Carg20607 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20607
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S acidic ribosomal protein P0
Location	Cucurbita_argyrosperma_scaffold_100 : 93906 .. 95884 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTCAAGCCCACCAGAGCTCAAAAGAAGACGCAGTACGACAAGAAACTCTGCCGCCTCCTGGAAGAGTACTCACATGTCCTCATCGTCGGCGCCGACAATGTTGGCTCCAATCAGCTTCAGAGTATTCGCAAGGGTCTTCGAGGCGATTCCATTATCCTCATGGGTAAGAACACTATGATGAAACGCTCCATCAGAATCCATTCTGAAAAGACTGGTAATTCCGCCGTCATGAACCTCCTCCCCCAACTTGTGGTACGGATTCCAATCTCTCTAACTCGATTTTGATTTTGATTTTGATTTTGATTTTGTCTCTTGTTGATTTCAACGAGCTTTCTTCGATCGATGTTTAGGGAAACGTGGGTTTGATCTTCACTAAAGGCGATTTGAAGGAAGTGAAGGAAGAGGTCGCCAAGTACAAGGTATTGTGTTTGGATTTTATTTTATTTCATTTCCACTTTCTGCTCTGTGCTGTGATTTCCATGCCGGCTTTTAACCATACATTGCCTAATGCTAGATTTGTAGTTTCCTTAAAAGTTATGTGCCCTATTCTGAGCTATTATTGTTCTCATAGAGAGTCATCGATATAAATAGAATGTATTGGTAATTAGTTCGCGATGGTAGCTTTATAATGGATTTTTTATAGAACTGAATTGATCATTGAGAAATGCAGAAGACTTGAATGAAACTGTATAATAGTGTAATGAAATTGCATAGCCCATCCGTTGTGAAGGTCTAATGAAATTGTATATCAAATGTAATATGCCTTCAGTCCACTGTTCTCCAAAGTTTGGTTGTGTTGGAATGTTTGCAAGCAGTTTGTTCTATCAAATTTGTTCTTTAGAGCCCCAATGTGGCGGCAACCTTGAATAATTTCTCCGCGTAATTGCCATATTTGTACAAGTTTTATATATGGTATGCATTTATGGAAACAGGTGGGAGCCCCAGCCCGTGTTGGCCTTATTGCACCGATTGACGTGATTGTTCCTCCAGGAAACACTGGACTCGATCCTTCCCAGACATCTTTCTTTCAGGTTTCTTATGTGAACTAGTTACCTCCAATTTTAAACCGTTCAATTTGGAAAAGGGTCTCAACTTAAGAGTTGAATGATCTCAGGTGCTGAACATCCCAACAAAGATTAACAAAGGCACAGTGGAAATCATCACTCCTGTGGAGCTAATCAAGAAAGGAGACAAAGTTGGTTCATCCGAGGCTGCGCTCCTCTCTAAGCTTGGGATTAGGCCCTTCTCTTACGGTCTAATTGTTGTCTCTGTCTATGACAACGGCTCTGTTTTCGACCCAGAGGTGCTTGATCTTACAGAGGAAGATCTTCTTGAGAAATTCCTTTCTGGGGTTTCCATGGTTGCCTCTTTGTCTCTCGCTGTGTCTTTCCCAACTCTTGCAGCTGCTCCCCACATGCTCATCAATGCATATAAGAATCTTCTCGCTGTTGCTGTCGCCACTGAATATTCGTTCCCACAAGCTGATGAAGTCAAAGAATTCTTGAAGGTTCGTAAGCCTTCAGCTTTCTTAAACTCCTTAATATATCAAATACGTAAATGCTTAGATATAGTTCTATTTAGATTCAGTTTTGGGTTGATAAAGTTTTATTTTGATCTTTTTAATTTCTTTTTATATTAGACCTTATAAGTTCCTACTAACCTTTTCAAATGACATTTTTAGTGGGATCCTGGGATCCACTTACCTTAGGCATTTTAGCAGGATTCCTTTATTCATTAGATGCAGTAGAAATGAACTAGAAATAAAGCATATTGAAAACAAAATGGTATATGACTTATTTGGTATGGTGGTGGAAAAATGGTAGGATCCAAGCAAGTTTGCAGCTGCAGCAGCTCCTGCTGCAGGCGACGAGTCTGGAGGCGCCTCAGCAGCTGCTGCCCCCGCTGAGGAAGAAAAGGCGGCAGAACCAGAGGAGGAGTCCGACGGGGATATGATCATGGGCCTGTTTGATTGA

