Carg21298 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21298
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MYB transcription factor
Location	Cucurbita_argyrosperma_scaffold_128 : 240873 .. 241714 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAACATCATCATGTTGTTCCAAAGGAGGCTTACACAAAGGGCCATGGACTGCTAGAGAAGATGCATTGCTTGTCAGCTATATTCAACAACATGGTGAAGGCCATTGGAGAGCCTTGCCAAAGAAAGCTGGTGAGTTCTTCAATCTTTTCTTCTCCATTCATGGAGTTGTTTCTTAAAACGCTCTCTGTGAATGAATTTAGGTTTGCTTCGATGTGGAAAGAGTTGCAGATTGAGATGGATGAACTATCTTCGACCCGACATTAAACGTGGCAACATAACCCCTGACGAGGACGACTTGATTATAAAACTACACACTTTACTTGGCAACAGGTGGTCTCTCATTGCCGGTAGGCTTCCGGGCCGAACCGATAATGAGATAAAAAACTACTGGAATTCCCATCTAAGCAAAAAGTTGGCAATAACCAAAGACAATGCAGGAGAGGCAAAGAAGGAGAAGGTCATCACTACAAACTCTGCAAATGGAGAGACATCAGACGGTAGAAAACCGGCCCGAGTTTCGAACGGCGATAACTCGAGCAGTGGCATGGCAAGCGGGCTACCTTTTTTGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGGAGGGAAGAAATGGAAGAAAGTGGGGATCTTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGGATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

mRNA sequence

ATGGGAAGAACATCATCATGTTGTTCCAAAGGAGGCTTACACAAAGGGCCATGGACTGCTAGAGAAGATGCATTGCTTGTCAGCTATATTCAACAACATGGTGAAGGCCATTGGAGAGCCTTGCCAAAGAAAGCTGGAGAGGCAAAGAAGGAGAAGGTCATCACTACAAACTCTGCAAATGGAGAGACATCAGACGGTAGAAAACCGGCCCGAGTTTCGAACGGCGATAACTCGAGCAGTGGCATGGCAAGCGGGCTACCTTTTTTGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGGAGGGAAGAAATGGAAGAAAGTGGGGATCTTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGGATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

Coding sequence (CDS)

ATGGGAAGAACATCATCATGTTGTTCCAAAGGAGGCTTACACAAAGGGCCATGGACTGCTAGAGAAGATGCATTGCTTGTCAGCTATATTCAACAACATGGTGAAGGCCATTGGAGAGCCTTGCCAAAGAAAGCTGGAGAGGCAAAGAAGGAGAAGGTCATCACTACAAACTCTGCAAATGGAGAGACATCAGACGGTAGAAAACCGGCCCGAGTTTCGAACGGCGATAACTCGAGCAGTGGCATGGCAAGCGGGCTACCTTTTTTGTCGGGAAATCAAGGAGGTGGCGGCGAGACTGATCGGTTGGCTGTGAATGGAGGAGGAGAGATTGAGAAGCTGAAAGGGAGGGAAGAAATGGAAGAAAGTGGGGATCTTTTTGGTGGGTGTGAAGTTTTCTATGAAGGGTCGTGGAATTGTTCTGAAAATGGAGAGAGGATTGAAGAGGTTGAAGATGATTCTTATCAACAGCTACTCAGCCTGCAGGGAGAAGATTACATTCAGTTAGAGTCCTTCATTGATTACTTCTTAATCTGA

Protein sequence

MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGEAKKEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDRLAVNGGGEIEKLKGREEMEESGDLFGGCEVFYEGSWNCSENGERIEEVEDDSYQQLLSLQGEDYIQLESFIDYFLI

Homology

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: XP_022928836.1 (transcription factor WER-like [Cucurbita moschata])

HSP 1 Score: 314.7 bits (805), Expect = 2.0e-82
Identity = 175/256 (68.36%), Postives = 176/256 (68.75%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK---------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKK                
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKRGNITPDEDDLIIKLHTLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLAIT 120

Query: 121 ---AGEAKKEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDR 178
              AGEAKKEKVITTNSANGETSD RKPARVSNGDNSS+GMASGLPFLSGNQGGGGETDR
Sbjct: 121 KDNAGEAKKEKVITTNSANGETSDSRKPARVSNGDNSSTGMASGLPFLSGNQGGGGETDR 180

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: XP_022969770.1 (transcription factor MYB8-like [Cucurbita maxima])

HSP 1 Score: 306.2 bits (783), Expect = 7.1e-80
Identity = 172/255 (67.45%), Postives = 173/255 (67.84%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  -------------------------------------------EAK-------------- 120
                                                      E K              
Sbjct: 61  YLRPDIKRGNITPDEDDLIIKLHTLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKLAIT 120

