Carg20146 (gene) Silver-seed gourd

Overview
NameCarg20146
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionChromatin structure-remodeling complex protein SYD
LocationCucurbita_argyrosperma_scaffold_168 : 372164 .. 373453 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGATGGGCAGTTTCACATCTGGGCCCAAACCGACGACGTTTCAGTAAATGGGCCGAAACCCGATTATTTTCTCACGTGGGAAGCGTGTTTGGAAGACCATTTCCTTAATGCAGGTGGAAAACACAGTTCCATCGTCCTGTCGAGGGCTTGGCAATTTCTTCAGAATCTAAAACCAGAGTTCTCCATGTAGTTCATCATCAGCTTACAATTTCTTCGCGGATCTCGTATCAGGTGTTGTATGCGTTTTCTTCATCAGTCATCTACGGAATTTCTGTACTCTTTCAAATTCATTTCCTGATTTGGAAGTCACTGCACATTTGACAGAACACAATTTTCTTCTTCGTGCTGTTTTCCTGACTAGAAATTTTCTGAATTATAGCGTTGTTTTAGCTCATATGTCTATTTTCCATGCTTTAAATTATCTATAGTATTTGTAGGATTCATTGCCACTGGTGAAACTTAAGCTGGATATGTTTAGGTGGATTGTAGTTTACTTGTAGTTATAGTATTATAGGTGCTGTTATCGGAAATGTTTGATGCATTTGTCTTCCATGGTTTTTTAGAGGATGCAATTGTTTGCTTCAGGTGAAACTTTAGCTGGATAGATACAGAGCGTTCATTTCCCTTTTGGTTTACCAGTGAACTATATTTATTCTTGAATCACTTTGTTCTGTTTAGTGCCTATTTATTTAAGTTAAGTTTGTATTTTATATATTGCTGGACTTATCAAAATTTCACATTTTAGGTTGCTATCTTAGACAAGATGGCATCTTCACAAAATGTTGAGCTGGAAGCTGCGAAGTTTCTGCACAAACTCATTCAAGAATCTAGAGACGAGCCAGCAAAATTGGCTACAAAACTCTACGTGGTGTGTTAAGCATCGTTTACTTTTATTTTGTCTGCTCAATTAATGGCACGGGGAATTTTCATATTTATGATTTCATGCTTGTGTGAGTTTCAGATATTGCAACACATGAAATCAAGTGGGAAAGAACATTCAATGCCGTATCAAGTAATTTCGAGGTAAAAAACCACCGTTCCATACTTCAGTAACCATTTTTCCTTACAATTGTTGTATCTTCTATTGGTTGTATTTTTCCACTATCAAACTTTCATGTGCCCTGATTCGGCTTTAAGACTAGCCAATCCAAAGCGATCAACCCAAGGCATAGACTTGTCGTGGAAAGTCCTTTTCTTTCCGACCATATTTCAGATAGGAGAGCTTTCATTGCATTTGACCACAATATCTTAGATTTTGGCGCCAAGGGAGGGCCAACTAGCTAA

mRNA sequence

ATGTCGGGATGGGCAGTTTCACATCTGGGCCCAAACCGACGACGTTTCAGTAAATGGGCCGAAACCCGATTATTTTCTCACGTGGGAAGCGTGTGGAAAACACAGTTCCATCGTCCTGTCGAGGGCTTGGCAATTTCTTCAGAATCTAAAACCAGAGTTCTCCATGTAGTTCATCATCAGCTTACAATTTCTTCGCGGATCTCGTATCAGGTTGCTATCTTAGACAAGATGGCATCTTCACAAAATGTTGAGCTGGAAGCTGCGAAGTTTCTGCACAAACTCATTCAAGAATCTAGAGACGAGCCAGCAAAATTGGCTACAAAACTCTACGTGATATTGCAACACATGAAATCAAGTGGGAAAGAACATTCAATGCCGTATCAAACTAGCCAATCCAAAGCGATCAACCCAAGGCATAGACTTGTCGTGGAAAGTCCTTTTCTTTCCGACCATATTTCAGATAGGAGAGCTTTCATTGCATTTGACCACAATATCTTAGATTTTGGCGCCAAGGGAGGGCCAACTAGCTAA

Coding sequence (CDS)

ATGTCGGGATGGGCAGTTTCACATCTGGGCCCAAACCGACGACGTTTCAGTAAATGGGCCGAAACCCGATTATTTTCTCACGTGGGAAGCGTGTGGAAAACACAGTTCCATCGTCCTGTCGAGGGCTTGGCAATTTCTTCAGAATCTAAAACCAGAGTTCTCCATGTAGTTCATCATCAGCTTACAATTTCTTCGCGGATCTCGTATCAGGTTGCTATCTTAGACAAGATGGCATCTTCACAAAATGTTGAGCTGGAAGCTGCGAAGTTTCTGCACAAACTCATTCAAGAATCTAGAGACGAGCCAGCAAAATTGGCTACAAAACTCTACGTGATATTGCAACACATGAAATCAAGTGGGAAAGAACATTCAATGCCGTATCAAACTAGCCAATCCAAAGCGATCAACCCAAGGCATAGACTTGTCGTGGAAAGTCCTTTTCTTTCCGACCATATTTCAGATAGGAGAGCTTTCATTGCATTTGACCACAATATCTTAGATTTTGGCGCCAAGGGAGGGCCAACTAGCTAA

