Carg21352 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21352
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA helicase
Location	Cucurbita_argyrosperma_scaffold_209 : 98851 .. 100047 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTATGTTGTTCTTCCGGGAGCCATGGCCGCAGCTCTCGTTTACTCTCCTCCAGATTATGCTTACTTCAAGAATGACGATACGTCTTCCAAATAGGATTCTTTCCCATTCTTCCACCTATCGGTTCGTCTCGATCTGCCTTCTCTTAGGGCTAGCGTTTTATAATTTTCCTCGTTATGCTGTTCTATTTCTAAAATTTTGATAGATGATTTGGTCTGATTGTGGGATATTTTACGTGAACGAACGTGTTATCTGCTATTGAGGAAATGCTCGTCGTGTTTGCAATCAGAATTGATGCTTTGTGCATCTGATACTCGTCGATAAAAAAATTGATACTGTTTTAATTGATGAATATGTATTCGAGATTTTGCTTAAGACGTATTTGAATTTTCTCTACATTTATTATCCTGCCTCGCATAACTTCGACACGAACTATAACGTGATAATTCTTTTCTTTTTTTAATTTGAATTTGAATTTGAGTACGCAGAATAAACTAAGTTTGAACTTGATGAAATAAGTAGGCTCTATTAGATCCAACATACAAGGTGTTTATCTTTTTATAGGATCACCATAATTGATTGTGTCGTCATCTAGATTACCAGCCATTTAATGGGCGTATTAGTAGTTGATCTCCCTAGTTTCCTCATTGATTTGCCTCTGGAACGTAAGGTTGCTTATTTTCGATAATAACCCCCCGGCACACTCAGGAAAAGAAAGAGCCTTTTCCTACAAACCAGCCATCCCATTGCCCAGGGGGTTTAAATGCTGAGTATCTTTGCTGCTTGATAATTCCTTGATTCCTGTATGGGTTTCAAACTATCTCTTAAATTTGCTGAAAATGTTTGAGAATCGCGTTCATTGCTATGTAAGCATTAGAAGCTTTTGTCTGGTTTATTTTCTTCCATCCGATAAAATTGGAATTGGAGTTGATTTTCTGTTTTCTTGTGGTACAGGACCGTCTGATCATGTAGAGCTTGCATTGGCAGATTTGTGTTCCTCTTTTGTTGATAATGGTGTGTAATGGACTTACTGCATTATGTCTCAATAATTAGTCATTTGTTTTACTTTTGGGGCCTGGTCTTCGGAGAAAGAACAATGAATTGTTTCCTTGAGGAATACTCAAAATGGGAAGTATATGTTTCCTT

mRNA sequence

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTATGTTGTTCTTCCGGGAGCCATGGCCGCAGCTCTCGTTTACTCTCCTCCAGATTATGCTTACTTCAAGAATGACGATACCCATTTAATGGGCGTATTAGTAGTTGATCTCCCTAGTTTCCTCATTGATTTGCCTCTGGAACGACCGTCTGATCATGTAGAGCTTGCATTGGCAGATTTGTGTTCCTCTTTTGTTGATAATGGTGTGTAATGGACTTACTGCATTATGTCTCAATAATTAGTCATTTGTTTTACTTTTGGGGCCTGGTCTTCGGAGAAAGAACAATGAATTGTTTCCTTGAGGAATACTCAAAATGGGAAGTATATGTTTCCTT

Coding sequence (CDS)

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTCGCCGTGTTCGCCAAGTATGTTGTTCTTCCGGGAGCCATGGCCGCAGCTCTCGTTTACTCTCCTCCAGATTATGCTTACTTCAAGAATGACGATACCCATTTAATGGGCGTATTAGTAGTTGATCTCCCTAGTTTCCTCATTGATTTGCCTCTGGAACGACCGTCTGATCATGTAGAGCTTGCATTGGCAGATTTGTGTTCCTCTTTTGTTGATAATGGTGTGTAA