Query: 121 -------KEKVITTNSANGETSDGRKPARVSNGDNSSSGMASGLPFLSGNQGGGGETDRL 178
                  KEK+ITTNS NGETSD RKPARVSNGDNS SGMASGLPFLSGNQGGGGETDRL
Sbjct: 121 KDNAGEAKEKIITTNSPNGETSDSRKPARVSNGDNSGSGMASGLPFLSGNQGGGGETDRL 180

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: XP_004143947.1 (PREDICTED: myb-related protein 308-like [Cucumis sativus] >KGN49997.1 hypothetical protein Csa_5G148680 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 8.0e-47
Identity = 133/263 (50.57%), Postives = 151/263 (57.41%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLV+YIQQ+GEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ----------------------------------------------------EAKKEKVI 120
                                                                +K+  +I
Sbjct: 61  YLRPDIKRGNITADEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRLAII 120

Query: 121 TTNSA-------NGETSDGRKPARV---SNGDNSSSGMASGLPFLSGNQG-------GGG 178
           T ++A       NGETS+ RK   V    N DN S+G+ S L   SGNQG       GGG
Sbjct: 121 TKDNAGEAKKESNGETSNTRKATEVWSFCNDDNLSNGVGSELLLSSGNQGGEDGGSRGGG 180

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: XP_008437429.1 (PREDICTED: transcription factor WER-like [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 7.5e-45
Identity = 128/263 (48.67%), Postives = 144/263 (54.75%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLV+YIQQ+GEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ---------------------------------------------------EAKKEKVIT 120
                                                                 K   IT
Sbjct: 61  YLRPDIKRGNITADEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRLAIT 120

Query: 121 TNSA-------NGETSDGRKPARVS---NGDNSSSGMAS--------GLPFLSGNQGGGG 178
            ++A       NGETS+ RKP  VS   N DNSS+G+ S                     
Sbjct: 121 KDNAGETKKESNGETSNTRKPTEVSSFCNDDNSSNGIGSEXXXXXXXXXXXXXXXXXXXX 180

[Close]

BLAST of Carg21298 vs. NCBI nr
Match: XP_022158366.1 (transcription factor MYB8-like [Momordica charantia])

HSP 1 Score: 168.7 bits (426), Expect = 1.8e-38
Identity = 113/262 (43.13%), Postives = 126/262 (48.09%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCS GGLHKGPWTAREDALLV+YIQQHGEGHWR+LPKKAG              
Sbjct: 1   MGRTSSCCSNGGLHKGPWTAREDALLVNYIQQHGEGHWRSLPKKAGLLRCGKSCRLRWMN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPDIKRGNITADEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRLAVT 120

Query: 121 -------EAKKEKV-ITTNSANGETSDGRKPARVS---NGDNSSSGMASGLPFLSGNQGG 178
                  +A+KE++ I +NS NGE+S   KP RVS   + DNS                 
Sbjct: 121 ATENTRNQARKERITIPSNSENGESSKTTKPTRVSSFCDEDNSXXXXXXXXXXXXXXXXX 180

[Close]

BLAST of Carg21298 vs. TAIR10
Match: AT4G21440.1 (MYB-like 102)

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-12
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 5  SSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          S CC K GL KGPWT+ ED  LV YIQ+HG G+WR LPK AG
Sbjct: 4  SPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAG 45

[Close]

BLAST of Carg21298 vs. TAIR10
Match: AT3G13540.1 (myb domain protein 5)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-11
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 3  RTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          +T+ CC+K G+ +GPWT  ED +LVS+I++ GEG WR+LPK+AG
Sbjct: 13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG 56

[Close]

BLAST of Carg21298 vs. TAIR10
Match: AT3G28910.1 (myb domain protein 30)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 7  CCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          CC KGG+ KGPWT  ED +LV+YIQ+HG G+WRA+P   G
Sbjct: 6  CCDKGGVKKGPWTPEEDIILVTYIQEHGPGNWRAVPTNTG 45

[Close]

BLAST of Carg21298 vs. TAIR10
Match: AT3G01140.1 (myb domain protein 106)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 5  SSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          S CC K GL KGPWT  ED  L++YI++HG G WR+LP+KAG
Sbjct: 47 SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAG 88

[Close]

BLAST of Carg21298 vs. TAIR10
Match: AT4G28110.1 (myb domain protein 41)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR S CC K G+ KGPWTA ED  L+ YI+ HG G+WR LPK AG
Sbjct: 1  MGR-SPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAG 45

[Close]

BLAST of Carg21298 vs. Swiss-Prot
Match: sp|Q7XBH4|MYB4_ORYSJ (Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-11
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR + CC K GL KGPWT  ED +LV++IQ+HG G+WRALPK+AG
Sbjct: 1  MGR-APCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAG 45

