Carg20899 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTTGGAAAATTTCTGGGAACTCGATTCTCTTGTATCATGTGAGTTCTGTTAACTTCACTTACCTTCCCCCTCCCCCTCACCTGTTCTCTTTTGACCCTTTACTTTATGGCAGGGGTGGGTTGAGAGTGTCTTGCTTCTATTATGAACTCTAACCATGTGAAACGCGATTAGTTAACCAGTATTTAATATGATTCCAGCTGCTGTTGATTTTGATTTAGACCTGTTGGGTTGGGAGTTTCTTTTGATTGGGTCTGAACGACCATTTCATCTCGTAGTCCTATAAGCCCCCCTGTTTTTATCGAAATTATGATTCATGTTATTTTTGTCCATATTGATATTTTAATTGGTAGGAATCAGCTTGACAACTGAACAATGGTCTGCCTTTAGGAGTAATATTCCTGCTATAGAGGAAGCTATTTTGCAGATGAAAAGGAAAATAAAAAGGTGAGAACCATGTTGATGTTCTTTGATACTACTGTATTGAGCCTGCTAGTTATAGTTCATCAAATTTATTTCATTAACAAGAAAACTCCAAAGTTTTATGCTATGTTTTCAGGCGTTGGTGTCCAAATGTAGATTCCAAATTTTTATTAATGTTTTCATTCTTCAAGTTGTCTTGTTGGAGGATTTAAATTTGAGGACAAAAGGTGTATAGTTGAAATAACTGACCATACCATATCTTGTAGATCTGAACACGATGCTAATACAAGTGGTGCTGTCTCCGTACCTGCTACTGGGTCTGCTCCTAAATTTCCATCTGAAACTATTCGGTTTGATGGAAAAAACTACCGGGTTTGGGCACACCAGATGGAGTTTTTGCTGCGGCGCTTAAAGATTGCTTATGTACTTTCTGATCATCGTCCTACTTCCATGCTTGGACCGGAATCTAGCTCTGGAAATACCTCTCGATCCAAGGCGTCTGAACAGGAATGGATGAGTGATGACCACATGTGTCGCCACATCATTCTGAACTCCCTCTCCGATAGTCTTTTTCATAAATACACGAAGAGAACAATGAGTGCCAGAGAACTCTGGAAGGAGCTAAACTCACTTTATCTTTGTGATTATGGAACCAGAAGATCTCAAGTTAAAAAATATCTGGAATTCAGGATGGTCGAGGAGAAGTCAATATTAGAACAAGTTGAAGAACTTAATAACATTGCTGAATCCATTATTTCAGCTGGAATGCGGATTGATGAGGATTTTCATGTTAGCGCCATTATTTCGAAGCTTCCACCCTCTTGGACAAATGTCTTTGTGAAGTTAATGCGTGAGGAGCATCTTCCCTCTGTGGTGTTGATAGATCGATTGAGGAATGAAGAAAAACTACGTACACAGCAAAACTCACATCGCTCAGGAGGCGAACGTCCTTTCATGAATCACAGGCGAAAAATGGGAGACCAAATGTCCCAAAGCCTACCGTCGAGGAAAAGGGAATGGAAAATGGATGTCAAAACTTTACTCTGCTTGAATTGTGGCAAGGAAGGACACATATCTCGAGATTGTCCGAGTAGTAAGTAGGAAAGTCGATAATGAAGTAGCTCATTAAAGAACACAGCCGTATCCTACTGAGGTAAGTATGTCTGAGGATAAAAATAGTGTATTCACATTTAGATCCCACCCCTCTTGACTCATATGTTCTTTTAAAGCATGGAATACGATAGTTTGAAATTTCTAACAATTTTCATTTCTCAGAATCTGTCAAGCGCTTAGGGGGCTTTCAAAGTGCGAAATCAAGGTTCTAAGCGATGTAAGTGCATAACTAGCTTATAATGTTGT ATGTGTTGGAAAATTTCTGGGAACTCGATTCTCTTGTATCATGTGAGTTCTGTTAACTTCACTTACCTTCCCCCTCCCCCTCACCTGTTCTCTTTTGACCCTTTACTTTATGGCAGGGGAATCAGCTTGACAACTGAACAATGGTCTGCCTTTAGGAGTAATATTCCTGCTATAGAGGAAGCTATTTTGCAGATGAAAAGGAAAATAAAAAGATCTGAACACGATGCTAATACAAGTGGTGCTGTCTCCGTACCTGCTACTGGGTCTGCTCCTAAATTTCCATCTGAAACTATTCGGTTTGATGGAAAAAACTACCGGGTTTGGGCACACCAGATGGAGTTTTTGCTGCGGCGCTTAAAGATTGCTTATGTACTTTCTGATCATCGTCCTACTTCCATGCTTGGACCGGAATCTAGCTCTGGAAATACCTCTCGATCCAAGGCGTCTGAACAGGAATGGATGAGTGATGACCACATGTGTCGCCACATCATTCTGAACTCCCTCTCCGATAGTCTTTTTCATAAATACACGAAGAGAACAATGAGTGCCAGAGAACTCTGGAAGGAGCTAAACTCACTTTATCTTTGTGATTATGGAACCAGAAGATCTCAAGTTAAAAAATATCTGGAATTCAGGATGGTCGAGGAGAAGTCAATATTAGAACAAGTTGAAGAACTTAATAACATTGCTGAATCCATTATTTCAGCTGGAATGCGGATTGATGAGGATTTTCATGTTAGCGCCATTATTTCGAAGCTTCCACCCTCTTGGACAAATGTCTTTGTGAAGTTAATGCGTGAGGAGCATCTTCCCTCTGTGGTGTTGATAGATCGATTGAGGAATGAAGAAAAACTACGTACACAGCAAAACTCACATCGCTCAGGAGGCGAACGTCCTTTCATGAATCACAGGCGAAAAATGGGAGACCAAATGTCCCAAAGCCTACCGTCGAGGAAAAGGGAATGGAAAATGGATGTCAAAACTTTACTCTGCTTGAATTGTGGCAAGGAAGGACACATATCTCGAGATTGTCCGAGTAGTAAAATCTGTCAAGCGCTTAGGGGGCTTTCAAAGTGCGAAATCAAGGTTCTAAGCGATGTAAGTGCATAACTAGCTTATAATGTTGT ATGTGTTGGAAAATTTCTGGGAACTCGATTCTCTTGTATCATGTGAGTTCTGTTAACTTCACTTACCTTCCCCCTCCCCCTCACCTGTTCTCTTTTGACCCTTTACTTTATGGCAGGGGAATCAGCTTGACAACTGAACAATGGTCTGCCTTTAGGAGTAATATTCCTGCTATAGAGGAAGCTATTTTGCAGATGAAAAGGAAAATAAAAAGATCTGAACACGATGCTAATACAAGTGGTGCTGTCTCCGTACCTGCTACTGGGTCTGCTCCTAAATTTCCATCTGAAACTATTCGGTTTGATGGAAAAAACTACCGGGTTTGGGCACACCAGATGGAGTTTTTGCTGCGGCGCTTAAAGATTGCTTATGTACTTTCTGATCATCGTCCTACTTCCATGCTTGGACCGGAATCTAGCTCTGGAAATACCTCTCGATCCAAGGCGTCTGAACAGGAATGGATGAGTGATGACCACATGTGTCGCCACATCATTCTGAACTCCCTCTCCGATAGTCTTTTTCATAAATACACGAAGAGAACAATGAGTGCCAGAGAACTCTGGAAGGAGCTAAACTCACTTTATCTTTGTGATTATGGAACCAGAAGATCTCAAGTTAAAAAATATCTGGAATTCAGGATGGTCGAGGAGAAGTCAATATTAGAACAAGTTGAAGAACTTAATAACATTGCTGAATCCATTATTTCAGCTGGAATGCGGATTGATGAGGATTTTCATGTTAGCGCCATTATTTCGAAGCTTCCACCCTCTTGGACAAATGTCTTTGTGAAGTTAATGCGTGAGGAGCATCTTCCCTCTGTGGTGTTGATAGATCGATTGAGGAATGAAGAAAAACTACGTACACAGCAAAACTCACATCGCTCAGGAGGCGAACGTCCTTTCATGAATCACAGGCGAAAAATGGGAGACCAAATGTCCCAAAGCCTACCGTCGAGGAAAAGGGAATGGAAAATGGATGTCAAAACTTTACTCTGCTTGAATTGTGGCAAGGAAGGACACATATCTCGAGATTGTCCGAGTAGTAAAATCTGTCAAGCGCTTAGGGGGCTTTCAAAGTGCGAAATCAAGGTTCTAAGCGATGTAAGTGCATAA MCWKISGNSILLYHVSSVNFTYLPPPPHLFSFDPLLYGRGISLTTEQWSAFRSNIPAIEEAILQMKRKIKRSEHDANTSGAVSVPATGSAPKFPSETIRFDGKNYRVWAHQMEFLLRRLKIAYVLSDHRPTSMLGPESSSGNTSRSKASEQEWMSDDHMCRHIILNSLSDSLFHKYTKRTMSARELWKELNSLYLCDYGTRRSQVKKYLEFRMVEEKSILEQVEELNNIAESIISAGMRIDEDFHVSAIISKLPPSWTNVFVKLMREEHLPSVVLIDRLRNEEKLRTQQNSHRSGGERPFMNHRRKMGDQMSQSLPSRKREWKMDVKTLLCLNCGKEGHISRDCPSSKICQALRGLSKCEIKVLSDVSA
BLAST of Carg20899 vs. NCBI nr
Match: XP_022945450.1 (uncharacterized protein LOC111449676 [Cucurbita moschata]) HSP 1 Score: 612.5 bits (1578), Expect = 9.7e-172 Identity = 307/310 (99.03%), Postives = 308/310 (99.35%), Query Frame = 0
BLAST of Carg20899 vs. NCBI nr
Match: XP_023539029.1 (uncharacterized protein LOC111799782 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 606.7 bits (1563), Expect = 5.3e-170 Identity = 303/309 (98.06%), Postives = 307/309 (99.35%), Query Frame = 0
BLAST of Carg20899 vs. NCBI nr
Match: XP_004134299.1 (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus] >KGN56418.1 hypothetical protein Csa_3G119510 [Cucumis sativus]) HSP 1 Score: 397.9 bits (1021), Expect = 3.8e-107 Identity = 212/321 (66.04%), Postives = 252/321 (78.50%), Query Frame = 0