Protein sequence

MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDDTHLMGVLVVDLPSFLIDLPLERPSDHVELALADLCSSFVDNGV

Homology

[Close]

BLAST of Carg21352 vs. NCBI nr
Match: KGN55532.1 (hypothetical protein Csa_4G664390 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 2.2e-10
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD 45
          MALMKGEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY Y K ++
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKNE 44

[Close]

BLAST of Carg21352 vs. NCBI nr
Match: PSR99489.1 (DNA helicase [Actinidia chinensis var. chinensis])

HSP 1 Score: 68.9 bits (167), Expect = 9.4e-09
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD 45
          M  M+GEPLV KLAV AKY VLPGAM AAL+YSPPDYAY K  D
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHD 44

[Close]

BLAST of Carg21352 vs. NCBI nr
Match: XP_008343347.1 (PREDICTED: uncharacterized protein LOC103406108 [Malus domestica])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 1   MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKND 44
           MALM+GEPLV KLA  AKYVV PGAMAAA++YSPPDY   KND
Sbjct: 555 MALMRGEPLVTKLAALAKYVVFPGAMAAAVIYSPPDYT-SKND 596

[Close]

BLAST of Carg21352 vs. NCBI nr
Match: OIT29793.1 (hypothetical protein A4A49_16418 [Nicotiana attenuata])

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYF 41
          MALMKGEPLVRK+A+ AKYVV PGAMAAA++YSPP YA +
Sbjct: 40 MALMKGEPLVRKVALIAKYVVFPGAMAAAVIYSPPTYASY 79

[Close]

BLAST of Carg21352 vs. NCBI nr
Match: PHU14072.1 (hypothetical protein BC332_15277 [Capsicum chinense])

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYA-YFK 42
          M+LMKGEPLVRK+A+ AKYVV PGAMAAA++YSPP YA Y+K
Sbjct: 1  MSLMKGEPLVRKVALIAKYVVFPGAMAAAVIYSPPAYASYYK 42

[Close]

BLAST of Carg21352 vs. TrEMBL
Match: tr|A0A0A0L4N8|A0A0A0L4N8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD 45
          MALMKGEPL+RKLAVFA Y+VLPGAMAAAL+YSPPDY Y K ++
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKNE 44

[Close]

BLAST of Carg21352 vs. TrEMBL
Match: tr|A0A2R6PZ99|A0A2R6PZ99_ACTCH (DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-09
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD 45
          M  M+GEPLV KLAV AKY VLPGAM AAL+YSPPDYAY K  D
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHD 44

[Close]

BLAST of Carg21352 vs. TrEMBL
Match: tr|K4AYJ4|K4AYJ4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-08
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYA-YFK 42
          M+LMKGEPLVRK+A+ AKY V PGAMAAA++YSPP YA YFK
Sbjct: 1  MSLMKGEPLVRKIALIAKYAVFPGAMAAAVIYSPPTYASYFK 42

[Close]

BLAST of Carg21352 vs. TrEMBL
Match: tr|A0A2G3C5V4|A0A2G3C5V4_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_15277 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-07
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYA-YFK 42
          M+LMKGEPLVRK+A+ AKYVV PGAMAAA++YSPP YA Y+K
Sbjct: 1  MSLMKGEPLVRKVALIAKYVVFPGAMAAAVIYSPPAYASYYK 42

[Close]

BLAST of Carg21352 vs. TrEMBL
Match: tr|A0A2N9EPM7|A0A2N9EPM7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4650 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDY 38
          M+LM+GEPLV KLA  AKYVVLPGAM AALVYSPPDY
Sbjct: 1  MSLMRGEPLVAKLAALAKYVVLPGAMVAALVYSPPDY 37

The following BLAST results are available for this feature:

BLAST of Carg21352 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55532.1	2.2e-10	79.55	hypothetical protein Csa_4G664390 [Cucumis sativus]	[more]
PSR99489.1	9.4e-09	75.00	DNA helicase [Actinidia chinensis var. chinensis]	[more]
XP_008343347.1	1.0e-07	76.74	PREDICTED: uncharacterized protein LOC103406108 [Malus domestica]	[more]
OIT29793.1	1.4e-07	77.50	hypothetical protein A4A49_16418 [Nicotiana attenuata]	[more]
PHU14072.1	1.8e-07	76.19	hypothetical protein BC332_15277 [Capsicum chinense]	[more]

BLAST of Carg21352 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg21352 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21352 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4N8\|A0A0A0L4N8_CUCSA	1.5e-10	79.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1	[more]
tr\|A0A2R6PZ99\|A0A2R6PZ99_ACTCH	6.2e-09	75.00	DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 ...	[more]
tr\|K4AYJ4\|K4AYJ4_SOLLC	9.0e-08	76.19	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
tr\|A0A2G3C5V4\|A0A2G3C5V4_CAPCH	1.2e-07	76.19	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_15277 PE=4 SV=1	[more]
tr\|A0A2N9EPM7\|A0A2N9EPM7_FAGSY	2.0e-07	83.78	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4650 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21352-RA	Carg21352-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21352	Csa4G664390	Cucumber (Chinese Long) v2	carcuB0388
Carg21352	ClCG11G018970	Watermelon (Charleston Gray)	carwcgB0349
Carg21352	CSPI04G27190	Wild cucumber (PI 183967)	carcpiB0393
Carg21352	Cucsa.272360	Cucumber (Gy14) v1	carcgyB0417
Carg21352	CmaCh01G020340	Cucurbita maxima (Rimu)	carcmaB0503
Carg21352	CmoCh01G020910	Cucurbita moschata (Rifu)	carcmoB0486
Carg21352	Lsi04G018330	Bottle gourd (USVL1VR-Ls)	carlsiB324
Carg21352	CsaV3_4G037570	Cucumber (Chinese Long) v3	carcucB0392
Carg21352	Cla97C11G225090	Watermelon (97103) v2	carwmbB0373

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg21352	Carg08608	Silver-seed gourd	carcarB120

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21352	Cucurbita moschata (Rifu)	carcmoB0484
Carg21352	Cucurbita moschata (Rifu)	carcmoB0485
Carg21352	Cucurbita moschata (Rifu)	carcmoB0487
Carg21352	Cucurbita pepo (Zucchini)	carcpeB0500
Carg21352	Cucurbita pepo (Zucchini)	carcpeB0497
Carg21352	Cucurbita pepo (Zucchini)	carcpeB0498
Carg21352	Cucurbita pepo (Zucchini)	carcpeB0499
Carg21352	Bottle gourd (USVL1VR-Ls)	carlsiB326
Carg21352	Melon (DHL92) v3.5.1	carmeB0362
Carg21352	Melon (DHL92) v3.5.1	carmeB0363
Carg21352	Melon (DHL92) v3.6.1	carmedB0367
Carg21352	Melon (DHL92) v3.6.1	carmedB0368
Carg21352	Watermelon (Charleston Gray)	carwcgB0350
Carg21352	Watermelon (97103) v1	carwmB0348
Carg21352	Watermelon (97103) v1	carwmB0350
Carg21352	Watermelon (97103) v2	carwmbB0375
Carg21352	Wax gourd	carwgoB0440
Carg21352	Silver-seed gourd	carcarB248
Carg21352	Cucumber (Gy14) v2	carcgybB0368
Carg21352	Cucumber (Gy14) v1	carcgyB0416
Carg21352	Cucurbita maxima (Rimu)	carcmaB0501
Carg21352	Cucurbita maxima (Rimu)	carcmaB0502
Carg21352	Cucurbita maxima (Rimu)	carcmaB0504