Carg20589 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20589
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like
Location	Cucurbita_argyrosperma_scaffold_113 : 474945 .. 476553 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGAAATGGAAGGAAAAAGAAAGAAAAAGAAGGGGAAAAAAAGAAAAGGTGAATAGAGACACACAGGCACCGCCTCCACATTCTTTCCCCACTAGAAATCTCTATTTCCCTTCCCTCTCTCTCTCTCTCTGCTTCGCCACAGCTCTCTGTTCTGTTCTCTCTCGGAGTTTGTGTTCATCCATGGCGGTTCTCTTGTTCTTATCCTTGATGTTCATGGCCTTCACCTCTCATTCAGGTAACCCTTTTGATCTTTCAAGCTTTTCTGCAACTTCTATGGAATTTTACACATGAATCGCTTAAACCCTTTGAAGATTTTCATCTGAAATCGAAAAATTCCACTAACCCTTGGTTTAAATCTTCTTTAGATGCTATATATTGTGTTTGTAAAGATGGATTAAGCGACCAAGCCCTTCAAAAATCACTGGATTATGCTTGTGGAGCTGGAGCCGATTGTTCTCCAATCCTTCAAAATGGGGTTTGTTTTCAGCCTAATACTGTCAAAGATCATTGTAGCTATGCTGTTAATAGCTACTTTCAGCGCAAGGGTCAAGTCCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGGCTAGCCAGTCTCCTCCTGGTATCACTGATTCATATCATTTTTCACTCATGTTCTTCATCAATGGCCTTGTTTTTGTTGCTTGATCTTTGTTGGGGTTGTTTTTCTTGTGTTTTTTGAACAGCTGGAGCTTCTGGGTGTGTTTATCCTTCGAGTCCCAGGTACCATCTTCATGTTCTTCATAGTTTTTCAAGAATTTTCATTTGTTTCTTTGCTCAAAGTTACCTTTTCCTCAACTTTTTGAACTGATTTTAGTGAGAATCTGCTGCCTGATAGCATAAAAGAAGGCGTTCATTTAAGAATCCAATTCCCTTCTGGCTTTGTTCATAGCTGTTCATCTTTTTCACCTTAGAAACTTACCTAATCCTGTTTAGATGAAAGTTATCCTTCACTTTTACTGTCTCTTTCTATGCTATCTATATGCTGTTCTTCTATTTTTTACATCCAATGACAAAATTTACCATTTCAAAACTTCCATGAGTGACAATGACATGAACAATTCAACACCCCTTTCCCTCTTCTCTGTTTCAGCAACGCAGGAACCCCGTCGACCACCGTCCCGGGCACGACGCCAGGAACAATCACAAACCCATCAACAACACCACCCTCAACCATGACCCCAGGCATCACACCACCCTCAACCATGACCCCAGGTATCACCCCGCCCTCAGTGTTCGGGGGCGGGATAAGCCCGACAGGCGGGGTCGGGCTCGGTGGTAGCGGAAGTAGCATGGATGGAAACACTGCCATTGCAGCAGCAGCCTGTAACATGTTGTTGTTGTTCATAGCCATTGTGACATCTTTGTTGTAATGTTGTTTGATGTGGGTGGAGAATATGGTTCCTTATTTGTGGAATGGGAACCTGATCCTCTTGGATGTTTTTTTTCACCTTTTGTGTATCTATTAGAGGCTGTATTTTGCTTAATTTAATGGGGGGTTTTTGCAACCACTAATCAATAATTATGCTCTTTTTTCATTGTTAATTTGTTTTATAATAAAGTTTATGGGATGTGTTACTATTGTT

