Carg09269 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09269
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like
Location	Cucurbita_argyrosperma_scaffold_018 : 306451 .. 308224 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCCCCCCTTTCTCTCCCTCTCTCTCTGGTTTTGCCATTTCTCTTAAAACAACCATAGTTCTCTTCTCTGCACTCATCTTTTTCAGAATCTGAGCTCAACCATGGCGGTTCTCTTGCTCTGTTATCTCATTTTCTTGGCCTTCACTAGCCATTCAAGTAATCTTCTCTGATGATTTTCATATTCTTCCCCACCATGGAAACAAAAAGGTCAATAGAAAACTAACTGTTGGCTCTATTTCTTGAACTTCTTTAGGTGCAAGCTATTGTATTTGTAAAGATGGACAGAGCGATCAAGCCCTTCAGAAGACACTGGATTATGCCTGTGGAGCTGGAGCTGATTGTACTCCAATTCTTCAAAATGGCCCTTGTTTTCAACCCAACACTATAAAGGATCACTGTAGCTATGCTGTTAATAGCTACTTTCAAAGGAAGGGTCAGGTTCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGCTTAGCCAGTCTCCTCCTGGTATAATACCTTTCTCTTTCATTTTTACTCGTTTTCTTCATCAAATGGTTTGGTTTTTGTTAACACTTTTTGGGTCTTTTTTTTCTCTTGTTTTTTTGACAGTTGAAGCTTCTGGGTGTGTTTATTCTTCCAGTTCCAGGTACCCATTTCAATTCCCTCACTCTCTTGCAGTTTTTTTGAAGTGATATCACAGTCAACTTATAGATAGCAATCTGTTTCAATAACATTCTAAATGAAAAGTGGTTTTGAGTTGAATACTTTAGCAAGATCCCACAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGTGTTTTTAAACCGTGAGTTTGATGGCGATACGTAACGAGTTAAAACGGACAATATCTACTAGTAGTGGGTTTGGGCAGTTACAAATGGTACCAGCAATGACCCTGGACACCAAGAGGGTGGGATTGTGAGATCCCACATCGGTTGGAGAGGGAAACAAAGTATTCCTTATAAGGGTATAGAAACCTCTCCCTACCAGACGCGTTTTAAAATTGCGAGGCTGACGGCAATACATAACAGGCTAAAACGGACAATATCTGCTAGCGATGGATTTGGACAAAGATTACGTGAGTTGGGGAGTAGTTGAAACATGAAAATGTTTAAGGAAACTAAAGCACTAATCCTAAATGATACTCAGATATCTCCATTTTCTTTCAACTGGGAATTTGGTTCCCAAAGTGGCATATTCCAATTTCCAAGAGACTCTTTCTTTTACCAAAAGTTACCTTTTTCCCAACTTTTTCAGCTGGTGTTGGTGAGAATCTGCTGCCTGATAGAGAAAAAGAAACTTCTATCAAGAATCCAATTCCTTTCCCTTTTTGGGGATGTGTGCATAGCTCTAGCATATTTTTTCCCTTAGAAAGTTACTGTTCTTGATAACTTAATCTAGATGGAAAATGTCCAATGAAAAATTAACCATTCAAGTTTGCATTAGTGACAATGACATAAACAGATGAACACCCTTCTCTGTTTCCAGCAACACAGGAACTCCAACCAGCACCACCCCGTCAACCACCGTGCCCAGCGCAACACTGGGAACCACCACAAACCCGTCAACACCACCACCCTCGACCACAACCTCCCCATCGGTGTTTGGGAGCGGGATAAGCCCGACAGGTAGTGTCGGTTTCGGTGGTAGCGGGAATAACATGGATGGCAGTGCTGCTGCAGGTCTCACTGCAGCAGCCTTTAACTTGTTCTTCTTCGCAGCCACTGTCACATTTTGGTGGTCAATGTTCTGTTAA

