Carg20937 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20937
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	zinc finger CCCH domain-containing protein 62-like isoform X5
Location	Cucurbita_argyrosperma_scaffold_141 : 667714 .. 668410 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGATCTTGTCTCTGATCATAAATGCAAGCCAATGACCAATATTGCTGAGTTTTCTTCATCATTTGTATGTTTTACTCAGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAAGTTGTACAAATGGGAGGTATAATTCACAACCACTACTCCCCAAAACATGAAACGGAGCTTGCTTGCTGCAATTGAATAAAGGATTAAATGTTACCATATTTTTGTATTGTAATGTCCAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAGTGGTCTGCTCTTGAGCTTACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAATAACTATTCAAATAATGTAACCAAAATTGACTTCAAAGTAGCAGGAAAAGTCAAAACAGGCATTTAGGTTCGTTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTTGTGATAAAATAAGGTTTTAAATGAATTTAATTAGATATCTCATATATTAAATTC

mRNA sequence

ATGTCAGATCTTGTCTCTGATCATAAATGCAAGCCAATGACCAATATTGCTGAGTTTTCTTCATCATTTGTATGTTTTACTCAGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAAGTTGTACAAATGGGAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAGGAAGACAGAATGGACATCGAAAAATATAGTGGTCTGCTCTTGAGCTTACAAATGGCCTTTGAACTTGCGTTACAAATTGCTCTTTTAAGTTTGAAAAGGAATCAGTGAATAACTATTCAAATAATGTAACCAAAATTGACTTCAAAGTAGCAGGAAAAGTCAAAACAGGCATTTAGGTTCGTTTGTAAATGTAATTAGCCTTTACTTTCACGATATCTTGTGATAAAATAAGGTTTTAAATGAATTTAATTAGATATCTCATATATTAAATTC

Coding sequence (CDS)

ATGTCAGATCTTGTCTCTGATCATAAATGCAAGCCAATGACCAATATTGCTGAGTTTTCTTCATCATTTGTATGTTTTACTCAGCTTTGGAATGATGAAGCTGAAAGAGTTCAGGTTCTAGCAGAGAAGCACAAAAGAGGTGCGGCTGCTCGGGGTGTACGAGCATTGCAGAAAAGGAAAAGAAAAGTTGTACAAATGGGAGGAAGTGGAAAGAATCAAGGACATGTTCAACTTCCAAGACAAGCCTCGAACAGTAACGGGAGTCGCAAGAGTATGCGTTCAAGGGACAAGAACAATGCTGTTCGTAGGCACCCAGCGTAG

Protein sequence

MSDLVSDHKCKPMTNIAEFSSSFVCFTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNSNGSRKSMRSRDKNNAVRRHPA

Homology

[Close]

BLAST of Carg20937 vs. NCBI nr
Match: XP_022927980.1 (zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata])

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F +LWNDEAERVQVLAEKHKRGAAARGVRALQKRKRK+VQMGGSGKNQGHVQLPRQASNS
Sbjct: 201 FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQMGGSGKNQGHVQLPRQASNS 260

Query: 86  NGSRKSMRSRDKNNAVRRHPA 107
           NGSRKSMRSRDKNNAVRRHPA
Sbjct: 261 NGSRKSMRSRDKNNAVRRHPA 281

[Close]

BLAST of Carg20937 vs. NCBI nr
Match: XP_023512636.1 (zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F +LWNDEAERVQVLAEKHKRGAAARGVRALQKRKRK+VQ+GGSGKNQGHVQLPRQA NS
Sbjct: 209 FRRLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKLVQIGGSGKNQGHVQLPRQALNS 268

Query: 86  NGSRKSMRSRDKNNAVRRHPA 107
           NGSRKSMRSRDKNNAVRRHPA
Sbjct: 269 NGSRKSMRSRDKNNAVRRHPA 289

[Close]

BLAST of Carg20937 vs. NCBI nr
Match: XP_022971662.1 (zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima])

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F +LWNDEAER+QVLAEKHKRGAAARGVRALQKRKRK++Q+GGSGKNQG  QLPRQA NS
Sbjct: 208 FRRLWNDEAERIQVLAEKHKRGAAARGVRALQKRKRKLLQIGGSGKNQGRAQLPRQALNS 267

Query: 86  NGSRKSMRSRDKNNAVRRHPA 107
           NGSRKSMRSRDKNNAVRRHPA
Sbjct: 268 NGSRKSMRSRDKNNAVRRHPA 288

[Close]

BLAST of Carg20937 vs. NCBI nr
Match: XP_008457866.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X5 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F +LWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S
Sbjct: 222 FRRLWNDEAERVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKS 281

Query: 86  NGSRKSMRSRDKNNAVRRH 105
              R+ M SRD NNAVRRH
Sbjct: 282 KEKRQRMPSRDNNNAVRRH 300

[Close]

BLAST of Carg20937 vs. NCBI nr
Match: XP_016902185.1 (PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X2 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-18
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F +LWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S
Sbjct: 258 FRRLWNDEAERVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKS 317

Query: 86  NGSRKSMRSRDKNNAVRRH 105
              R+ M SRD NNAVRRH
Sbjct: 318 KEKRQRMPSRDNNNAVRRH 336

[Close]

BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A1S3C6H5|A0A1S3C6H5_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X5 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F +LWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S
Sbjct: 222 FRRLWNDEAERVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKS 281