BLAST of Carg20899 vs. NCBI nr
Match: XP_008437880.1 (PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo]) HSP 1 Score: 396.0 bits (1016), Expect = 1.4e-106 Identity = 210/320 (65.62%), Postives = 250/320 (78.12%), Query Frame = 0
BLAST of Carg20899 vs. NCBI nr
Match: XP_021280140.1 (uncharacterized protein LOC110413599 [Herrania umbratica]) HSP 1 Score: 291.6 bits (745), Expect = 3.8e-75 Identity = 152/335 (45.37%), Postives = 236/335 (70.45%), Query Frame = 0
BLAST of Carg20899 vs. TAIR10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein) HSP 1 Score: 235.3 bits (599), Expect = 5.9e-62 Identity = 141/342 (41.23%), Postives = 212/342 (61.99%), Query Frame = 0
BLAST of Carg20899 vs. TAIR10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP)) HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04 Identity = 17/31 (54.84%), Postives = 25/31 (80.65%), Query Frame = 0
BLAST of Carg20899 vs. Swiss-Prot
Match: sp|P04146|COPIA_DROME (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09 Identity = 56/254 (22.05%), Postives = 116/254 (45.67%), Query Frame = 0
BLAST of Carg20899 vs. TrEMBL
Match: tr|A0A0A0L3U5|A0A0A0L3U5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119510 PE=4 SV=1) HSP 1 Score: 397.9 bits (1021), Expect = 2.5e-107 Identity = 212/321 (66.04%), Postives = 252/321 (78.50%), Query Frame = 0
BLAST of Carg20899 vs. TrEMBL
Match: tr|A0A1S3AV18|A0A1S3AV18_CUCME (uncharacterized protein LOC103483179 OS=Cucumis melo OX=3656 GN=LOC103483179 PE=4 SV=1) HSP 1 Score: 396.0 bits (1016), Expect = 9.4e-107 Identity = 210/320 (65.62%), Postives = 250/320 (78.12%), Query Frame = 0
BLAST of Carg20899 vs. TrEMBL
Match: tr|A0A061DUH2|A0A061DUH2_THECC (Zinc knuckle family protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_005132 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 2.1e-74 Identity = 152/335 (45.37%), Postives = 234/335 (69.85%), Query Frame = 0
BLAST of Carg20899 vs. TrEMBL
Match: tr|A0A061DTK4|A0A061DTK4_THECC (Zinc knuckle family protein, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_005132 PE=4 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 2.1e-74 Identity = 152/335 (45.37%), Postives = 234/335 (69.85%), Query Frame = 0
BLAST of Carg20899 vs. TrEMBL
Match: tr|V4TCL7|V4TCL7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10020119mg PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 6.2e-74 Identity = 148/322 (45.96%), Postives = 226/322 (70.19%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|