mRNA sequence

ATGGTTGTCAAGCCCACCAGAGCTCAAAAGAAGACGCAGTACGACAAGAAACTCTGCCGCCTCCTGGAAGAGTACTCACATGTCCTCATCGTCGGCGCCGACAATGTTGGCTCCAATCAGCTTCAGAGTATTCGCAAGGGTCTTCGAGGCGATTCCATTATCCTCATGGGTAAGAACACTATGATGAAACGCTCCATCAGAATCCATTCTGAAAAGACTGGTAATTCCGCCGTCATGAACCTCCTCCCCCAACTTGTGGGAAACGTGGGTTTGATCTTCACTAAAGGCGATTTGAAGGAAGTGAAGGAAGAGGTCGCCAAGTACAAGGTGGGAGCCCCAGCCCGTGTTGGCCTTATTGCACCGATTGACGTGATTGTTCCTCCAGGAAACACTGGACTCGATCCTTCCCAGACATCTTTCTTTCAGGTGCTGAACATCCCAACAAAGATTAACAAAGGCACAGTGGAAATCATCACTCCTGTGGAGCTAATCAAGAAAGGAGACAAAGTTGGTTCATCCGAGGCTGCGCTCCTCTCTAAGCTTGGGATTAGGCCCTTCTCTTACGGTCTAATTGTTGTCTCTGTCTATGACAACGGCTCTGTTTTCGACCCAGAGGTGCTTGATCTTACAGAGGAAGATCTTCTTGAGAAATTCCTTTCTGGGGTTTCCATGGTTGCCTCTTTGTCTCTCGCTGTGTCTTTCCCAACTCTTGCAGCTGCTCCCCACATGCTCATCAATGCATATAAGAATCTTCTCGCTGTTGCTGTCGCCACTGAATATTCGTTCCCACAAGCTGATGAAGTCAAAGAATTCTTGAAGGATCCAAGCAAGTTTGCAGCTGCAGCAGCTCCTGCTGCAGGCGACGAGTCTGGAGGCGCCTCAGCAGCTGCTGCCCCCGCTGAGGAAGAAAAGGCGGCAGAACCAGAGGAGGAGTCCGACGGGGATATGATCATGGGCCTGTTTGATTGA

Coding sequence (CDS)

ATGGTTGTCAAGCCCACCAGAGCTCAAAAGAAGACGCAGTACGACAAGAAACTCTGCCGCCTCCTGGAAGAGTACTCACATGTCCTCATCGTCGGCGCCGACAATGTTGGCTCCAATCAGCTTCAGAGTATTCGCAAGGGTCTTCGAGGCGATTCCATTATCCTCATGGGTAAGAACACTATGATGAAACGCTCCATCAGAATCCATTCTGAAAAGACTGGTAATTCCGCCGTCATGAACCTCCTCCCCCAACTTGTGGGAAACGTGGGTTTGATCTTCACTAAAGGCGATTTGAAGGAAGTGAAGGAAGAGGTCGCCAAGTACAAGGTGGGAGCCCCAGCCCGTGTTGGCCTTATTGCACCGATTGACGTGATTGTTCCTCCAGGAAACACTGGACTCGATCCTTCCCAGACATCTTTCTTTCAGGTGCTGAACATCCCAACAAAGATTAACAAAGGCACAGTGGAAATCATCACTCCTGTGGAGCTAATCAAGAAAGGAGACAAAGTTGGTTCATCCGAGGCTGCGCTCCTCTCTAAGCTTGGGATTAGGCCCTTCTCTTACGGTCTAATTGTTGTCTCTGTCTATGACAACGGCTCTGTTTTCGACCCAGAGGTGCTTGATCTTACAGAGGAAGATCTTCTTGAGAAATTCCTTTCTGGGGTTTCCATGGTTGCCTCTTTGTCTCTCGCTGTGTCTTTCCCAACTCTTGCAGCTGCTCCCCACATGCTCATCAATGCATATAAGAATCTTCTCGCTGTTGCTGTCGCCACTGAATATTCGTTCCCACAAGCTGATGAAGTCAAAGAATTCTTGAAGGATCCAAGCAAGTTTGCAGCTGCAGCAGCTCCTGCTGCAGGCGACGAGTCTGGAGGCGCCTCAGCAGCTGCTGCCCCCGCTGAGGAAGAAAAGGCGGCAGAACCAGAGGAGGAGTCCGACGGGGATATGATCATGGGCCTGTTTGATTGA

