Carg21534 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21534
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Acyl-CoA N-acyltransferase
Location	Cucurbita_argyrosperma_scaffold_118 : 46587 .. 46874 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACTCCCTGGCATCATCTCCGCCTCTTTCTCCTGCTCCGTTCGTCTCTGTAACCCCAACTGCGCGCATCCTCGGAACGTCGCTGTCTCCGCCCAATCCTCGCCGGTCAATGCTAGCTACAGCGTCTCCGACAAGGACCTCGAATCCCGAGGCTTCTTCCTCAACCTCGACCAAACGAACTCGGTCTTCGCTGCCGTTGGATTCCCTAAACGCGATCCGGATAAGATCAAGATTGCGTTGGAGCACACGGACGCGTTGCTCTGGATCCAATACAGTAAAACGTAG

mRNA sequence

ATGCTACTCCCTGGCATCATCTCCGCCTCTTTCTCCTGCTCCGTTCGTCTCTGTAACCCCAACTGCGCGCATCCTCGGAACGTCGCTGTCTCCGCCCAATCCTCGCCGGTCAATGCTAGCTACAGCGTCTCCGACAAGGACCTCGAATCCCGAGGCTTCTTCCTCAACCTCGACCAAACGAACTCGGTCTTCGCTGCCGTTGGATTCCCTAAACGCGATCCGGATAAGATCAAGATTGCGTTGGAGCACACGGACGCGTTGCTCTGGATCCAATACAGTAAAACGTAG

Coding sequence (CDS)

ATGCTACTCCCTGGCATCATCTCCGCCTCTTTCTCCTGCTCCGTTCGTCTCTGTAACCCCAACTGCGCGCATCCTCGGAACGTCGCTGTCTCCGCCCAATCCTCGCCGGTCAATGCTAGCTACAGCGTCTCCGACAAGGACCTCGAATCCCGAGGCTTCTTCCTCAACCTCGACCAAACGAACTCGGTCTTCGCTGCCGTTGGATTCCCTAAACGCGATCCGGATAAGATCAAGATTGCGTTGGAGCACACGGACGCGTTGCTCTGGATCCAATACAGTAAAACGTAG

Protein sequence

MLLPGIISASFSCSVRLCNPNCAHPRNVAVSAQSSPVNASYSVSDKDLESRGFFLNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT

Homology

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BLAST of Carg21534 vs. NCBI nr
Match: XP_022149104.1 (serotonin N-acetyltransferase 2, chloroplastic [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 79/104 (75.96%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRN--VAVSAQSSPVNASYSVSDKDLESRGFF---- 60
           MLLPGI S  FSCSVRL +   AHPRN  V+VSAQSSP NASYSVSDKDLESRGF     
Sbjct: 1   MLLPGISSVPFSCSVRLNSTISAHPRNVVVSVSAQSSPANASYSVSDKDLESRGFVLHRT 60

Query: 61  ---LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
              LNLD  NSVFAAVGFPKRDPDKI+ ALE+TDALLWIQYSKT
Sbjct: 61  VSDLNLDHLNSVFAAVGFPKRDPDKIRTALENTDALLWIQYSKT 104

[Close]

BLAST of Carg21534 vs. NCBI nr
Match: XP_022957301.1 (serotonin N-acetyltransferase 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 3.3e-31
Identity = 78/104 (75.00%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRN--VAVSAQSSPVNASYSVSDKDLESRGFF---- 60
           MLLP I SA FSCSVRL NP   + RN  VAVSAQ+SP N+SYSVSDKDLESRGF     
Sbjct: 1   MLLPAINSAPFSCSVRLTNPISVYSRNVAVAVSAQASPANSSYSVSDKDLESRGFMLHRT 60

Query: 61  ---LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
              LNLD  NSVFAAVGFPKRDPDKI+IALE+TDALLWIQYSKT
Sbjct: 61  VSDLNLDHLNSVFAAVGFPKRDPDKIRIALENTDALLWIQYSKT 104

[Close]

BLAST of Carg21534 vs. NCBI nr
Match: XP_022986854.1 (serotonin N-acetyltransferase 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 142.9 bits (359), Expect = 5.6e-31
Identity = 74/102 (72.55%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRNVAVSAQSSPVNASYSVSDKDLESRGFF------ 60
           MLLP I  A FSCS+RL NP   + RNVAV+AQ+SP N+SYSVSDKDLESRGF       
Sbjct: 1   MLLPAINCAPFSCSLRLTNPISVYSRNVAVAAQASPANSSYSVSDKDLESRGFMLHRTVS 60

Query: 61  -LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
            LNLD  NSVFAAVGFPKRDPDKI+IALE+TDALLWIQY KT
Sbjct: 61  DLNLDHLNSVFAAVGFPKRDPDKIRIALENTDALLWIQYGKT 102

[Close]