mRNA sequence

AGGGAAATGGAAGGAAAAAGAAAGAAAAAGAAGGGGAAAAAAAGAAAAGGTGAATAGAGACACACAGGCACCGCCTCCACATTCTTTCCCCACTAGAAATCTCTATTTCCCTTCCCTCTCTCTCTCTCTCTGCTTCGCCACAGCTCTCTGTTCTGTTCTCTCTCGGAGTTTGTGTTCATCCATGGCGGTTCTCTTGTTCTTATCCTTGATGTTCATGGCCTTCACCTCTCATTCAGATGCTATATATTGTGTTTGTAAAGATGGATTAAGCGACCAAGCCCTTCAAAAATCACTGGATTATGCTTGTGGAGCTGGAGCCGATTGTTCTCCAATCCTTCAAAATGGGGTTTGTTTTCAGCCTAATACTGTCAAAGATCATTGTAGCTATGCTGTTAATAGCTACTTTCAGCGCAAGGGTCAAGTCCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGGCTAGCCAGTCTCCTCCTGCTGGAGCTTCTGGGTGTGTTTATCCTTCGAGTCCCAGCAACGCAGGAACCCCGTCGACCACCGTCCCGGGCACGACGCCAGGAACAATCACAAACCCATCAACAACACCACCCTCAACCATGACCCCAGGCATCACACCACCCTCAACCATGACCCCAGGTATCACCCCGCCCTCAGTGTTCGGGGGCGGGATAAGCCCGACAGGCGGGGTCGGGCTCGGTGGTAGCGGAAGTAGCATGGATGGAAACACTGCCATTGCAGCAGCAGCCTGTAACATGTTGTTGTTGTTCATAGCCATTGTGACATCTTTGTTGTAATGTTGTTTGATGTGGGTGGAGAATATGGTTCCTTATTTGTGGAATGGGAACCTGATCCTCTTGGATGTTTTTTTTCACCTTTTGTGTATCTATTAGAGGCTGTATTTTGCTTAATTTAATGGGGGGTTTTTGCAACCACTAATCAATAATTATGCTCTTTTTTCATTGTTAATTTGTTTTATAATAAAGTTTATGGGATGTGTTACTATTGTT

Coding sequence (CDS)

ATGGCGGTTCTCTTGTTCTTATCCTTGATGTTCATGGCCTTCACCTCTCATTCAGATGCTATATATTGTGTTTGTAAAGATGGATTAAGCGACCAAGCCCTTCAAAAATCACTGGATTATGCTTGTGGAGCTGGAGCCGATTGTTCTCCAATCCTTCAAAATGGGGTTTGTTTTCAGCCTAATACTGTCAAAGATCATTGTAGCTATGCTGTTAATAGCTACTTTCAGCGCAAGGGTCAAGTCCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGGCTAGCCAGTCTCCTCCTGCTGGAGCTTCTGGGTGTGTTTATCCTTCGAGTCCCAGCAACGCAGGAACCCCGTCGACCACCGTCCCGGGCACGACGCCAGGAACAATCACAAACCCATCAACAACACCACCCTCAACCATGACCCCAGGCATCACACCACCCTCAACCATGACCCCAGGTATCACCCCGCCCTCAGTGTTCGGGGGCGGGATAAGCCCGACAGGCGGGGTCGGGCTCGGTGGTAGCGGAAGTAGCATGGATGGAAACACTGCCATTGCAGCAGCAGCCTGTAACATGTTGTTGTTGTTCATAGCCATTGTGACATCTTTGTTGTAA

Protein sequence

MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTVPGTTPGTITNPSTTPPSTMTPGITPPSTMTPGITPPSVFGGGISPTGGVGLGGSGSSMDGNTAIAAAACNMLLLFIAIVTSLL

Homology

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BLAST of Carg20589 vs. NCBI nr
Match: XP_023002738.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 9.1e-71
Identity = 199/203 (98.03%), Postives = 200/203 (98.52%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLLF SLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP
Sbjct: 1   MAVLLFFSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV 120
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV 120

Query: 121 PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSMDG 180
           PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SSMDG
Sbjct: 121 PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDG 180

Query: 181 NTAIAAAACNMLLLFIAIVTSLL 204
           + AIAAAACNMLLLFIAIVTSLL
Sbjct: 181 SAAIAAAACNMLLLFIAIVTSLL 203

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BLAST of Carg20589 vs. NCBI nr
Match: XP_023537325.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.6 bits (701), Expect = 2.6e-70
Identity = 198/203 (97.54%), Postives = 199/203 (98.03%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLLF SLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP
Sbjct: 1   MAVLLFFSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV 120
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV 120

Query: 121 PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSMDG 180
           PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SSMDG
Sbjct: 121 PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDG 180