Protein sequence

MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIAPIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAPHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAAAAAPAAGDESGGASAAAAPAEEEKAAEPEEESDGDMIMGLFD

Homology

[Close]

BLAST of Carg20607 vs. NCBI nr
Match: XP_022964942.1 (60S acidic ribosomal protein P0-like [Cucurbita moschata] >XP_023520060.1 60S acidic ribosomal protein P0-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 539.3 bits (1388), Expect = 9.1e-150
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT
Sbjct: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA
Sbjct: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA
Sbjct: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAXXXXXXXXXXXXXXXXXXXXX 300
           PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXGDMIMGLFD 323
           XXXXXXXXXXXXXGDMIMGLFD
Sbjct: 301 XXXXXXXXXXXXXGDMIMGLFD 322

[Close]

BLAST of Carg20607 vs. NCBI nr
Match: XP_022970458.1 (60S acidic ribosomal protein P0-like [Cucurbita maxima])

HSP 1 Score: 536.2 bits (1380), Expect = 7.7e-149
Identity = 320/322 (99.38%), Postives = 321/322 (99.69%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           MV+KPTRAQKKTQYD KLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT
Sbjct: 1   MVLKPTRAQKKTQYDNKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA
Sbjct: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA
Sbjct: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAXXXXXXXXXXXXXXXXXXXXX 300
           PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAXXXXXXXXXXXXXXXXXXXXX
Sbjct: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAXXXXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXGDMIMGLFD 323
           XXXXXXXXXXXXXGDMIMGLFD
Sbjct: 301 XXXXXXXXXXXXXGDMIMGLFD 322

[Close]

BLAST of Carg20607 vs. NCBI nr
Match: XP_008457380.1 (PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo] >XP_016902088.1 PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo])

HSP 1 Score: 506.5 bits (1303), Expect = 6.5e-140
Identity = 262/279 (93.91%), Postives = 271/279 (97.13%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT
Sbjct: 1   MVLKPTRAQKKTNYDQKLCRLLDEYSQVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRSIRIHSEKTGN+AV NLLP LVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSIRIHSEKTGNTAVTNLLPHLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGLIVVSVYDNGSVF P VLDLTEEDLLEKFL+GVSMVASLSLAVSFPTLAAA
Sbjct: 181 LGIRPFSYGLIVVSVYDNGSVFSPAVLDLTEEDLLEKFLAGVSMVASLSLAVSFPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHMLINAYKN LA+AVATEYSF +ADE+KEFLKDPSKFA
Sbjct: 241 PHMLINAYKNALAIAVATEYSFSEADEIKEFLKDPSKFA 279

[Close]

BLAST of Carg20607 vs. NCBI nr
Match: XP_004145258.1 (PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis sativus] >KGN65800.1 hypothetical protein Csa_1G530120 [Cucumis sativus])

HSP 1 Score: 504.2 bits (1297), Expect = 3.2e-139
Identity = 301/322 (93.48%), Postives = 311/322 (96.58%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT
Sbjct: 1   MVLKPTRAQKKTNYDQKLCRLLDEYSQVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRSIRIHSE TGN+AV NLLP LVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSIRIHSENTGNTAVTNLLPHLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGLIVVSVYDNGSVF P VLDL+EEDLLEKFL+GVSMVASLSLAVSFPTLAAA
Sbjct: 181 LGIRPFSYGLIVVSVYDNGSVFSPAVLDLSEEDLLEKFLAGVSMVASLSLAVSFPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAXXXXXXXXXXXXXXXXXXXXX 300
           PHMLINAYKN LA+AVATEYSF +ADE+KEFLKDPSKFA  XXXXXXXXXXXXXXXXXXX
Sbjct: 241 PHMLINAYKNALAIAVATEYSFSEADEIKEFLKDPSKFA--XXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXGDMIMGLFD 323
           XXXXXXXXXXXXXGDMIMGLFD
Sbjct: 301 XXXXXXXXXXXXXGDMIMGLFD 320

