039080Cucumber (Chinese Long) v2cpicuB000
CSPI01G06020CsaV3_1G005890Cucumber (Chinese Long) v3cpicucB001
CSPI01G06020Cla97C04G078800Watermelon (97103) v2cpiwmbB055
CSPI01G06020CsGy1G005730Cucumber (Gy14) v2cgybcpiB001
CSPI01G06020Carg21708Silver-seed gourdcarcpiB0056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G06020Cucumber (Gy14) v1cgycpiB137
CSPI01G06020Cucumber (Gy14) v1cgycpiB233
CSPI01G06020Cucumber (Gy14) v1cgycpiB311
CSPI01G06020Cucumber (Gy14) v1cgycpiB426
CSPI01G06020Cucurbita maxima (Rimu)cmacpiB087
CSPI01G06020Cucurbita maxima (Rimu)cmacpiB218
CSPI01G06020Cucurbita maxima (Rimu)cmacpiB280
CSPI01G06020Cucurbita maxima (Rimu)cmacpiB407
CSPI01G06020Cucurbita maxima (Rimu)cmacpiB431
CSPI01G06020Cucurbita maxima (Rimu)cmacpiB692
CSPI01G06020Cucurbita maxima (Rimu)cmacpiB694
CSPI01G06020Cucurbita moschata (Rifu)cmocpiB080
CSPI01G06020Cucurbita moschata (Rifu)cmocpiB204
CSPI01G06020Cucurbita moschata (Rifu)cmocpiB391
CSPI01G06020Cucurbita moschata (Rifu)cmocpiB421
CSPI01G06020Cucurbita moschata (Rifu)cmocpiB685
CSPI01G06020Cucurbita moschata (Rifu)cmocpiB686
CSPI01G06020Cucumber (Chinese Long) v2cpicuB003
CSPI01G06020Cucumber (Chinese Long) v2cpicuB036
CSPI01G06020Cucumber (Chinese Long) v2cpicuB039
CSPI01G06020Cucumber (Chinese Long) v2cpicuB045
CSPI01G06020Melon (DHL92) v3.5.1cpimeB001
CSPI01G06020Melon (DHL92) v3.5.1cpimeB004
CSPI01G06020Melon (DHL92) v3.5.1cpimeB024
CSPI01G06020Melon (DHL92) v3.5.1cpimeB058
CSPI01G06020Melon (DHL92) v3.5.1cpimeB063
CSPI01G06020Watermelon (Charleston Gray)cpiwcgB059
CSPI01G06020Watermelon (Charleston Gray)cpiwcgB065
CSPI01G06020Watermelon (Charleston Gray)cpiwcgB085
CSPI01G06020Watermelon (Charleston Gray)cpiwcgB092
CSPI01G06020Watermelon (97103) v1cpiwmB009
CSPI01G06020Watermelon (97103) v1cpiwmB038
CSPI01G06020Watermelon (97103) v1cpiwmB066
CSPI01G06020Watermelon (97103) v1cpiwmB101
CSPI01G06020Cucurbita pepo (Zucchini)cpecpiB018
CSPI01G06020Cucurbita pepo (Zucchini)cpecpiB379
CSPI01G06020Cucurbita pepo (Zucchini)cpecpiB380
CSPI01G06020Cucurbita pepo (Zucchini)cpecpiB505
CSPI01G06020Cucurbita pepo (Zucchini)cpecpiB535
CSPI01G06020Cucurbita pepo (Zucchini)cpecpiB658
CSPI01G06020Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G06020Bottle gourd (USVL1VR-Ls)cpilsiB053
CSPI01G06020Bottle gourd (USVL1VR-Ls)cpilsiB072
CSPI01G06020Melon (DHL92) v3.6.1cpimedB001
CSPI01G06020Melon (DHL92) v3.6.1cpimedB004
CSPI01G06020Melon (DHL92) v3.6.1cpimedB023
CSPI01G06020Melon (DHL92) v3.6.1cpimedB052
CSPI01G06020Cucumber (Gy14) v2cgybcpiB003
CSPI01G06020Cucumber (Gy14) v2cgybcpiB200
CSPI01G06020Cucumber (Gy14) v2cgybcpiB203
CSPI01G06020Silver-seed gourdcarcpiB0111
CSPI01G06020Silver-seed gourdcarcpiB0273
CSPI01G06020Silver-seed gourdcarcpiB0418
CSPI01G06020Silver-seed gourdcarcpiB0629
CSPI01G06020Cucumber (Chinese Long) v3cpicucB002
CSPI01G06020Cucumber (Chinese Long) v3cpicucB042
CSPI01G06020Cucumber (Chinese Long) v3cpicucB045
CSPI01G06020Watermelon (97103) v2cpiwmbB062
CSPI01G06020Watermelon (97103) v2cpiwmbB081
CSPI01G06020Wax gourdcpiwgoB008
CSPI01G06020Wax gourdcpiwgoB050
CSPI01G06020Wax gourdcpiwgoB070
CSPI01G06020Wild cucumber (PI 183967)cpicpiB000
CSPI01G06020Wild cucumber (PI 183967)cpicpiB028
CSPI01G06020Wild cucumber (PI 183967)cpicpiB031
CSPI01G06020Wild cucumber (PI 183967)cpicpiB041