Query: 181 NTAIAAAACNMLLLFIAIVTSLL 204
           + AIAAA CNMLLLFIAIVTSLL
Sbjct: 181 SAAIAAAGCNMLLLFIAIVTSLL 203

[Close]

BLAST of Carg20589 vs. NCBI nr
Match: XP_022951389.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 2.9e-69
Identity = 196/203 (96.55%), Postives = 198/203 (97.54%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLLF SLMFMAFTSHS A YCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP
Sbjct: 1   MAVLLFFSLMFMAFTSHSGATYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV 120
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTT+
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTI 120

Query: 121 PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSMDG 180
           PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SSMDG
Sbjct: 121 PGTTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSMDG 180

Query: 181 NTAIAAAACNMLLLFIAIVTSLL 204
           + AIAAAACNMLLLFIAIVTSLL
Sbjct: 181 SAAIAAAACNMLLLFIAIVTSLL 203

[Close]

BLAST of Carg20589 vs. NCBI nr
Match: XP_008445454.1 (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 1.5e-49
Identity = 102/116 (87.93%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLL   L+F+AFTSHS A YC+CKDGLSDQALQKSLDYACGAGADCS ILQNG CFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTP 117
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAM SQSPPA ASGCVYPSSPS  GTP
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSFTGTP 116

[Close]

BLAST of Carg20589 vs. NCBI nr
Match: XP_022131475.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Momordica charantia])

HSP 1 Score: 204.5 bits (519), Expect = 3.4e-49
Identity = 99/116 (85.34%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MA++L   L+FMAFT HS A YCVCKDG SDQALQKSLDYACGAGADC+PILQNG CFQP
Sbjct: 1   MAIILLCYLLFMAFTGHSSATYCVCKDGQSDQALQKSLDYACGAGADCTPILQNGPCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTP 117
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTA  S SPPAGASGCVYPSSPS  GTP
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTATPSPSPPAGASGCVYPSSPSGTGTP 116

[Close]

BLAST of Carg20589 vs. TAIR10
Match: AT2G03505.1 (Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-32
Identity = 65/113 (57.52%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 5   LFLSLMF-MAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTV 64
           L LSL+F +A T++S A YC+C+DG+ ++ LQ S+DYACG   DC+PI + G C+QPNT+
Sbjct: 3   LLLSLLFLLALTTYSSATYCLCRDGVGEKDLQTSIDYACGVLKDCNPIHEKGPCYQPNTI 62

Query: 65  KDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQS-PPAGASGCVYPSSPSNAGT 116
           K HC +AVN+YFQR GQ+ GSC+FSGTA  SQ+ P    +GC+YPSSP +AGT
Sbjct: 63  KSHCDWAVNTYFQRFGQISGSCNFSGTATTSQNLPSTVVTGCLYPSSPGSAGT 115

[Close]

BLAST of Carg20589 vs. TAIR10
Match: AT1G13830.1 (Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 135.2 bits (339), Expect = 4.5e-32
Identity = 66/113 (58.41%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           M VLL L L+ ++ T+ S AIYC+CKDG+ D  LQ S+DYACG  ADC+PI   G C+QP
Sbjct: 1   MKVLLGL-LLLLSLTNSSSAIYCLCKDGIGDTELQTSIDYACGTLADCNPIHDKGTCYQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAG-ASGCVYPSSPSN 113
           +T+K HC +AVNSYFQ   QV GSC+FSGTA  + +PP+  A+GC+YPSSPS+
Sbjct: 61  DTIKSHCDWAVNSYFQNAAQVPGSCNFSGTATTNPNPPSNLANGCIYPSSPSS 112

[Close]

BLAST of Carg20589 vs. TAIR10
Match: AT5G08000.1 (glucan endo-1,3-beta-glucosidase-like protein 3)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 0


Query: 5   LFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTVK 64
           L L L+ +    H+ A +CVCK GLSD  LQK+LDYACG GADC+P    G CF P+ V+
Sbjct: 4   LVLYLLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVR 63

Query: 65  DHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPS-NAGTPSTTVPGT 124
            HC+YAVNS+FQ+KGQ   SC+F+GTA  + + P+  +GC +PSS S ++G+ STTV   
Sbjct: 64  AHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPS-YTGCAFPSSASGSSGSGSTTV--- 122