[Close]

BLAST of Carg20607 vs. NCBI nr
Match: XP_022150896.1 (60S acidic ribosomal protein P0-like [Momordica charantia])

HSP 1 Score: 501.9 bits (1291), Expect = 1.6e-138
Identity = 257/279 (92.11%), Postives = 274/279 (98.21%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           MV+KPTRAQKK+QYD+KLCRLL EYS VLIVGADNVGSNQLQ+IR+GLRGDSI+LMGKNT
Sbjct: 1   MVLKPTRAQKKSQYDQKLCRLLGEYSQVLIVGADNVGSNQLQNIRQGLRGDSIVLMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRSIRIHSEKTGN+AVM+L+P LVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSIRIHSEKTGNTAVMSLVPHLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGL+V+SVYDNGSVF PEVLDLTE+DLLEKFL+GVSMVAS+SLA+SFPTLAAA
Sbjct: 181 LGIRPFSYGLLVLSVYDNGSVFSPEVLDLTEDDLLEKFLTGVSMVASVSLALSFPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHMLINAYKN LAVAVATEYSFPQA+EVKEFLKDPSKFA
Sbjct: 241 PHMLINAYKNALAVAVATEYSFPQAEEVKEFLKDPSKFA 279

[Close]

BLAST of Carg20607 vs. TAIR10
Match: AT3G09200.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 459.9 bits (1182), Expect = 1.3e-129
Identity = 228/278 (82.01%), Postives = 259/278 (93.17%), Query Frame = 0


Query: 2   VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTM 61
           +VK T+A+KK  YD KLC+L++EY+ +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIAP 121
           MKRS+RIHSE TGN+A++NLLP L GNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+AP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKL 181
           IDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALL+KL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAP 241
           GIRPFSYGL+V SVYDNGSVF PEVLDLTE+ L+EKF SG+SMV SL+LAVS+PTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           HM INAYKN LA+AVATEY+FPQA++VKE+LKDPSKFA
Sbjct: 241 HMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFA 278

[Close]

BLAST of Carg20607 vs. TAIR10
Match: AT2G40010.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 458.0 bits (1177), Expect = 4.8e-129
Identity = 227/279 (81.36%), Postives = 259/279 (92.83%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           M VK T+A+KK  YD KLC+LL EYS +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNT
Sbjct: 1   MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRS+RIH++KTGN A ++LLP L GNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALL+K
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGL+V SVYDNGSVF+PEVL+LTE+DL+EKF +GVSM+ +LSLA+S+PT+AAA
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHM +NAYKN+LAVA+ATEYSFPQA+ VKEFLKDP+KFA
Sbjct: 241 PHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFA 279

[Close]

BLAST of Carg20607 vs. TAIR10
Match: AT3G11250.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 456.8 bits (1174), Expect = 1.1e-128
Identity = 226/277 (81.59%), Postives = 258/277 (93.14%), Query Frame = 0


Query: 2   VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTM 61
           +VK T+A+KK  YD KLC+L++EY+ +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIAP 121
           MKRS+RIHSE +GN+A++NLLP L GNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+AP
Sbjct: 61  MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKL 181
           IDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALL+KL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAP 241
           GIRPFSYGL+V SVYDNGSVF PEVLDLTE+ L+EKF SG+SMV SL+LAVS+PTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKF 279
           HM INAYKN LA+AVAT+Y+FPQA++VKEFLKDPSKF
Sbjct: 241 HMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277

[Close]

BLAST of Carg20607 vs. TAIR10
Match: AT1G25260.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 55.5 bits (132), Expect = 7.2e-08
Identity = 44/194 (22.68%), Postives = 89/194 (45.88%), Query Frame = 0


Query: 22  LEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNL 81
           +E+YS V +   +N+ + + +  R+  R +    +G N +M+ ++   +E    S +  +
Sbjct: 34  VEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSGIYKV 93

Query: 82  LPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIAPIDVIVPPGN-TGLDPSQTSF 141
              L G+ GL+ T    +EV+     Y+    +R G IA   V +  G            
Sbjct: 94  SKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPL 153

Query: 142 FQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGIRPFSYGLIVVSVYDNGS 201
            + L +P ++NKGTVE++    + ++G ++    A +L  L ++  ++ L ++  +    
Sbjct: 154 LRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCRW---- 213

