Carg08608 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08608
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA helicase
Location	Cucurbita_argyrosperma_scaffold_057 : 134609 .. 136737 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTAATGAGAGGAGAGCCGCTGGTGAGGAAACTCGCTGTGTTCGCCAAGTACGCTGTTCTGCCGGCAGCCATGGCCGCTGCTCTCCTTTACTCTCCTCCCGATTACGTTTATTACAAGAATGACGATAAGTCATCCAAATAGGACACTTTCCCCCGCCTGTTCGGTTCGTCTCGATCTGTCATCCCTTAGGGTCAGCGCTTTTCAATTTCATCCTTATTCTGAGTTTTTTCTAAGATATTGATAGATGATTTTGCCTGACTGCTGCATATTATATGTCAACGAACGTGTTCCCTTCTATTTGAATAAATGTTTGGTGTGGTTGCAATCAGCAATTGATGTTTCGTGGATCTGATAATCATTGGCTACGAAATTGATAATGATCATAATTGACGGATTTGTACTTGTTTTCGTGACTTTCCGTAGCTAAGAAACGTGTTCTTATACTTCCCTCGTCGTGGTGATTGAGGTATACAAAACGTATTTGAACTTGTCTCTACATTTTTTGCCTTTCTCTGAGTAACTTCTAATCGAATCTTTTCTTGATAACTCTGTTTTGACTTTGCGGGAAATTAGACCGAATAAACTAGGTTTAGAATGGATGAAAGTAGGCCTTATTAGGTCCAACTTTGCAGACTTTTTGTTTTTCTAGGATCATCATCTAGATGACCAGCCATTTAATGGGCATATTAGTAGTTGATCTCCCTAACTTCATCATTGATTATGCCTCTATTGCTTGAACGTAAGGTTGCTTATTCTCGATGGTAAACCCCTGGACACACTGCGCACATGTAAAAGAAAATTTCCTAAACGCCAGCTATCCATTGTTGAGGATTGTTGAGAGTGAGTTCCACGTTGGCTAATTTAGGCAATGATCATAGCTTTATATGCAAGGAATACTATCTCCCTTGGTATTAGGCCTTTTGGGGAAGCCGAAAGCAAAGCCACGAGAGCTTATGCTCAAAGTGGACAATATCGTACCATGTGGAGGGTTGTTATTCCTAACATCCATGCCCATGGACTTTGAAATTTACAATCTTTGCTGCATCATAATTTCTTGATACCTCGACGTATGGGTTTCAGACTATGGCTTTAATTTGCAGAAAAAATGTTTGGAATTGCGTTGAATGCTATATGAGTATTATGAGCTCTGGCGTTGATTTTCTGTTCTCTTGTTATGCAGGACCGTCTGATCATGTAGGCTTGCATTTGCAGAGTTGTATTCCTCTCATGTTGATAATGGTGTGTACTGGACTTATTATCATCATCTCTCAATAACTCGTAGTTTGTTTTACTTTTGTGGCTTCATCTTCGGAGAAAAAAATAATAATTTGTTTCCTTGAAGAATATTCAATATGGGAAGTATAAATTTCCTGTTCTTATTTTTCTTTTCGTTCCCTTAATAAATTTTGAAGAAAGTTTCTGGGATAACATGGCCGTGAAAGTGGAGACTGAACCATGAGATGGAAGTGGGAACTATATGAGATACATGCCTGTAAAAGTTATGTGCTCGTATTAAAATTTTACAGTTATAAAATGGTGGATATGAAGAAATCCCACGATCAGAACAACTCATTTTCATTCACACAGTCCATATAGTACCAACCCTTTGGACCTGTCCACTGTTGAATTGAAACAAAATTTCCAGATTTACGTGACTGGGAGTGTTGACGATGATGGAGGATAGAGGTGTTAATGTCTGGTTGTGATAGAAATATTTTGAATTTTTGTAAAACAAACAAGGTAGGAGTTTCAACTCCGATCGCTTTCAATGTTTGGTGCGACATAAAGTAGAGGGAGCTCAAAGATCAACATCATGAGAAGGACAAGTTTAGGTGATTGGAGTAGTTTAGCCAACTCTTGCGACTCCATGTCCAGCAGTGCAAGGGATATGAATTTGGGGCCTCACCTCACCCTTGGTTTTGCAATATGAGATTATGTTGAAATTATATTCCCTGGAAATTTTTTGAACTGTTTTATTGGATAGAATGCATGGAAACAAGAGGATGGTGGAATACAATTCCAACTTAGCCGGGTATTCTTGTGGTCGATTAACTCTGTTTTTTTAGGAATGGGTTGGGGACAAAACAACGAAGGATGAGGGAGTTGGAGAGTTTTGGGTGTAA