Protein sequence

MSGWAVSHLGPNRRRFSKWAETRLFSHVGSVWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQTSQSKAINPRHRLVVESPFLSDHISDRRAFIAFDHNILDFGAKGGPTS
Homology
[Close]
BLAST of Carg20146 vs. NCBI nr
Match: KGN57062.1 (hypothetical protein Csa_3G151390 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 76/127 (59.84%), Postives = 88/127 (69.29%), Query Frame = 0 

Query: 30  SVWKTQFHRPVEGLAISSE--------SKTRVLHVVHHQLTISSRISYQ-VAILDKMASS 89
           S W+TQ HR +EGL ISSE        S +     V     +  R  +  VAILDKMA+S
Sbjct: 23  SRWQTQLHR-LEGLVISSESNKSSPCSSSSAPNFFVDLVSGVVCRFFFSGVAILDKMAAS 82

Query: 90  QNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPR 146
           QNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + +  +
Sbjct: 83  QNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQ 142

[Close]
BLAST of Carg20146 vs. NCBI nr
Match: XP_020976186.1 (LOW QUALITY PROTEIN: chromatin structure-remodeling complex protein SYD, partial [Arachis ipaensis])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 74  LDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQ 133
           +++MASSQNVELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMKSSGKEHSMPYQ  +  
Sbjct: 48  INEMASSQNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRA 107

Query: 134 SKAINPRHRLVVES 146
            + +  +H L +E+
Sbjct: 108 METVINQHNLDIEA 121

[Close]
BLAST of Carg20146 vs. NCBI nr
Match: XP_015958745.2 (chromatin structure-remodeling complex protein SYD, partial [Arachis duranensis])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 74  LDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQ 133
           +++MASSQNVELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMKSSGKEHSMPYQ  +  
Sbjct: 48  INEMASSQNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRA 107

Query: 134 SKAINPRHRLVVES 146
            + +  +H L +E+
Sbjct: 108 METVINQHNLDIEA 121

[Close]
BLAST of Carg20146 vs. NCBI nr
Match: XP_022955379.1 (chromatin structure-remodeling complex protein SYD-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 77  MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKA 136
           MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + 
Sbjct: 1   MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60

Query: 137 INPRHRLVVES 146
           +  +H L +E+
Sbjct: 61  VINQHGLDIEA 71

[Close]
BLAST of Carg20146 vs. NCBI nr
Match: XP_022955378.1 (chromatin structure-remodeling complex protein SYD-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 77  MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKA 136
           MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + 
Sbjct: 1   MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60

Query: 137 INPRHRLVVES 146
           +  +H L +E+
Sbjct: 61  VINQHGLDIEA 71

[Close]
BLAST of Carg20146 vs. TAIR10
Match: AT2G28290.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-18
Identity = 43/51 (84.31%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 78  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ 129
           +SS N+ELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMK+SGKE++MPYQ
Sbjct: 3   SSSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQ 53

[Close]
BLAST of Carg20146 vs. Swiss-Prot
Match: sp|F4IHS2|SYD_ARATH (Chromatin structure-remodeling complex protein SYD OS=Arabidopsis thaliana OX=3702 GN=SYD PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-17
Identity = 43/51 (84.31%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 78  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ 129
           +SS N+ELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMK+SGKE++MPYQ
Sbjct: 3   SSSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQ 53

[Close]
BLAST of Carg20146 vs. TrEMBL
Match: tr|A0A0A0L8X3|A0A0A0L8X3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G151390 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 76/127 (59.84%), Postives = 88/127 (69.29%), Query Frame = 0 

Query: 30  SVWKTQFHRPVEGLAISSE--------SKTRVLHVVHHQLTISSRISYQ-VAILDKMASS 89
           S W+TQ HR +EGL ISSE        S +     V     +  R  +  VAILDKMA+S
Sbjct: 23  SRWQTQLHR-LEGLVISSESNKSSPCSSSSAPNFFVDLVSGVVCRFFFSGVAILDKMAAS 82

Query: 90  QNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPR 146
           QNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + +  +
Sbjct: 83  QNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQ 142

[Close]
BLAST of Carg20146 vs. TrEMBL
Match: tr|A0A1S3AWW0|A0A1S3AWW0_CUCME (chromatin structure-remodeling complex protein SYD isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483787 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 77  MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKA 136
           MA+SQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + 
Sbjct: 1   MAASQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60

Query: 137 INPRHRLVVES 146
           +  +H L +E+
Sbjct: 61  VINQHGLDIEA 71

[Close]
BLAST of Carg20146 vs. TrEMBL
Match: tr|A0A1S3AXY3|A0A1S3AXY3_CUCME (chromatin structure-remodeling complex protein SYD isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483787 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 77  MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKA 136
           MA+SQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + 
Sbjct: 1   MAASQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60