Query: 202 VFDPEVLDLTEEDL 215
              P   +L  EDL
Sbjct: 214 --SPSDFELYREDL 221

[Close]

BLAST of Carg20607 vs. Swiss-Prot
Match: sp|P50346|RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 2.1e-129
Identity = 228/279 (81.72%), Postives = 260/279 (93.19%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           M  K T+A+KK  YD KLC L+EEY  +L+V +DNVGSNQLQ+IRKGLRGDS++LMGKNT
Sbjct: 1   MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRS+R+H+EKTGN+A +NL+P LVGNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALL+K
Sbjct: 121 PIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGL+V+SVYDNGSVF PEVLDLTE+DL+ KF +GVSMV SLSLA+S+PTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHM +NAYKN+LAVAV T+YSFP+AD+VKE+LKDPSKFA
Sbjct: 241 PHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFA 279

[Close]

BLAST of Carg20607 vs. Swiss-Prot
Match: sp|Q42112|RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana OX=3702 GN=RPP0B PE=1 SV=2)

HSP 1 Score: 459.9 bits (1182), Expect = 2.3e-128
Identity = 228/278 (82.01%), Postives = 259/278 (93.17%), Query Frame = 0


Query: 2   VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTM 61
           +VK T+A+KK  YD KLC+L++EY+ +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIAP 121
           MKRS+RIHSE TGN+A++NLLP L GNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+AP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKL 181
           IDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALL+KL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAP 241
           GIRPFSYGL+V SVYDNGSVF PEVLDLTE+ L+EKF SG+SMV SL+LAVS+PTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           HM INAYKN LA+AVATEY+FPQA++VKE+LKDPSKFA
Sbjct: 241 HMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFA 278

[Close]

BLAST of Carg20607 vs. Swiss-Prot
Match: sp|O04204|RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana OX=3702 GN=RPP0A PE=1 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 8.7e-128
Identity = 227/279 (81.36%), Postives = 259/279 (92.83%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           M VK T+A+KK  YD KLC+LL EYS +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNT
Sbjct: 1   MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRS+RIH++KTGN A ++LLP L GNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALL+K
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGL+V SVYDNGSVF+PEVL+LTE+DL+EKF +GVSM+ +LSLA+S+PT+AAA
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHM +NAYKN+LAVA+ATEYSFPQA+ VKEFLKDP+KFA
Sbjct: 241 PHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFA 279

[Close]

BLAST of Carg20607 vs. Swiss-Prot
Match: sp|P57691|RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana OX=3702 GN=RPP0C PE=1 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 1.9e-127
Identity = 226/277 (81.59%), Postives = 258/277 (93.14%), Query Frame = 0


Query: 2   VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTM 61
           +VK T+A+KK  YD KLC+L++EY+ +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 62  MKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIAP 121
           MKRS+RIHSE +GN+A++NLLP L GNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+AP
Sbjct: 61  MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 122 IDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKL 181
           IDV+V PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALL+KL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180

Query: 182 GIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAP 241
           GIRPFSYGL+V SVYDNGSVF PEVLDLTE+ L+EKF SG+SMV SL+LAVS+PTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240

Query: 242 HMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKF 279
           HM INAYKN LA+AVAT+Y+FPQA++VKEFLKDPSKF
Sbjct: 241 HMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277

[Close]

BLAST of Carg20607 vs. Swiss-Prot
Match: sp|P41095|RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-125
Identity = 219/279 (78.49%), Postives = 257/279 (92.11%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           M +K T+A+KK  YDKKLC+LL+EY+ VLI  ADNVGSNQLQ IRKGLRGDSI+LMGKNT
Sbjct: 1   MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           +++R I++H++ TGN   + L+P LVGNVGLIFTKGDLKEV+EEVAKYKVGAPARVGL+A
Sbjct: 61  LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           P+DV+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSE+ALL+K
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGL++ +VYD+GSVF PEVLDLTE+DL+EKF SGVSMVAS+SLA+S+PT+AAA
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHM +N YKN+LAVAV TEYS+P AD++KE+LKDPSKFA
Sbjct: 241 PHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFA 279

[Close]