[Close]

BLAST of Carg21298 vs. Swiss-Prot
Match: sp|Q9LDR8|MY102_ARATH (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 5  SSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          S CC K GL KGPWT+ ED  LV YIQ+HG G+WR LPK AG
Sbjct: 4  SPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAG 45

[Close]

BLAST of Carg21298 vs. Swiss-Prot
Match: sp|Q9LE63|MY106_ARATH (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR S CC K GL KGPWT  ED  L++YI++HG G WR+LP+KAG
Sbjct: 1  MGR-SPCCDKAGLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAG 45

[Close]

BLAST of Carg21298 vs. Swiss-Prot
Match: sp|Q38850|MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana OX=3702 GN=MYB5 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 3  RTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          +T+ CC+K G+ +GPWT  ED +LVS+I++ GEG WR+LPK+AG
Sbjct: 13 KTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG 56

[Close]

BLAST of Carg21298 vs. Swiss-Prot
Match: sp|P27898|MYBP_MAIZE (Myb-related protein P OS=Zea mays OX=4577 GN=P PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGRT  CC K GL +G WTA ED LL +YI +HGEG WR+LPK AG
Sbjct: 1  MGRT-PCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAG 45

[Close]

BLAST of Carg21298 vs. TrEMBL
Match: tr|A0A0A0KNQ6|A0A0A0KNQ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148680 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.3e-47
Identity = 133/263 (50.57%), Postives = 151/263 (57.41%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLV+YIQQ+GEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ----------------------------------------------------EAKKEKVI 120
                                                                +K+  +I
Sbjct: 61  YLRPDIKRGNITADEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRLAII 120

Query: 121 TTNSA-------NGETSDGRKPARV---SNGDNSSSGMASGLPFLSGNQG-------GGG 178
           T ++A       NGETS+ RK   V    N DN S+G+ S L   SGNQG       GGG
Sbjct: 121 TKDNAGEAKKESNGETSNTRKATEVWSFCNDDNLSNGVGSELLLSSGNQGGEDGGSRGGG 180

[Close]

BLAST of Carg21298 vs. TrEMBL
Match: tr|A0A1S3AU00|A0A1S3AU00_CUCME (transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103482846 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 4.9e-45
Identity = 128/263 (48.67%), Postives = 144/263 (54.75%), Query Frame = 0


Query: 1   MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG-------------- 60
           MGRTSSCCSKGGLHKGPWTAREDALLV+YIQQ+GEGHWRALPKKAG              
Sbjct: 1   MGRTSSCCSKGGLHKGPWTAREDALLVNYIQQNGEGHWRALPKKAGLLRCGKSCRLRWMN 60

Query: 61  ---------------------------------------------------EAKKEKVIT 120
                                                                 K   IT
Sbjct: 61  YLRPDIKRGNITADEDDLIIKLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKRLAIT 120

Query: 121 TNSA-------NGETSDGRKPARVS---NGDNSSSGMAS--------GLPFLSGNQGGGG 178
            ++A       NGETS+ RKP  VS   N DNSS+G+ S                     
Sbjct: 121 KDNAGETKKESNGETSNTRKPTEVSSFCNDDNSSNGIGSEXXXXXXXXXXXXXXXXXXXX 180

[Close]

BLAST of Carg21298 vs. TrEMBL
Match: tr|A0A218WH59|A0A218WH59_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018068 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-13
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR + CCSK GLHKGPW+ +EDA+L++YIQQHGEGHWR+LPKKAG
Sbjct: 1  MGR-APCCSKVGLHKGPWSTKEDAVLINYIQQHGEGHWRSLPKKAG 45

[Close]

BLAST of Carg21298 vs. TrEMBL
Match: tr|A0A1U7ZUZ2|A0A1U7ZUZ2_NELNU (myb-related protein 308-like OS=Nelumbo nucifera OX=4432 GN=LOC104594282 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-13
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR + CCSK GLH+GPWTARED LL+ YIQ HGEGHWR+LPKKAG
Sbjct: 1  MGR-APCCSKVGLHRGPWTAREDTLLIKYIQAHGEGHWRSLPKKAG 45

[Close]

BLAST of Carg21298 vs. TrEMBL
Match: tr|A0A096ZX30|A0A096ZX30_PHAEQ (MYB transcription factor 1 OS=Phalaenopsis equestris OX=78828 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-13
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1  MGRTSSCCSKGGLHKGPWTAREDALLVSYIQQHGEGHWRALPKKAG 47
          MGR + CCSK GLH+GPWTAREDALL SYIQ+HGEG+WR+LPKKAG
Sbjct: 1  MGR-APCCSKVGLHRGPWTAREDALLTSYIQKHGEGNWRSLPKKAG 45

The following BLAST results are available for this feature:

BLAST of Carg21298 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928836.1	2.0e-82	68.36	transcription factor WER-like [Cucurbita moschata]	[more]
XP_022969770.1	7.1e-80	67.45	transcription factor MYB8-like [Cucurbita maxima]	[more]
XP_004143947.1	8.0e-47	50.57	PREDICTED: myb-related protein 308-like [Cucumis sativus] >KGN49997.1 hypothetic...	[more]
XP_008437429.1	7.5e-45	48.67	PREDICTED: transcription factor WER-like [Cucumis melo]	[more]
XP_022158366.1	1.8e-38	43.13	transcription factor MYB8-like [Momordica charantia]	[more]

BLAST of Carg21298 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21440.1	5.9e-12	66.67	MYB-like 102	[more]
AT3G13540.1	1.3e-11	56.82	myb domain protein 5	[more]
AT3G28910.1	1.7e-11	62.50	myb domain protein 30	[more]
AT3G01140.1	1.7e-11	61.90	myb domain protein 106	[more]
AT4G28110.1	1.7e-11	63.04	myb domain protein 41	[more]

BLAST of Carg21298 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q7XBH4\|MYB4_ORYSJ	6.3e-11	65.22	Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 ...	[more]
sp\|Q9LDR8\|MY102_ARATH	1.1e-10	66.67	Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1	[more]
sp\|Q9LE63\|MY106_ARATH	1.1e-10	63.04	Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1	[more]
sp\|Q38850\|MYB5_ARATH	2.4e-10	56.82	Transcription repressor MYB5 OS=Arabidopsis thaliana OX=3702 GN=MYB5 PE=1 SV=1	[more]
sp\|P27898\|MYBP_MAIZE	2.4e-10	65.22	Myb-related protein P OS=Zea mays OX=4577 GN=P PE=2 SV=1	[more]

BLAST of Carg21298 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KNQ6\|A0A0A0KNQ6_CUCSA	5.3e-47	50.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G148680 PE=4 SV=1	[more]
tr\|A0A1S3AU00\|A0A1S3AU00_CUCME	4.9e-45	48.67	transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103482846 PE=4 SV=1	[more]
tr\|A0A218WH59\|A0A218WH59_PUNGR	5.0e-13	76.09	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018068 PE=4 SV=1	[more]
tr\|A0A1U7ZUZ2\|A0A1U7ZUZ2_NELNU	5.0e-13	78.26	myb-related protein 308-like OS=Nelumbo nucifera OX=4432 GN=LOC104594282 PE=4 SV...	[more]
tr\|A0A096ZX30\|A0A096ZX30_PHAEQ	5.0e-13	80.43	MYB transcription factor 1 OS=Phalaenopsis equestris OX=78828 GN=MYB1 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg21298-RA	Carg21298-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 9..67 e-value: 4.7E-8 score: 34.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..87
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..45
None	No IPR available	PANTHER	PTHR10641:SF586	MYB TRANSCRIPTION FACTOR-RELATED	coord: 1..45
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 15..46 e-value: 1.2E-6 score: 28.4
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 17..41 e-value: 1.47905E-4 score: 36.3994
IPR017877	Myb-like domain	PROSITE	PS50090	MYB_LIKE	coord: 10..52 score: 6.748
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 10..46

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg21298	CmaCh15G013040	Cucurbita maxima (Rimu)	carcmaB0505
Carg21298	CmoCh15G013710	Cucurbita moschata (Rifu)	carcmoB0488
Carg21298	Cp4.1LG00g00600	Cucurbita pepo (Zucchini)	carcpeB0501
Carg21298	CsGy5G001690	Cucumber (Gy14) v2	carcgybB0370
Carg21298	Cla97C01G001670	Watermelon (97103) v2	carwmbB0376
Carg21298	Bhi12G000100	Wax gourd	carwgoB0441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg21298	Silver-seed gourd	carcarB385
Carg21298	Cucumber (Gy14) v1	carcgyB0420
Carg21298	Cucurbita maxima (Rimu)	carcmaB0507
Carg21298	Cucurbita moschata (Rifu)	carcmoB0490
Carg21298	Cucurbita pepo (Zucchini)	carcpeB0505
Carg21298	Wild cucumber (PI 183967)	carcpiB0395
Carg21298	Cucumber (Chinese Long) v2	carcuB0390
Carg21298	Cucumber (Chinese Long) v3	carcucB0394
Carg21298	Bottle gourd (USVL1VR-Ls)	carlsiB327
Carg21298	Melon (DHL92) v3.5.1	carmeB0364
Carg21298	Melon (DHL92) v3.6.1	carmedB0369
Carg21298	Watermelon (Charleston Gray)	carwcgB0352
Carg21298	Watermelon (97103) v1	carwmB0352