mRNA sequence

ATGGCGCTAATGAGAGGAGAGCCGCTGGTGAGGAAACTCGCTGTGTTCGCCAAGTACGCTGTTCTGCCGGCAGCCATGGCCGCTGCTCTCCTTTACTCTCCTCCCGATTACGATCATCATCTAGATGACCAGCCATTTAATGGGCATATTAGACCGTCTGATCATGTAGGCTTGCATTTGCAGAGTTGTATTCCTCTCATGTTGATAATGAATGCATGGAAACAAGAGGATGGTGGAATACAATTCCAACTTAGCCGGGAATGGGTTGGGGACAAAACAACGAAGGATGAGGGAGTTGGAGAGTTTTGGGTGTAA

Coding sequence (CDS)

ATGGCGCTAATGAGAGGAGAGCCGCTGGTGAGGAAACTCGCTGTGTTCGCCAAGTACGCTGTTCTGCCGGCAGCCATGGCCGCTGCTCTCCTTTACTCTCCTCCCGATTACGATCATCATCTAGATGACCAGCCATTTAATGGGCATATTAGACCGTCTGATCATGTAGGCTTGCATTTGCAGAGTTGTATTCCTCTCATGTTGATAATGAATGCATGGAAACAAGAGGATGGTGGAATACAATTCCAACTTAGCCGGGAATGGGTTGGGGACAAAACAACGAAGGATGAGGGAGTTGGAGAGTTTTGGGTGTAA

Protein sequence

MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDYDHHLDDQPFNGHIRPSDHVGLHLQSCIPLMLIMNAWKQEDGGIQFQLSREWVGDKTTKDEGVGEFWV

Homology

[Close]

BLAST of Carg08608 vs. NCBI nr
Match: KGN55532.1 (hypothetical protein Csa_4G664390 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 6.2e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
          MALM+GEPL+RKLAVFA Y VLP AMAAAL+YSPPDY
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDY 37

[Close]

BLAST of Carg08608 vs. NCBI nr
Match: PSR99489.1 (DNA helicase [Actinidia chinensis var. chinensis])

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-06
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
          M  MRGEPLV KLAV AKYAVLP AM AAL+YSPPDY
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDY 37

[Close]

BLAST of Carg08608 vs. NCBI nr
Match: XP_008343347.1 (PREDICTED: uncharacterized protein LOC103406108 [Malus domestica])

HSP 1 Score: 59.7 bits (143), Expect = 6.8e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1   MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
           MALMRGEPLV KLA  AKY V P AMAAA++YSPPDY
Sbjct: 555 MALMRGEPLVTKLAALAKYVVFPGAMAAAVIYSPPDY 591

[Close]

BLAST of Carg08608 vs. NCBI nr
Match: ESR48667.1 (hypothetical protein CICLE_v10003083mg [Citrus clementina] >KDO85214.1 hypothetical protein CISIN_1g035474mg [Citrus sinensis])

HSP 1 Score: 57.8 bits (138), Expect = 2.6e-05
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
          MA+MRGEPLV KLA  AKY +LP +MAAAL+YSPP Y
Sbjct: 1  MAIMRGEPLVAKLAALAKYVILPGSMAAALIYSPPQY 37

[Close]

BLAST of Carg08608 vs. NCBI nr
Match: OIT29793.1 (hypothetical protein A4A49_16418 [Nicotiana attenuata])

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-05
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
          MALM+GEPLVRK+A+ AKY V P AMAAA++YSPP Y
Sbjct: 40 MALMKGEPLVRKVALIAKYVVFPGAMAAAVIYSPPTY 76

[Close]