BLAST of Carg20607 vs. TrEMBL
Match: tr|A0A1S3C6N6|A0A1S3C6N6_CUCME (60S acidic ribosomal protein P0 OS=Cucumis melo OX=3656 GN=LOC103497088 PE=3 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 4.3e-140
Identity = 262/279 (93.91%), Postives = 271/279 (97.13%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT
Sbjct: 1   MVLKPTRAQKKTNYDQKLCRLLDEYSQVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRSIRIHSEKTGN+AV NLLP LVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSIRIHSEKTGNTAVTNLLPHLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGLIVVSVYDNGSVF P VLDLTEEDLLEKFL+GVSMVASLSLAVSFPTLAAA
Sbjct: 181 LGIRPFSYGLIVVSVYDNGSVFSPAVLDLTEEDLLEKFLAGVSMVASLSLAVSFPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHMLINAYKN LA+AVATEYSF +ADE+KEFLKDPSKFA
Sbjct: 241 PHMLINAYKNALAIAVATEYSFSEADEIKEFLKDPSKFA 279

[Close]

BLAST of Carg20607 vs. TrEMBL
Match: tr|A0A0A0LV50|A0A0A0LV50_CUCSA (60S acidic ribosomal protein P0 OS=Cucumis sativus OX=3659 GN=Csa_1G530120 PE=3 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 2.1e-139
Identity = 301/322 (93.48%), Postives = 311/322 (96.58%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT
Sbjct: 1   MVLKPTRAQKKTNYDQKLCRLLDEYSQVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRSIRIHSE TGN+AV NLLP LVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSIRIHSENTGNTAVTNLLPHLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGLIVVSVYDNGSVF P VLDL+EEDLLEKFL+GVSMVASLSLAVSFPTLAAA
Sbjct: 181 LGIRPFSYGLIVVSVYDNGSVFSPAVLDLSEEDLLEKFLAGVSMVASLSLAVSFPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFAXXXXXXXXXXXXXXXXXXXXX 300
           PHMLINAYKN LA+AVATEYSF +ADE+KEFLKDPSKFA  XXXXXXXXXXXXXXXXXXX
Sbjct: 241 PHMLINAYKNALAIAVATEYSFSEADEIKEFLKDPSKFA--XXXXXXXXXXXXXXXXXXX 300

Query: 301 XXXXXXXXXXXXXGDMIMGLFD 323
           XXXXXXXXXXXXXGDMIMGLFD
Sbjct: 301 XXXXXXXXXXXXXGDMIMGLFD 320

[Close]

BLAST of Carg20607 vs. TrEMBL
Match: tr|F6HC03|F6HC03_VITVI (60S acidic ribosomal protein P0 OS=Vitis vinifera OX=29760 GN=VIT_13s0067g00270 PE=3 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 3.3e-132
Identity = 240/279 (86.02%), Postives = 265/279 (94.98%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           M VKP++A KK  YD+KLC+LL+EYS +LI  ADNVGSNQLQ+IRKGLRGDS++LMGKNT
Sbjct: 1   MAVKPSKADKKIAYDQKLCQLLDEYSQILIAAADNVGSNQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRSIR+H+EKTGN+A +NL+P LVGNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSIRLHAEKTGNTAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALL+K
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGL+V+SVYDNGSVF PEVLDLTEEDL+EKF +GVSMV SLSLA+S+PTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLIEKFAAGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHM INAYKN+LAVAVATEYSFPQAD+VKE+LKDPSKFA
Sbjct: 241 PHMFINAYKNVLAVAVATEYSFPQADKVKEYLKDPSKFA 279

[Close]

BLAST of Carg20607 vs. TrEMBL
Match: tr|A0A0A0KM27|A0A0A0KM27_CUCSA (60S acidic ribosomal protein P0 OS=Cucumis sativus OX=3659 GN=Csa_5G199310 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 5.7e-132
Identity = 241/279 (86.38%), Postives = 264/279 (94.62%), Query Frame = 0


Query: 1   MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNT 60
           M +KPT+A+KK  YD KLC+LL+EYS VL+V ADNVGSNQLQ+IRKGLRGDSI+LMGKNT
Sbjct: 1   MAIKPTKAEKKVAYDSKLCQLLDEYSQVLVVAADNVGSNQLQNIRKGLRGDSIVLMGKNT 60