mRNA sequence

TAGCCCCCCTTTCTCTCCCTCTCTCTCTGGTTTTGCCATTTCTCTTAAAACAACCATAGTTCTCTTCTCTGCACTCATCTTTTTCAGAATCTGAGCTCAACCATGGCGGTTCTCTTGCTCTGTTATCTCATTTTCTTGGCCTTCACTAGCCATTCAAGTGCAAGCTATTGTATTTGTAAAGATGGACAGAGCGATCAAGCCCTTCAGAAGACACTGGATTATGCCTGTGGAGCTGGAGCTGATTGTACTCCAATTCTTCAAAATGGCCCTTGTTTTCAACCCAACACTATAAAGGATCACTGTAGCTATGCTGTTAATAGCTACTTTCAAAGGAAGGGTCAGGTTCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGCTTAGCCAGTCTCCTCCTGTTGAAGCTTCTGGGTGTGTTTATTCTTCCAGTTCCAGCAACACAGGAACTCCAACCAGCACCACCCCGTCAACCACCGTGCCCAGCGCAACACTGGGAACCACCACAAACCCGTCAACACCACCACCCTCGACCACAACCTCCCCATCGGTGTTTGGGAGCGGGATAAGCCCGACAGGTAGTGTCGGTTTCGGTGGTAGCGGGAATAACATGGATGGCAGTGCTGCTGCAGGTCTCACTGCAGCAGCCTTTAACTTGTTCTTCTTCGCAGCCACTGTCACATTTTGGTGGTCAATGTTCTGTTAA

Coding sequence (CDS)

ATGGCGGTTCTCTTGCTCTGTTATCTCATTTTCTTGGCCTTCACTAGCCATTCAAGTGCAAGCTATTGTATTTGTAAAGATGGACAGAGCGATCAAGCCCTTCAGAAGACACTGGATTATGCCTGTGGAGCTGGAGCTGATTGTACTCCAATTCTTCAAAATGGCCCTTGTTTTCAACCCAACACTATAAAGGATCACTGTAGCTATGCTGTTAATAGCTACTTTCAAAGGAAGGGTCAGGTTCAAGGGAGCTGTGATTTTTCAGGCACTGCCATGCTTAGCCAGTCTCCTCCTGTTGAAGCTTCTGGGTGTGTTTATTCTTCCAGTTCCAGCAACACAGGAACTCCAACCAGCACCACCCCGTCAACCACCGTGCCCAGCGCAACACTGGGAACCACCACAAACCCGTCAACACCACCACCCTCGACCACAACCTCCCCATCGGTGTTTGGGAGCGGGATAAGCCCGACAGGTAGTGTCGGTTTCGGTGGTAGCGGGAATAACATGGATGGCAGTGCTGCTGCAGGTCTCACTGCAGCAGCCTTTAACTTGTTCTTCTTCGCAGCCACTGTCACATTTTGGTGGTCAATGTTCTGTTAA

Protein sequence

MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQPNTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNTGTPTSTTPSTTVPSATLGTTTNPSTPPPSTTTSPSVFGSGISPTGSVGFGGSGNNMDGSAAAGLTAAAFNLFFFAATVTFWWSMFC

Homology

[Close]

BLAST of Carg09269 vs. NCBI nr
Match: XP_023546942.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243.0 bits (619), Expect = 8.3e-61
Identity = 198/199 (99.50%), Postives = 198/199 (99.50%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNTXXXXXXX 120
           NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNTXXXXXXX
Sbjct: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNTXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XFNLFFFAATVTFWWSMFC 200
           XFNLFFF ATVTFWWSMFC
Sbjct: 181 XFNLFFFTATVTFWWSMFC 199

[Close]

BLAST of Carg09269 vs. NCBI nr
Match: XP_022962123.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita moschata])

HSP 1 Score: 242.7 bits (618), Expect = 1.1e-60
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MAVLLLC+LIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP
Sbjct: 1   MAVLLLCHLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNTXXXXXXX 120
           NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNTXXXXXXX
Sbjct: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNTXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 XFNLFFFAATVTFWWSMFC 200
           XFNLFFFAATVTFWWSMFC
Sbjct: 181 XFNLFFFAATVTFWWSMFC 199

[Close]