Query: 125 TPG 127
           TPG
Sbjct: 124 TPG 122

[Close]

BLAST of Carg20589 vs. TAIR10
Match: AT5G61130.1 (plasmodesmata callose-binding protein 1)

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 5   LFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTVK 64
           L LSL+ ++   HS A +CVCK GLSD  LQ +LDYACG GADC+P      CF P+ V+
Sbjct: 4   LVLSLLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVR 63

Query: 65  DHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYP 108
            HC+YAVNS+FQ+KGQ  GSC+F GTA  + S P+  +GC +P
Sbjct: 64  SHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPS-YTGCAFP 105

[Close]

BLAST of Carg20589 vs. TAIR10
Match: AT1G18650.1 (plasmodesmata callose-binding protein 3)

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-25
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1  MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
          MAV + L ++ +A   HS   +CVCK+GLS+  LQK+LDYACGAGADC PI Q G CF P
Sbjct: 1  MAVFV-LVMILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNP 60

Query: 61 NTVKDHCSYAVNSYFQRKGQVQGS 85
          NTVK HCSYAVNS+FQ+KGQ  G+
Sbjct: 61 NTVKSHCSYAVNSFFQKKGQSLGT 83

[Close]

BLAST of Carg20589 vs. Swiss-Prot
Match: sp|Q9SD84|PDCB2_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-27
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 0


Query: 5   LFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTVK 64
           L L L+ +    H+ A +CVCK GLSD  LQK+LDYACG GADC+P    G CF P+ V+
Sbjct: 4   LVLYLLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVR 63

Query: 65  DHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPS-NAGTPSTTVPGT 124
            HC+YAVNS+FQ+KGQ   SC+F+GTA  + + P+  +GC +PSS S ++G+ STTV   
Sbjct: 64  AHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPS-YTGCAFPSSASGSSGSGSTTV--- 122

Query: 125 TPG 127
           TPG
Sbjct: 124 TPG 122

[Close]

BLAST of Carg20589 vs. Swiss-Prot
Match: sp|Q9FNQ2|PDCB1_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.6e-26
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 5   LFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQPNTVK 64
           L LSL+ ++   HS A +CVCK GLSD  LQ +LDYACG GADC+P      CF P+ V+
Sbjct: 4   LVLSLLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVR 63

Query: 65  DHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYP 108
            HC+YAVNS+FQ+KGQ  GSC+F GTA  + S P+  +GC +P
Sbjct: 64  SHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPS-YTGCAFP 105

[Close]

BLAST of Carg20589 vs. Swiss-Prot
Match: sp|Q9FZ86|PDCB3_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.3e-24
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1  MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
          MAV + L ++ +A   HS   +CVCK+GLS+  LQK+LDYACGAGADC PI Q G CF P
Sbjct: 1  MAVFV-LVMILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNP 60

Query: 61 NTVKDHCSYAVNSYFQRKGQVQGS 85
          NTVK HCSYAVNS+FQ+KGQ  G+
Sbjct: 61 NTVKSHCSYAVNSFFQKKGQSLGT 83

[Close]

BLAST of Carg20589 vs. Swiss-Prot
Match: sp|Q93V72|PDCB4_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-22
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 1  MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
          M+VLL L L+   FT +S+A YC+CK+G ++Q LQK++DYACG GADC+ I   G C+QP
Sbjct: 1  MSVLLPLCLIISMFT-YSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQP 60

Query: 61 NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMAS 95
          NTVK+HC  AVNSY+Q+K     +CDF+G A  S
Sbjct: 61 NTVKNHCDVAVNSYYQKKASSGATCDFNGAASPS 92

[Close]

BLAST of Carg20589 vs. Swiss-Prot
Match: sp|Q9FZD0|CBX8D_ARATH (Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At1g26450 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-19
Identity = 48/89 (53.93%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
          MAVLL L L+   FT +S+A  CVCKD  ++  LQK +D+ACG GADC+ I   G C+QP
Sbjct: 1  MAVLLPLFLLSFMFT-YSNAAVCVCKDA-NELDLQKVIDFACGGGADCAQIQTTGACYQP 60