Query: 61  MMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIA 120
           MMKRS+RIHSE+TGN A +NLLP LVGNVGLIFTKGDLKEV EEVAKYKVGAPARVGL+A
Sbjct: 61  MMKRSVRIHSEQTGNKAYLNLLPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSK 180
           PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALL+K
Sbjct: 121 PIDVIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180

Query: 181 LGIRPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAA 240
           LGIRPFSYGL+V+SVYDNGSVF P+VLDLTE+DLLEKF  GVSMV SLSLA+S+PTLAAA
Sbjct: 181 LGIRPFSYGLVVLSVYDNGSVFSPQVLDLTEDDLLEKFALGVSMVTSLSLAISYPTLAAA 240

Query: 241 PHMLINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
           PHMLINAYKNLLAVAVAT+YSFPQA++VKE+L DPSKFA
Sbjct: 241 PHMLINAYKNLLAVAVATDYSFPQAEKVKEYLADPSKFA 279

[Close]

BLAST of Carg20607 vs. TrEMBL
Match: tr|A0A2P5FBN1|A0A2P5FBN1_9ROSA (60S acidic ribosomal protein P0 OS=Trema orientalis OX=63057 GN=TorRG33x02_090930 PE=3 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.3e-131
Identity = 241/276 (87.32%), Postives = 262/276 (94.93%), Query Frame = 0


Query: 4   KPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMK 63
           KP++A+KK  YD KLC+LLE+Y+ VLIV ADNVGSNQLQ+IRKGLRGDS++LMGKNTMMK
Sbjct: 3   KPSKAEKKIAYDAKLCQLLEDYTQVLIVAADNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 62

Query: 64  RSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEVAKYKVGAPARVGLIAPID 123
           RSIRIHSEKTGN A +NL+P LVGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLIAPID
Sbjct: 63  RSIRIHSEKTGNQAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLIAPID 122

Query: 124 VIVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLSKLGI 183
           V+VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALL+KLGI
Sbjct: 123 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGI 182

Query: 184 RPFSYGLIVVSVYDNGSVFDPEVLDLTEEDLLEKFLSGVSMVASLSLAVSFPTLAAAPHM 243
           RPFSYGL+V+SVYDNGSVF PEVLDLTEEDL+EKF SGVSMV SL+LA+S+PTLAAAPHM
Sbjct: 183 RPFSYGLVVLSVYDNGSVFSPEVLDLTEEDLIEKFASGVSMVTSLALAISYPTLAAAPHM 242

Query: 244 LINAYKNLLAVAVATEYSFPQADEVKEFLKDPSKFA 280
             NAYKN+LAVAVATEYSFPQAD+VKEFLKDPSKFA
Sbjct: 243 FTNAYKNVLAVAVATEYSFPQADKVKEFLKDPSKFA 278

The following BLAST results are available for this feature:

BLAST of Carg20607 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964942.1	9.1e-150	100.00	60S acidic ribosomal protein P0-like [Cucurbita moschata] >XP_023520060.1 60S ac...	[more]
XP_022970458.1	7.7e-149	99.38	60S acidic ribosomal protein P0-like [Cucurbita maxima]	[more]
XP_008457380.1	6.5e-140	93.91	PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo] >XP_016902088.1 P...	[more]
XP_004145258.1	3.2e-139	93.48	PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis sativus] >KGN65800.1 hy...	[more]
XP_022150896.1	1.6e-138	92.11	60S acidic ribosomal protein P0-like [Momordica charantia]	[more]

BLAST of Carg20607 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09200.1	1.3e-129	82.01	Ribosomal protein L10 family protein	[more]
AT2G40010.1	4.8e-129	81.36	Ribosomal protein L10 family protein	[more]
AT3G11250.1	1.1e-128	81.59	Ribosomal protein L10 family protein	[more]
AT1G25260.1	7.2e-08	22.68	Ribosomal protein L10 family protein	[more]

BLAST of Carg20607 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P50346\|RLA0_SOYBN	2.1e-129	81.72	60S acidic ribosomal protein P0 OS=Glycine max OX=3847 PE=2 SV=1	[more]
sp\|Q42112\|RLA02_ARATH	2.3e-128	82.01	60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana OX=3702 GN=RPP0B PE=1 ...	[more]
sp\|O04204\|RLA01_ARATH	8.7e-128	81.36	60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana OX=3702 GN=RPP0A PE=1 ...	[more]
sp\|P57691\|RLA03_ARATH	1.9e-127	81.59	60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana OX=3702 GN=RPP0C PE=1 ...	[more]
sp\|P41095\|RLA0_ORYSJ	1.1e-125	78.49	60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08...	[more]