BLAST of Carg09269 vs. NCBI nr
Match: XP_004144176.1 (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus] >KGN47648.1 hypothetical protein Csa_6G366460 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 7.8e-51
Identity = 101/113 (89.38%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MAVLLLCYLIFLAFTSHSSA+YCICKDG SDQALQK+LDYACGAGADCTPILQNGPC+QP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTPILQNGPCYQP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNT 114
           NT+KDHCSYAVNSYFQRKGQVQGSCDFSGTA  SQSPP  ASGCVY SS S T
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTASPSQSPPAVASGCVYPSSPSFT 113

[Close]

BLAST of Carg09269 vs. NCBI nr
Match: XP_008445454.1 (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucumis melo])

HSP 1 Score: 208.8 bits (530), Expect = 1.7e-50
Identity = 101/113 (89.38%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MAVLLLCYLIFLAFTSHSSA+YCICKDG SDQALQK+LDYACGAGADC+ ILQNGPCFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNT 114
           NT+KDHCSYAVNSYFQRKGQVQGSCDFSGTAM SQSPP  ASGCVY SS S T
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSFT 113

[Close]

BLAST of Carg09269 vs. NCBI nr
Match: XP_022131475.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Momordica charantia])

HSP 1 Score: 208.0 bits (528), Expect = 3.0e-50
Identity = 96/113 (84.96%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MA++LLCYL+F+AFT HSSA+YC+CKDGQSDQALQK+LDYACGAGADCTPILQNGPCFQP
Sbjct: 1   MAIILLCYLLFMAFTGHSSATYCVCKDGQSDQALQKSLDYACGAGADCTPILQNGPCFQP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNT 114
           NT+KDHCSYAVNSYFQRKGQVQGSCDFSGTA  S SPP  ASGCVY SS S T
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTATPSPSPPAGASGCVYPSSPSGT 113

[Close]

BLAST of Carg09269 vs. TAIR10
Match: AT2G03505.1 (Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 134.0 bits (336), Expect = 9.9e-32
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 4   LLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQPNTI 63
           LLL  L  LA T++SSA+YC+C+DG  ++ LQ ++DYACG   DC PI + GPC+QPNTI
Sbjct: 3   LLLSLLFLLALTTYSSATYCLCRDGVGEKDLQTSIDYACGVLKDCNPIHEKGPCYQPNTI 62

Query: 64  KDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQS-PPVEASGCVYSSS 110
           K HC +AVN+YFQR GQ+ GSC+FSGTA  SQ+ P    +GC+Y SS
Sbjct: 63  KSHCDWAVNTYFQRFGQISGSCNFSGTATTSQNLPSTVVTGCLYPSS 109

[Close]

BLAST of Carg09269 vs. TAIR10
Match: AT1G13830.1 (Carbohydrate-binding X8 domain superfamily protein)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-30
Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 4   LLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQPNTI 63
           +LL  L+ L+ T+ SSA YC+CKDG  D  LQ ++DYACG  ADC PI   G C+QP+TI
Sbjct: 3   VLLGLLLLLSLTNSSSAIYCLCKDGIGDTELQTSIDYACGTLADCNPIHDKGTCYQPDTI 62

Query: 64  KDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVE-ASGCVYSSSSSNT 114
           K HC +AVNSYFQ   QV GSC+FSGTA  + +PP   A+GC+Y SS S+T
Sbjct: 63  KSHCDWAVNSYFQNAAQVPGSCNFSGTATTNPNPPSNLANGCIYPSSPSST 113

[Close]

BLAST of Carg09269 vs. TAIR10
Match: AT5G08000.1 (glucan endo-1,3-beta-glucosidase-like protein 3)

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-29
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 5   LLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQPNTIK 64
           L+ YL+ L    H+SAS+C+CK G SD  LQKTLDYACG GADC P    G CF P+ ++
Sbjct: 4   LVLYLLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVR 63

Query: 65  DHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNT 114
            HC+YAVNS+FQ+KGQ   SC+F+GTA L+ + P   +GC + SS+S +
Sbjct: 64  AHCNYAVNSFFQKKGQASESCNFTGTATLTTTDP-SYTGCAFPSSASGS 111