BLAST of Carg21534 vs. NCBI nr
Match: XP_023548469.1 (serotonin N-acetyltransferase 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.5 bits (358), Expect = 7.3e-31
Identity = 78/104 (75.00%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRN--VAVSAQSSPVNASYSVSDKDLESRGFF---- 60
           MLLP I SA FSCSVRL NP     RN  VAVSAQ+SP N+SYSVSDKDLESRGF     
Sbjct: 1   MLLPAINSAPFSCSVRLTNPISVFSRNVAVAVSAQASPANSSYSVSDKDLESRGFMLHRT 60

Query: 61  ---LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
              LNLD  NSVFAAVGFPKRDPDKI+IALE+TDALLWIQYSKT
Sbjct: 61  VSDLNLDHLNSVFAAVGFPKRDPDKIRIALENTDALLWIQYSKT 104

[Close]

BLAST of Carg21534 vs. NCBI nr
Match: XP_008446500.1 (PREDICTED: uncharacterized N-acetyltransferase ycf52 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 8.1e-30
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRNVAV--SAQSSPVNASYSVSDKDLESRGFF---- 60
           MLLP I SA FS S+RL NP   HPR VAV  SAQ+SP N+SYSVSDKDLESRGF     
Sbjct: 1   MLLPAITSAPFSSSLRLTNPISPHPRYVAVSISAQASPANSSYSVSDKDLESRGFVLHRT 60

Query: 61  ---LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
              LNLD  NSVFAAVGFPKRDPDKI++ALE+TDALLWIQY KT
Sbjct: 61  VSDLNLDHLNSVFAAVGFPKRDPDKIRVALENTDALLWIQYGKT 104

[Close]

BLAST of Carg21534 vs. TAIR10
Match: AT1G26220.1 (Acyl-CoA N-acyltransferases (NAT) superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.8e-19
Identity = 54/110 (49.09%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRNVAVSAQSSPV--------NASYSVSDKDLESRG 60
           M L G IS     S+RL   +  +P+N    + S             SYS+SD+DLESRG
Sbjct: 1   MFLGGTISTP-PASLRL--RSTLNPQNAVTQSSSQATFPAAMQRKPPSYSISDEDLESRG 60

Query: 61  FF-------LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
           F        LNLDQ NSVFAAVGFP+RD  KI++AL+HTDALLW++Y KT
Sbjct: 61  FLLRRTTEGLNLDQLNSVFAAVGFPRRDTAKIEVALQHTDALLWVEYEKT 107

[Close]

BLAST of Carg21534 vs. TrEMBL
Match: tr|A0A1S3BFV7|A0A1S3BFV7_CUCME (uncharacterized N-acetyltransferase ycf52 OS=Cucumis melo OX=3656 GN=LOC103489215 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.4e-30
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRNVAV--SAQSSPVNASYSVSDKDLESRGFF---- 60
           MLLP I SA FS S+RL NP   HPR VAV  SAQ+SP N+SYSVSDKDLESRGF     
Sbjct: 1   MLLPAITSAPFSSSLRLTNPISPHPRYVAVSISAQASPANSSYSVSDKDLESRGFVLHRT 60

Query: 61  ---LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
              LNLD  NSVFAAVGFPKRDPDKI++ALE+TDALLWIQY KT
Sbjct: 61  VSDLNLDHLNSVFAAVGFPKRDPDKIRVALENTDALLWIQYGKT 104

[Close]

BLAST of Carg21534 vs. TrEMBL
Match: tr|A0A0A0KR11|A0A0A0KR11_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608010 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.9e-28
Identity = 74/105 (70.48%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MLLPGIISASFS-CSVRLCNPNCAHPRNVAV--SAQSSPVNASYSVSDKDLESRGFF--- 60
           MLLP I SA FS  S+RL NP   HPR VAV  SAQ+SP N+SYSVSD+DLESRGF    
Sbjct: 1   MLLPAITSAPFSFSSLRLTNPISPHPRYVAVSISAQASPANSSYSVSDRDLESRGFVLHR 60

Query: 61  ----LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
               LNLD  NSVFAAVGFPKRDPDKI++ALE+TDALLWIQY KT
Sbjct: 61  TVSDLNLDHLNSVFAAVGFPKRDPDKIRVALENTDALLWIQYGKT 105

[Close]

BLAST of Carg21534 vs. TrEMBL
Match: tr|M5XLX1|M5XLX1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G298700 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 57/102 (55.88%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRNVAVSAQSSPVNASYSVSDKDLESRGFF------ 60
           MLL G ISA  SC           P NV VS ++S    +YS+SD+DL+SRGF       
Sbjct: 1   MLLRGTISAPLSCLRLRSTTTSTPPLNVPVSRRTSTTTNNYSISDQDLDSRGFLLHRTIA 60

Query: 61  -LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
            LNLD  N VF AVGFPKRDPDKI+ ALEHTDALLW++Y KT
Sbjct: 61  ELNLDHLNKVFVAVGFPKRDPDKIRTALEHTDALLWMEYRKT 102

[Close]

BLAST of Carg21534 vs. TrEMBL
Match: tr|A0A218XWU3|A0A218XWU3_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr024172 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 1   MLLPGIISAS-FSCSVRLCNPNCA-HPRNVAVSAQSSPVNA-SYSVSDKDLESRGFF--- 60
           ML    IS + FS +     P  A HPR++AVSA ++P  A S+S+SD  LESRGF    
Sbjct: 1   MLFRATISRTPFSAATLRLGPTAALHPRSLAVSASAAPAAATSFSISDAGLESRGFILHR 60