Query: 86  NGSRKSMRSRDKNNAVRRH 105
              R+ M SRD NNAVRRH
Sbjct: 282 KEKRQRMPSRDNNNAVRRH 300

[Close]

BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A1S4E2I3|A0A1S4E2I3_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F +LWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S
Sbjct: 258 FRRLWNDEAERVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKS 317

Query: 86  NGSRKSMRSRDKNNAVRRH 105
              R+ M SRD NNAVRRH
Sbjct: 318 KEKRQRMPSRDNNNAVRRH 336

[Close]

BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A1S4E1T6|A0A1S4E1T6_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 29  LWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNSNGS 88
           LWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S   
Sbjct: 230 LWNDEAERVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKSKEK 289

Query: 89  RKSMRSRDKNNAVRRH 105
           R+ M SRD NNAVRRH
Sbjct: 290 RQRMPSRDNNNAVRRH 305

[Close]

BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A0A0LQ19|A0A0A0LQ19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.6e-17
Identity = 51/79 (64.56%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F  LWNDEAERVQ LAEKH+RG AARG+RA+QK+KRK +Q  G  +NQGHV L RQ   S
Sbjct: 223 FRLLWNDEAERVQALAEKHRRGVAARGLRAMQKKKRKTIQTKGCAENQGHVHLARQPLKS 282

Query: 86  NGSRKSMRSRDKNNAVRRH 105
              R+ M SRD NN VRRH
Sbjct: 283 KEKRQRMPSRDNNNVVRRH 301

[Close]

BLAST of Carg20937 vs. TrEMBL
Match: tr|A0A1S4E1S9|A0A1S4E1S9_CUCME (zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497448 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.9e-17
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 26  FTQLWNDEAERVQVLAEKHKRGAAARGVRALQKRKRKVVQMGGSGKNQGHVQLPRQASNS 85
           F +LWNDEAERVQVLAEKH+RGAAAR +RA+QK+KRK++Q  G  KNQGHV L RQ   S
Sbjct: 260 FRRLWNDEAERVQVLAEKHRRGAAARDLRAMQKKKRKIIQTKGCAKNQGHVHLARQPLKS 319

Query: 86  NGSRKSMRSRDKNNAV 102
              R+ M SRD NNA+
Sbjct: 320 KEKRQRMPSRDNNNAI 335

The following BLAST results are available for this feature:

BLAST of Carg20937 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927980.1	1.5e-32	96.30	zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata]	[more]
XP_023512636.1	2.2e-31	93.83	zinc finger CCCH domain-containing protein 62 [Cucurbita pepo subsp. pepo]	[more]
XP_022971662.1	1.5e-29	88.89	zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima]	[more]
XP_008457866.1	2.1e-18	68.35	PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X5 [Cucumi...	[more]
XP_016902185.1	2.1e-18	68.35	PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X2 [Cucumi...	[more]

BLAST of Carg20937 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20937 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20937 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6H5\|A0A1S3C6H5_CUCME	1.4e-18	68.35	zinc finger CCCH domain-containing protein 62-like isoform X5 OS=Cucumis melo OX...	[more]
tr\|A0A1S4E2I3\|A0A1S4E2I3_CUCME	1.4e-18	68.35	zinc finger CCCH domain-containing protein 62-like isoform X2 OS=Cucumis melo OX...	[more]
tr\|A0A1S4E1T6\|A0A1S4E1T6_CUCME	6.9e-18	69.74	zinc finger CCCH domain-containing protein 62-like isoform X4 OS=Cucumis melo OX...	[more]
tr\|A0A0A0LQ19\|A0A0A0LQ19_CUCSA	7.6e-17	64.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292810 PE=4 SV=1	[more]
tr\|A0A1S4E1S9\|A0A1S4E1S9_CUCME	9.9e-17	65.79	zinc finger CCCH domain-containing protein 62-like isoform X1 OS=Cucumis melo OX...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20937-RA	Carg20937-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..106

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20937	Csa2G292810	Cucumber (Chinese Long) v2	carcuB1006
Carg20937	CSPI02G14720	Wild cucumber (PI 183967)	carcpiB1030
Carg20937	Cucsa.366430	Cucumber (Gy14) v1	carcgyB1111
Carg20937	CmaCh20G011310	Cucurbita maxima (Rimu)	carcmaB1374
Carg20937	CmoCh20G011650	Cucurbita moschata (Rifu)	carcmoB1331
Carg20937	Cp4.1LG16g00400	Cucurbita pepo (Zucchini)	carcpeB1378
Carg20937	CsGy2G014750	Cucumber (Gy14) v2	carcgybB0979
Carg20937	MELO3C020931.2	Melon (DHL92) v3.6.1	carmedB0977
Carg20937	CsaV3_2G017280	Cucumber (Chinese Long) v3	carcucB1036
Carg20937	Bhi10G001822	Wax gourd	carwgoB1163

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20937	Cucurbita maxima (Rimu)	carcmaB1371
Carg20937	Bottle gourd (USVL1VR-Ls)	carlsiB906
Carg20937	Melon (DHL92) v3.5.1	carmeB0967
Carg20937	Watermelon (Charleston Gray)	carwcgB0967
Carg20937	Watermelon (97103) v1	carwmB0993
Carg20937	Watermelon (97103) v2	carwmbB1045
Carg20937	Watermelon (97103) v2	carwmbB1047
Carg20937	Wax gourd	carwgoB1162