[Close]

BLAST of Carg09269 vs. TAIR10
Match: AT1G18650.1 (plasmodesmata callose-binding protein 3)

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-27
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
          MAV +L  +I LA   HSS ++C+CK+G S+  LQKTLDYACGAGADC PI Q GPCF P
Sbjct: 1  MAVFVL-VMILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNP 60

Query: 61 NTIKDHCSYAVNSYFQRKGQVQGS 85
          NT+K HCSYAVNS+FQ+KGQ  G+
Sbjct: 61 NTVKSHCSYAVNSFFQKKGQSLGT 83

[Close]

BLAST of Carg09269 vs. TAIR10
Match: AT5G61130.1 (plasmodesmata callose-binding protein 1)

HSP 1 Score: 117.9 bits (294), Expect = 7.3e-27
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MA L+L  L+ L+   HSSAS+C+CK G SD  LQ TLDYACG GADC P      CF P
Sbjct: 1   MAALVLS-LLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVY 107
           + ++ HC+YAVNS+FQ+KGQ  GSC+F GTA  + S P   +GC +
Sbjct: 61  DNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDP-SYTGCAF 104

[Close]

BLAST of Carg09269 vs. Swiss-Prot
Match: sp|Q9SD84|PDCB2_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.9e-28
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 5   LLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQPNTIK 64
           L+ YL+ L    H+SAS+C+CK G SD  LQKTLDYACG GADC P    G CF P+ ++
Sbjct: 4   LVLYLLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVR 63

Query: 65  DHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNT 114
            HC+YAVNS+FQ+KGQ   SC+F+GTA L+ + P   +GC + SS+S +
Sbjct: 64  AHCNYAVNSFFQKKGQASESCNFTGTATLTTTDP-SYTGCAFPSSASGS 111

[Close]

BLAST of Carg09269 vs. Swiss-Prot
Match: sp|Q9FZ86|PDCB3_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.9e-26
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
          MAV +L  +I LA   HSS ++C+CK+G S+  LQKTLDYACGAGADC PI Q GPCF P
Sbjct: 1  MAVFVL-VMILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNP 60

Query: 61 NTIKDHCSYAVNSYFQRKGQVQGS 85
          NT+K HCSYAVNS+FQ+KGQ  G+
Sbjct: 61 NTVKSHCSYAVNSFFQKKGQSLGT 83

[Close]

BLAST of Carg09269 vs. Swiss-Prot
Match: sp|Q9FNQ2|PDCB1_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MA L+L  L+ L+   HSSAS+C+CK G SD  LQ TLDYACG GADC P      CF P
Sbjct: 1   MAALVLS-LLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVY 107
           + ++ HC+YAVNS+FQ+KGQ  GSC+F GTA  + S P   +GC +
Sbjct: 61  DNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDP-SYTGCAF 104

[Close]

BLAST of Carg09269 vs. Swiss-Prot
Match: sp|Q93V72|PDCB4_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-22
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1  MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
          M+VLL   LI   FT +S+A+YC+CK+G ++Q LQK +DYACG GADCT I   G C+QP
Sbjct: 1  MSVLLPLCLIISMFT-YSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQP 60

Query: 61 NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTA 92
          NT+K+HC  AVNSY+Q+K     +CDF+G A
Sbjct: 61 NTVKNHCDVAVNSYYQKKASSGATCDFNGAA 89

[Close]

BLAST of Carg09269 vs. Swiss-Prot
Match: sp|Q9FZD0|CBX8D_ARATH (Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At1g26450 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-19
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
          MAVLL  +L+   FT +S+A+ C+CKD  ++  LQK +D+ACG GADC  I   G C+QP
Sbjct: 1  MAVLLPLFLLSFMFT-YSNAAVCVCKDA-NELDLQKVIDFACGGGADCAQIQTTGACYQP 60

Query: 61 NTIKDHCSYAVNSYFQRKGQVQGSCDFSG 90
          NT+K+HC  AVNSY+Q+K     +CDF+G
Sbjct: 61 NTLKNHCDVAVNSYYQKKASTGATCDFNG 87