Query: 61  ----LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
               LNLDQ N++F AVGFPKRDPDKI+IALE+TD+L+WIQY KT
Sbjct: 61  TVCGLNLDQLNTIFVAVGFPKRDPDKIRIALENTDSLIWIQYEKT 105

[Close]

BLAST of Carg21534 vs. TrEMBL
Match: tr|A0A1J7GVT9|A0A1J7GVT9_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_00124 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-19
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MLLPGIISASFSCSVRLCNPNCAHPRNVAVSAQS-SPVNASY--SVSDKDLESRGFF--- 60
           MLL GIIS     S+RL +P   HPRNV VS+Q+ SP+ A+Y  S++D+ L+SRGF    
Sbjct: 1   MLLRGIISTPLPPSLRLHSP--IHPRNVTVSSQTQSPIAANYPLSITDESLDSRGFTFRR 60

Query: 61  ----LNLDQTNSVFAAVGFPKRDPDKIKIALEHTDALLWIQYSKT 96
               LNLD  N++F AVGFP+RD +KIK+ALEHT++L+W++Y KT
Sbjct: 61  SADGLNLDHLNTIFVAVGFPRRDTEKIKVALEHTESLIWVEYRKT 103

The following BLAST results are available for this feature:

BLAST of Carg21534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149104.1	1.5e-31	75.96	serotonin N-acetyltransferase 2, chloroplastic [Momordica charantia]	[more]
XP_022957301.1	3.3e-31	75.00	serotonin N-acetyltransferase 2, chloroplastic [Cucurbita moschata]	[more]
XP_022986854.1	5.6e-31	72.55	serotonin N-acetyltransferase 2, chloroplastic [Cucurbita maxima]	[more]
XP_023548469.1	7.3e-31	75.00	serotonin N-acetyltransferase 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_008446500.1	8.1e-30	72.12	PREDICTED: uncharacterized N-acetyltransferase ycf52 [Cucumis melo]	[more]

BLAST of Carg21534 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26220.1	7.8e-19	49.09	Acyl-CoA N-acyltransferases (NAT) superfamily protein	[more]

BLAST of Carg21534 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21534 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFV7\|A0A1S3BFV7_CUCME	5.4e-30	72.12	uncharacterized N-acetyltransferase ycf52 OS=Cucumis melo OX=3656 GN=LOC10348921...	[more]
tr\|A0A0A0KR11\|A0A0A0KR11_CUCSA	2.9e-28	70.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608010 PE=4 SV=1	[more]
tr\|M5XLX1\|M5XLX1_PRUPE	1.3e-20	55.88	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G298700 PE=4 SV=1	[more]
tr\|A0A218XWU3\|A0A218XWU3_PUNGR	1.1e-19	56.19	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr024172 PE=4 SV=1	[more]
tr\|A0A1J7GVT9\|A0A1J7GVT9_LUPAN	1.9e-19	53.33	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_00124 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21534-RA	Carg21534-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43626:SF2	ACYL-COA N-ACYLTRANSFERASE DOMAIN-CONTAINING PROTEIN	coord: 14..95
None	No IPR available	PANTHER	PTHR43626	FAMILY NOT NAMED	coord: 14..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21534	Cla020335	Watermelon (97103) v1	carwmB1044
Carg21534	Csa5G608010	Cucumber (Chinese Long) v2	carcuB1057
Carg21534	MELO3C012182	Melon (DHL92) v3.5.1	carmeB1010
Carg21534	ClCG05G023360	Watermelon (Charleston Gray)	carwcgB1016
Carg21534	CSPI05G24630	Wild cucumber (PI 183967)	carcpiB1079
Carg21534	Cucsa.284230	Cucumber (Gy14) v1	carcgyB1159
Carg21534	CmaCh04G015630	Cucurbita maxima (Rimu)	carcmaB1443
Carg21534	CmoCh04G016350	Cucurbita moschata (Rifu)	carcmoB1397
Carg21534	Lsi04G003230	Bottle gourd (USVL1VR-Ls)	carlsiB953
Carg21534	Cp4.1LG09g02520	Cucurbita pepo (Zucchini)	carcpeB1448
Carg21534	Cp4.1LG01g13220	Cucurbita pepo (Zucchini)	carcpeB1451
Carg21534	CsGy5G024130	Cucumber (Gy14) v2	carcgybB1026
Carg21534	MELO3C012182.2	Melon (DHL92) v3.6.1	carmedB1022
Carg21534	CsaV3_5G033650	Cucumber (Chinese Long) v3	carcucB1090
Carg21534	Cla97C05G105300	Watermelon (97103) v2	carwmbB1102
Carg21534	Bhi07G001172	Wax gourd	carwgoB1222

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21534	Carg01784	Silver-seed gourd	carcarB627

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21534	Cucurbita maxima (Rimu)	carcmaB1441
Carg21534	Cucurbita moschata (Rifu)	carcmoB1395