Query: 61 NTVKDHCSYAVNSYFQRKGQVQGSCDFSG 90
          NT+K+HC  AVNSY+Q+K     +CDF+G
Sbjct: 61 NTLKNHCDVAVNSYYQKKASTGATCDFNG 87

[Close]

BLAST of Carg20589 vs. TrEMBL
Match: tr|A0A1S3BDH0|A0A1S3BDH0_CUCME (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo OX=3656 GN=LOC103488471 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 102/116 (87.93%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLL   L+F+AFTSHS A YC+CKDGLSDQALQKSLDYACGAGADCS ILQNG CFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTP 117
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAM SQSPPA ASGCVYPSSPS  GTP
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSFTGTP 116

[Close]

BLAST of Carg20589 vs. TrEMBL
Match: tr|A0A0A0KDN8|A0A0A0KDN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366460 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.9e-49
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MAVLL   L+F+AFTSHS A YC+CKDGLSDQALQKSLDYACGAGADC+PILQNG C+QP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTPILQNGPCYQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPS 118
           NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTA  SQSPPA ASGCVYPSSPS  GTP+
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTASPSQSPPAVASGCVYPSSPSFTGTPT 117

[Close]

BLAST of Carg20589 vs. TrEMBL
Match: tr|G7JHI2|G7JHI2_MEDTR (Carbohydrate-binding X8 domain protein OS=Medicago truncatula OX=3880 GN=11443398 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.2e-44
Identity = 89/122 (72.95%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MA L++  L+F++ T HS A+YCVCKDG+S Q LQK++DYACG GADCSPILQNG CFQP
Sbjct: 1   MAFLVYF-LIFLSLTGHSSALYCVCKDGVSSQLLQKAIDYACGTGADCSPILQNGPCFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGTPSTTV 120
           NTVKDHC+YAVNSY+QRKG VQGSCDF+G A  +Q+PP  ASGCVYPSSP NAGTPST  
Sbjct: 61  NTVKDHCNYAVNSYYQRKGNVQGSCDFAGAAAPTQTPPTAASGCVYPSSPGNAGTPSTGS 120

Query: 121 PG 123
           PG
Sbjct: 121 PG 121

[Close]

BLAST of Carg20589 vs. TrEMBL
Match: tr|I1JED8|I1JED8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G116100 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.3e-44
Identity = 87/115 (75.65%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MA++++  ++F+A T HS A+YCVCKDG+ DQALQK++DYACGAGADC+PILQNG CFQP
Sbjct: 1   MALVIYF-VLFLALTGHSSALYCVCKDGVGDQALQKAIDYACGAGADCTPILQNGACFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGT 116
           NTVKDHC+YAVNSYFQRKGQ QGSCDFSG A  SQ+PP  AS CVYPSSPSNAGT
Sbjct: 61  NTVKDHCNYAVNSYFQRKGQAQGSCDFSGAATPSQTPPTAASTCVYPSSPSNAGT 114

[Close]

BLAST of Carg20589 vs. TrEMBL
Match: tr|C6TG21|C6TG21_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.3e-44
Identity = 87/115 (75.65%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MAVLLFLSLMFMAFTSHSDAIYCVCKDGLSDQALQKSLDYACGAGADCSPILQNGVCFQP 60
           MA++++  ++F+A T HS A+YCVCKDG+ DQALQK++DYACGAGADC+PILQNG CFQP
Sbjct: 1   MALVIYF-VLFLALTGHSSALYCVCKDGVGDQALQKAIDYACGAGADCTPILQNGACFQP 60

Query: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMASQSPPAGASGCVYPSSPSNAGT 116
           NTVKDHC+YAVNSYFQRKGQ QGSCDFSG A  SQ+PP  AS CVYPSSPSNAGT
Sbjct: 61  NTVKDHCNYAVNSYFQRKGQAQGSCDFSGAATPSQTPPTAASTCVYPSSPSNAGT 114

The following BLAST results are available for this feature:

BLAST of Carg20589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002738.1	9.1e-71	98.03	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita maxima]	[more]
XP_023537325.1	2.6e-70	97.54	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022951389.1	2.9e-69	96.55	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita moschata]	[more]
XP_008445454.1	1.5e-49	87.93	PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucumis melo]	[more]
XP_022131475.1	3.4e-49	85.34	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Momordica charantia]	[more]

BLAST of Carg20589 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03505.1	1.2e-32	57.52	Carbohydrate-binding X8 domain superfamily protein	[more]
AT1G13830.1	4.5e-32	58.41	Carbohydrate-binding X8 domain superfamily protein	[more]
AT5G08000.1	1.4e-28	52.85	glucan endo-1,3-beta-glucosidase-like protein 3	[more]
AT5G61130.1	2.0e-27	54.37	plasmodesmata callose-binding protein 1	[more]
AT1G18650.1	2.4e-25	63.10	plasmodesmata callose-binding protein 3	[more]

BLAST of Carg20589 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SD84\|PDCB2_ARATH	2.5e-27	52.85	PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2...	[more]
sp\|Q9FNQ2\|PDCB1_ARATH	3.6e-26	54.37	PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1...	[more]
sp\|Q9FZ86\|PDCB3_ARATH	4.3e-24	63.10	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3...	[more]
sp\|Q93V72\|PDCB4_ARATH	4.1e-22	55.32	PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4...	[more]
sp\|Q9FZD0\|CBX8D_ARATH	3.2e-19	53.93	Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Carg20589 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDH0\|A0A1S3BDH0_CUCME	1.0e-49	87.93	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A0A0KDN8\|A0A0A0KDN8_CUCSA	2.9e-49	85.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366460 PE=4 SV=1	[more]
tr\|G7JHI2\|G7JHI2_MEDTR	2.2e-44	72.95	Carbohydrate-binding X8 domain protein OS=Medicago truncatula OX=3880 GN=1144339...	[more]
tr\|I1JED8\|I1JED8_SOYBN	6.3e-44	75.65	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G116100 PE=4 SV=1	[more]
tr\|C6TG21\|C6TG21_SOYBN	6.3e-44	75.65	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012946	X8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20589-RA	Carg20589-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 21..106 e-value: 3.0E-39 score: 146.4
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 22..92 e-value: 1.8E-21 score: 76.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..137
None	No IPR available	PANTHER	PTHR32227:SF147	SUBFAMILY NOT NAMED	coord: 18..136
None	No IPR available	PANTHER	PTHR32227	FAMILY NOT NAMED	coord: 18..136

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20589	Cla022023	Watermelon (97103) v1	carwmB0649
Carg20589	Csa6G366460	Cucumber (Chinese Long) v2	carcuB0673
Carg20589	MELO3C011423	Melon (DHL92) v3.5.1	carmeB0649
Carg20589	ClCG08G010380	Watermelon (Charleston Gray)	carwcgB0633
Carg20589	CSPI06G19640	Wild cucumber (PI 183967)	carcpiB0683
Carg20589	Cucsa.327840	Cucumber (Gy14) v1	carcgyB0729
Carg20589	CmaCh12G000990	Cucurbita maxima (Rimu)	carcmaB0920
Carg20589	CmoCh12G000780	Cucurbita moschata (Rifu)	carcmoB0893
Carg20589	CmoCh05G004700	Cucurbita moschata (Rifu)	carcmoB0894
Carg20589	Lsi08G008940	Bottle gourd (USVL1VR-Ls)	carlsiB593
Carg20589	Cp4.1LG07g00850	Cucurbita pepo (Zucchini)	carcpeB0925
Carg20589	Cp4.1LG11g03880	Cucurbita pepo (Zucchini)	carcpeB0924
Carg20589	CsGy6G019200	Cucumber (Gy14) v2	carcgybB0649
Carg20589	MELO3C011423.2	Melon (DHL92) v3.6.1	carmedB0659
Carg20589	CsaV3_6G033650	Cucumber (Chinese Long) v3	carcucB0685
Carg20589	Cla97C08G153240	Watermelon (97103) v2	carwmbB0679
Carg20589	Bhi04G000905	Wax gourd	carwgoB0766

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20589	Carg09269	Silver-seed gourd	carcarB164

The following block(s) are covering this gene:

None