Query: 137 INPRHRLVVES 146
           +  +H L +E+
Sbjct: 61  VINQHGLDIEA 71

[Close]
BLAST of Carg20146 vs. TrEMBL
Match: tr|A0A1S3AXW6|A0A1S3AXW6_CUCME (chromatin structure-remodeling complex protein SYD isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483787 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 77  MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKA 136
           MA+SQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + 
Sbjct: 1   MAASQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60

Query: 137 INPRHRLVVES 146
           +  +H L +E+
Sbjct: 61  VINQHGLDIEA 71

[Close]
BLAST of Carg20146 vs. TrEMBL
Match: tr|V7CA49|V7CA49_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G100200g PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.9e-18
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 77  MASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKA 136
           MASSQNVELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + 
Sbjct: 1   MASSQNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMET 60

Query: 137 INPRHRLVVES 146
           +  +H L +E+
Sbjct: 61  VISQHGLDIEA 71

The following BLAST results are available for this feature:
BLAST of Carg20146 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57062.11.6e-2359.84hypothetical protein Csa_3G151390 [Cucumis sativus][more]
XP_020976186.11.6e-1871.62LOW QUALITY PROTEIN: chromatin structure-remodeling complex protein SYD, partial... [more]
XP_015958745.21.6e-1871.62chromatin structure-remodeling complex protein SYD, partial [Arachis duranensis][more]
XP_022955379.11.6e-1877.46chromatin structure-remodeling complex protein SYD-like isoform X3 [Cucurbita mo... [more]
XP_022955378.11.6e-1877.46chromatin structure-remodeling complex protein SYD-like isoform X2 [Cucurbita mo... [more]
BLAST of Carg20146 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28290.11.9e-1884.31P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
BLAST of Carg20146 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4IHS2|SYD_ARATH3.4e-1784.31Chromatin structure-remodeling complex protein SYD OS=Arabidopsis thaliana OX=37... [more]
BLAST of Carg20146 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L8X3|A0A0A0L8X3_CUCSA1.1e-2359.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G151390 PE=4 SV=1[more]
tr|A0A1S3AWW0|A0A1S3AWW0_CUCME2.3e-1876.06chromatin structure-remodeling complex protein SYD isoform X1 OS=Cucumis melo OX... [more]
tr|A0A1S3AXY3|A0A1S3AXY3_CUCME2.3e-1876.06chromatin structure-remodeling complex protein SYD isoform X3 OS=Cucumis melo OX... [more]
tr|A0A1S3AXW6|A0A1S3AXW6_CUCME2.3e-1876.06chromatin structure-remodeling complex protein SYD isoform X2 OS=Cucumis melo OX... [more]
tr|V7CA49|V7CA49_PHAVU3.9e-1874.65Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G100200g PE=4 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0042393 histone binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20146-RACarg20146-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg20146CmaCh06G014580Cucurbita maxima (Rimu)carcmaB1155
Carg20146Cla97C05G087160Watermelon (97103) v2carwmbB0867
Carg20146Bhi01G000669Wax gourdcarwgoB0972
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg20146Carg17376Silver-seed gourdcarcarB544
The following block(s) are covering this gene:
GeneOrganismBlock
Carg20146Silver-seed gourdcarcarB087
Carg20146Cucumber (Gy14) v2carcgybB0828
Carg20146Cucumber (Gy14) v1carcgyB0960
Carg20146Cucurbita maxima (Rimu)carcmaB1153
Carg20146Cucurbita maxima (Rimu)carcmaB1154
Carg20146Cucurbita maxima (Rimu)carcmaB1156
Carg20146Cucurbita moschata (Rifu)carcmoB1123
Carg20146Cucurbita moschata (Rifu)carcmoB1124
Carg20146Cucurbita moschata (Rifu)carcmoB1125
Carg20146Cucurbita moschata (Rifu)carcmoB1126
Carg20146Cucurbita pepo (Zucchini)carcpeB1163
Carg20146Cucurbita pepo (Zucchini)carcpeB1164
Carg20146Cucurbita pepo (Zucchini)carcpeB1165
Carg20146Wild cucumber (PI 183967)carcpiB0874
Carg20146Cucumber (Chinese Long) v2carcuB0854
Carg20146Cucumber (Chinese Long) v3carcucB0878
Carg20146Bottle gourd (USVL1VR-Ls)carlsiB761
Carg20146Bottle gourd (USVL1VR-Ls)carlsiB760
Carg20146Melon (DHL92) v3.5.1carmeB0827
Carg20146Melon (DHL92) v3.5.1carmeB0828
Carg20146Melon (DHL92) v3.6.1carmedB0839
Carg20146Melon (DHL92) v3.6.1carmedB0840
Carg20146Watermelon (Charleston Gray)carwcgB0807
Carg20146Watermelon (Charleston Gray)carwcgB0808
Carg20146Watermelon (97103) v1carwmB0834
Carg20146Watermelon (97103) v1carwmB0835
Carg20146Watermelon (97103) v2carwmbB0868
Carg20146Wax gourdcarwgoB0970