BLAST of Carg20607 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6N6\|A0A1S3C6N6_CUCME	4.3e-140	93.91	60S acidic ribosomal protein P0 OS=Cucumis melo OX=3656 GN=LOC103497088 PE=3 SV=...	[more]
tr\|A0A0A0LV50\|A0A0A0LV50_CUCSA	2.1e-139	93.48	60S acidic ribosomal protein P0 OS=Cucumis sativus OX=3659 GN=Csa_1G530120 PE=3 ...	[more]
tr\|F6HC03\|F6HC03_VITVI	3.3e-132	86.02	60S acidic ribosomal protein P0 OS=Vitis vinifera OX=29760 GN=VIT_13s0067g00270 ...	[more]
tr\|A0A0A0KM27\|A0A0A0KM27_CUCSA	5.7e-132	86.38	60S acidic ribosomal protein P0 OS=Cucumis sativus OX=3659 GN=Csa_5G199310 PE=3 ...	[more]
tr\|A0A2P5FBN1\|A0A2P5FBN1_9ROSA	1.3e-131	87.32	60S acidic ribosomal protein P0 OS=Trema orientalis OX=63057 GN=TorRG33x02_09093...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0042254	ribosome biogenesis

Vocabulary: **INTERPRO**
Term	Definition
IPR030670	L10E_eukaryotes
IPR001790	Ribosomal_L10P

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20607-RA	Carg20607-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 8..108 e-value: 1.3E-20 score: 73.3
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 235..321 e-value: 8.5E-18 score: 64.6
None	No IPR available	GENE3D	G3DSA:3.90.105.20		coord: 114..185 e-value: 8.7E-33 score: 113.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..322
None	No IPR available	PANTHER	PTHR21141:SF74	SUBFAMILY NOT NAMED	coord: 4..322
None	No IPR available	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 4..322
None	No IPR available	CDD	cd05795	Ribosomal_P0_L10e	coord: 9..185 e-value: 1.37176E-86 score: 259.428
None	No IPR available	SUPERFAMILY	SSF160369	Ribosomal protein L10-like	coord: 9..134
IPR030670	60S acidic ribosomal protein P0	PIRSF	PIRSF039087	L10E	coord: 2..322 e-value: 7.2E-135 score: 446.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20607	Cla008171	Watermelon (97103) v1	carwmB0376
Carg20607	Csa1G530120	Cucumber (Chinese Long) v2	carcuB0412
Carg20607	MELO3C020556	Melon (DHL92) v3.5.1	carmeB0388
Carg20607	ClCG03G000820	Watermelon (Charleston Gray)	carwcgB0375
Carg20607	CSPI01G23810	Wild cucumber (PI 183967)	carcpiB0415
Carg20607	Cucsa.147000	Cucumber (Gy14) v1	carcgyB0445
Carg20607	CmaCh13G000730	Cucurbita maxima (Rimu)	carcmaB0531
Carg20607	CmoCh13G000620	Cucurbita moschata (Rifu)	carcmoB0517
Carg20607	Lsi02G012900	Bottle gourd (USVL1VR-Ls)	carlsiB349
Carg20607	Cp4.1LG20g08010	Cucurbita pepo (Zucchini)	carcpeB0531
Carg20607	CsGy1G023290	Cucumber (Gy14) v2	carcgybB0390
Carg20607	MELO3C020556.2	Melon (DHL92) v3.6.1	carmedB0392
Carg20607	CsaV3_1G036120	Cucumber (Chinese Long) v3	carcucB0414
Carg20607	Cla97C03G051630	Watermelon (97103) v2	carwmbB0404
Carg20607	Bhi08G000429	Wax gourd	carwgoB0468

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20607	Silver-seed gourd	carcarB408
Carg20607	Cucurbita maxima (Rimu)	carcmaB0532
Carg20607	Cucurbita moschata (Rifu)	carcmoB0518
Carg20607	Cucurbita pepo (Zucchini)	carcpeB0534