[Close]

BLAST of Carg09269 vs. TrEMBL
Match: tr|A0A0A0KDN8|A0A0A0KDN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366460 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.2e-51
Identity = 101/113 (89.38%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MAVLLLCYLIFLAFTSHSSA+YCICKDG SDQALQK+LDYACGAGADCTPILQNGPC+QP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCTPILQNGPCYQP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNT 114
           NT+KDHCSYAVNSYFQRKGQVQGSCDFSGTA  SQSPP  ASGCVY SS S T
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTASPSQSPPAVASGCVYPSSPSFT 113

[Close]

BLAST of Carg09269 vs. TrEMBL
Match: tr|A0A1S3BDH0|A0A1S3BDH0_CUCME (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo OX=3656 GN=LOC103488471 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 101/113 (89.38%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAVLLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQP 60
           MAVLLLCYLIFLAFTSHSSA+YCICKDG SDQALQK+LDYACGAGADC+ ILQNGPCFQP
Sbjct: 1   MAVLLLCYLIFLAFTSHSSATYCICKDGLSDQALQKSLDYACGAGADCSQILQNGPCFQP 60

Query: 61  NTIKDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSNT 114
           NT+KDHCSYAVNSYFQRKGQVQGSCDFSGTAM SQSPP  ASGCVY SS S T
Sbjct: 61  NTVKDHCSYAVNSYFQRKGQVQGSCDFSGTAMPSQSPPAVASGCVYPSSPSFT 113

[Close]

BLAST of Carg09269 vs. TrEMBL
Match: tr|V7C5Q7|V7C5Q7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G043000g PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 4   LLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQPNTI 63
           LL+C+++FLAFT HSSA YC+CKDG  DQALQK +DYACGAGADCTPILQNG CFQPNT+
Sbjct: 3   LLMCFVLFLAFTGHSSALYCVCKDGVGDQALQKAIDYACGAGADCTPILQNGACFQPNTV 62

Query: 64  KDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSN 113
           KDHC+YAVNSYFQRKGQ QGSCDF+G A  SQ+PP   S CVY SS  N
Sbjct: 63  KDHCNYAVNSYFQRKGQGQGSCDFAGAATPSQNPPTSTSSCVYPSSPGN 111

[Close]

BLAST of Carg09269 vs. TrEMBL
Match: tr|I1JED8|I1JED8_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G116100 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 4   LLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQPNTI 63
           L++ +++FLA T HSSA YC+CKDG  DQALQK +DYACGAGADCTPILQNG CFQPNT+
Sbjct: 3   LVIYFVLFLALTGHSSALYCVCKDGVGDQALQKAIDYACGAGADCTPILQNGACFQPNTV 62

Query: 64  KDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSN 113
           KDHC+YAVNSYFQRKGQ QGSCDFSG A  SQ+PP  AS CVY SS SN
Sbjct: 63  KDHCNYAVNSYFQRKGQAQGSCDFSGAATPSQTPPTAASTCVYPSSPSN 111

[Close]

BLAST of Carg09269 vs. TrEMBL
Match: tr|C6TG21|C6TG21_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 4   LLLCYLIFLAFTSHSSASYCICKDGQSDQALQKTLDYACGAGADCTPILQNGPCFQPNTI 63
           L++ +++FLA T HSSA YC+CKDG  DQALQK +DYACGAGADCTPILQNG CFQPNT+
Sbjct: 3   LVIYFVLFLALTGHSSALYCVCKDGVGDQALQKAIDYACGAGADCTPILQNGACFQPNTV 62

Query: 64  KDHCSYAVNSYFQRKGQVQGSCDFSGTAMLSQSPPVEASGCVYSSSSSN 113
           KDHC+YAVNSYFQRKGQ QGSCDFSG A  SQ+PP  AS CVY SS SN
Sbjct: 63  KDHCNYAVNSYFQRKGQAQGSCDFSGAATPSQTPPTAASTCVYPSSPSN 111

The following BLAST results are available for this feature:

BLAST of Carg09269 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546942.1	8.3e-61	99.50	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962123.1	1.1e-60	99.50	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucurbita moschata]	[more]
XP_004144176.1	7.8e-51	89.38	PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus] >KGN47648.1...	[more]
XP_008445454.1	1.7e-50	89.38	PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Cucumis melo]	[more]
XP_022131475.1	3.0e-50	84.96	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Momordica charantia]	[more]

BLAST of Carg09269 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03505.1	9.9e-32	57.94	Carbohydrate-binding X8 domain superfamily protein	[more]
AT1G13830.1	1.4e-30	56.76	Carbohydrate-binding X8 domain superfamily protein	[more]
AT5G08000.1	1.6e-29	53.21	glucan endo-1,3-beta-glucosidase-like protein 3	[more]
AT1G18650.1	3.3e-27	65.48	plasmodesmata callose-binding protein 3	[more]
AT5G61130.1	7.3e-27	53.77	plasmodesmata callose-binding protein 1	[more]

BLAST of Carg09269 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SD84\|PDCB2_ARATH	2.9e-28	53.21	PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2...	[more]
sp\|Q9FZ86\|PDCB3_ARATH	5.9e-26	65.48	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3...	[more]
sp\|Q9FNQ2\|PDCB1_ARATH	1.3e-25	53.77	PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1...	[more]
sp\|Q93V72\|PDCB4_ARATH	3.1e-22	56.04	PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4...	[more]
sp\|Q9FZD0\|CBX8D_ARATH	1.1e-19	51.69	Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Carg09269 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDN8\|A0A0A0KDN8_CUCSA	5.2e-51	89.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366460 PE=4 SV=1	[more]
tr\|A0A1S3BDH0\|A0A1S3BDH0_CUCME	1.2e-50	89.38	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|V7C5Q7\|V7C5Q7_PHAVU	1.2e-42	75.23	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G043000g PE=4 ...	[more]
tr\|I1JED8\|I1JED8_SOYBN	1.3e-41	75.23	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G116100 PE=4 SV=1	[more]
tr\|C6TG21\|C6TG21_SOYBN	1.3e-41	75.23	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012946	X8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09269-RA	Carg09269-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 21..106 e-value: 4.2E-41 score: 152.5
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 22..92 e-value: 3.3E-21 score: 75.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..151
None	No IPR available	PANTHER	PTHR32227	FAMILY NOT NAMED	coord: 21..150
None	No IPR available	PANTHER	PTHR32227:SF118	CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN	coord: 21..150

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg09269	Cla022023	Watermelon (97103) v1	carwmB0134
Carg09269	Csa6G366460	Cucumber (Chinese Long) v2	carcuB0158
Carg09269	MELO3C011423	Melon (DHL92) v3.5.1	carmeB0142
Carg09269	ClCG08G010380	Watermelon (Charleston Gray)	carwcgB0138
Carg09269	CSPI06G19640	Wild cucumber (PI 183967)	carcpiB0163
Carg09269	Cucsa.327840	Cucumber (Gy14) v1	carcgyB0175
Carg09269	CmaCh12G000990	Cucurbita maxima (Rimu)	carcmaB0185
Carg09269	CmoCh12G000780	Cucurbita moschata (Rifu)	carcmoB0194
Carg09269	CmoCh05G004700	Cucurbita moschata (Rifu)	carcmoB0196
Carg09269	Lsi08G008940	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09269	Cp4.1LG07g00850	Cucurbita pepo (Zucchini)	carcpeB0207
Carg09269	Cp4.1LG11g03880	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09269	CsGy6G019200	Cucumber (Gy14) v2	carcgybB0156
Carg09269	MELO3C011423.2	Melon (DHL92) v3.6.1	carmedB0146
Carg09269	CsaV3_6G033650	Cucumber (Chinese Long) v3	carcucB0166
Carg09269	Cla97C08G153240	Watermelon (97103) v2	carwmbB0150
Carg09269	Bhi04G000905	Wax gourd	carwgoB0177

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg09269	Carg20589	Silver-seed gourd	carcarB164

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09269	Cucurbita maxima (Rimu)	carcmaB0189