BLAST of Carg08608 vs. TrEMBL
Match: tr|A0A0A0L4N8|A0A0A0L4N8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-07
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
          MALM+GEPL+RKLAVFA Y VLP AMAAAL+YSPPDY
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDY 37

[Close]

BLAST of Carg08608 vs. TrEMBL
Match: tr|A0A2R6PZ99|A0A2R6PZ99_ACTCH (DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
          M  MRGEPLV KLAV AKYAVLP AM AAL+YSPPDY
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDY 37

[Close]

BLAST of Carg08608 vs. TrEMBL
Match: tr|A0A2N9EPM7|A0A2N9EPM7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4650 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-06
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
          M+LMRGEPLV KLA  AKY VLP AM AAL+YSPPDY
Sbjct: 1  MSLMRGEPLVAKLAALAKYVVLPGAMVAALVYSPPDY 37

[Close]

BLAST of Carg08608 vs. TrEMBL
Match: tr|K4AYJ4|K4AYJ4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.0e-05
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDYDHHLDDQ 45
          M+LM+GEPLVRK+A+ AKYAV P AMAAA++YSPP Y  +   Q
Sbjct: 1  MSLMKGEPLVRKIALIAKYAVFPGAMAAAVIYSPPTYASYFKPQ 44

[Close]

BLAST of Carg08608 vs. TrEMBL
Match: tr|V4T670|V4T670_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003083mg PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 1  MALMRGEPLVRKLAVFAKYAVLPAAMAAALLYSPPDY 38
          MA+MRGEPLV KLA  AKY +LP +MAAAL+YSPP Y
Sbjct: 1  MAIMRGEPLVAKLAALAKYVILPGSMAAALIYSPPQY 37

The following BLAST results are available for this feature:

BLAST of Carg08608 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55532.1	6.2e-07	83.78	hypothetical protein Csa_4G664390 [Cucumis sativus]	[more]
PSR99489.1	3.1e-06	81.08	DNA helicase [Actinidia chinensis var. chinensis]	[more]
XP_008343347.1	6.8e-06	78.38	PREDICTED: uncharacterized protein LOC103406108 [Malus domestica]	[more]
ESR48667.1	2.6e-05	72.97	hypothetical protein CICLE_v10003083mg [Citrus clementina] >KDO85214.1 hypotheti...	[more]
OIT29793.1	3.4e-05	72.97	hypothetical protein A4A49_16418 [Nicotiana attenuata]	[more]

BLAST of Carg08608 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg08608 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08608 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L4N8\|A0A0A0L4N8_CUCSA	4.1e-07	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1	[more]
tr\|A0A2R6PZ99\|A0A2R6PZ99_ACTCH	2.0e-06	81.08	DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 ...	[more]
tr\|A0A2N9EPM7\|A0A2N9EPM7_FAGSY	5.9e-06	78.38	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4650 PE=4 SV=1	[more]
tr\|K4AYJ4\|K4AYJ4_SOLLC	1.0e-05	63.64	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
tr\|V4T670\|V4T670_9ROSI	1.7e-05	72.97	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003083mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08608-RA	Carg08608-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08608	ClCG11G018970	Watermelon (Charleston Gray)	carwcgB0102

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg08608	Carg21352	Silver-seed gourd	carcarB120

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08608	Cucumber (Gy14) v2	carcgybB0113
Carg08608	Cucumber (Gy14) v1	carcgyB0125
Carg08608	Cucurbita maxima (Rimu)	carcmaB0134
Carg08608	Cucurbita maxima (Rimu)	carcmaB0136
Carg08608	Cucurbita moschata (Rifu)	carcmoB0144
Carg08608	Cucurbita moschata (Rifu)	carcmoB0146
Carg08608	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08608	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08608	Wild cucumber (PI 183967)	carcpiB0118
Carg08608	Cucumber (Chinese Long) v2	carcuB0113
Carg08608	Cucumber (Chinese Long) v3	carcucB0122
Carg08608	Melon (DHL92) v3.5.1	carmeB0107
Carg08608	Melon (DHL92) v3.6.1	carmedB0109
Carg08608	Watermelon (97103) v1	carwmB0104
Carg08608	Watermelon (97103) v2	carwmbB0106
Carg08608	Wax gourd	carwgoB0119