Carg20141 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20141
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_168 : 349341 .. 349562 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGGATGACTGATGTAAAACAATCGCTCTTCCTTGGAAAACAGATGGATAGTGATTCCTTAACATCTGCATGGAAATCTGACCGTAATCTGGCCATATTCTCATCTGGGAAATGTCTCCCTGCTGGTGGTGCCTCAACTAAGTTTGTTACTGGCAGCAGTGTTGCATGGCAACAAATTGCTCCAGTTGAATTGACACAAAAGAAACTATCTACCTAG

mRNA sequence

ATGATCAGGATGACTGATGTAAAACAATCGCTCTTCCTTGGAAAACAGATGGATAGTGATTCCTTAACATCTGCATGGAAATCTGACCGTAATCTGGCCATATTCTCATCTGGGAAATGTCTCCCTGCTGGTGGTGCCTCAACTAAGTTTGTTACTGGCAGCAGTGTTGCATGGCAACAAATTGCTCCAGTTGAATTGACACAAAAGAAACTATCTACCTAG

Coding sequence (CDS)

ATGATCAGGATGACTGATGTAAAACAATCGCTCTTCCTTGGAAAACAGATGGATAGTGATTCCTTAACATCTGCATGGAAATCTGACCGTAATCTGGCCATATTCTCATCTGGGAAATGTCTCCCTGCTGGTGGTGCCTCAACTAAGTTTGTTACTGGCAGCAGTGTTGCATGGCAACAAATTGCTCCAGTTGAATTGACACAAAAGAAACTATCTACCTAG

Protein sequence

MIRMTDVKQSLFLGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELTQKKLST

Homology

[Close]

BLAST of Carg20141 vs. NCBI nr
Match: XP_022955384.1 (uncharacterized protein LOC111457430 isoform X1 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 8   KQSLFLGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT 67
           + S  +GK+MDS SLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT
Sbjct: 297 QSSDIIGKKMDSHSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT 356

Query: 68  QKKLST 74
           QKKLST
Sbjct: 357 QKKLST 362

[Close]

BLAST of Carg20141 vs. NCBI nr
Match: XP_022955385.1 (uncharacterized protein LOC111457430 isoform X2 [Cucurbita moschata] >XP_022955386.1 uncharacterized protein LOC111457430 isoform X2 [Cucurbita moschata])

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 8   KQSLFLGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT 67
           + S  +GK+MDS SLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT
Sbjct: 290 QSSDIIGKKMDSHSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT 349

Query: 68  QKKLST 74
           QKKLST
Sbjct: 350 QKKLST 355

[Close]

BLAST of Carg20141 vs. NCBI nr
Match: XP_023528789.1 (uncharacterized protein LOC111791619 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 8   KQSLFLGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT 67
           + S  +GK+MDS SLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAW QIAPVELT
Sbjct: 293 QSSDIIGKKMDSHSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWPQIAPVELT 352

Query: 68  QKKLST 74
           QKKLST
Sbjct: 353 QKKLST 358

[Close]

BLAST of Carg20141 vs. NCBI nr
Match: XP_023528790.1 (uncharacterized protein LOC111791619 isoform X4 [Cucurbita pepo subsp. pepo] >XP_023528791.1 uncharacterized protein LOC111791619 isoform X5 [Cucurbita pepo subsp. pepo] >XP_023528792.1 uncharacterized protein LOC111791619 isoform X6 [Cucurbita pepo subsp. pepo] >XP_023528794.1 uncharacterized protein LOC111791619 isoform X4 [Cucurbita pepo subsp. pepo] >XP_023528795.1 uncharacterized protein LOC111791619 isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 8   KQSLFLGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT 67
           + S  +GK+MDS SLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAW QIAPVELT
Sbjct: 289 QSSDIIGKKMDSHSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWPQIAPVELT 348

Query: 68  QKKLST 74
           QKKLST
Sbjct: 349 QKKLST 354

[Close]

BLAST of Carg20141 vs. NCBI nr
Match: XP_023528787.1 (uncharacterized protein LOC111791619 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023528788.1 uncharacterized protein LOC111791619 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 8   KQSLFLGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELT 67
           + S  +GK+MDS SLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAW QIAPVELT
Sbjct: 296 QSSDIIGKKMDSHSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWPQIAPVELT 355

Query: 68  QKKLST 74
           QKKLST
Sbjct: 356 QKKLST 361

[Close]

BLAST of Carg20141 vs. TrEMBL
Match: tr|A0A1S3AWW9|A0A1S3AWW9_CUCME (uncharacterized protein LOC103483792 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483792 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 13  LGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELTQKK 71
           +G +MD+ SLTSAWKSD NLA+FSSGKCLPAGGAS KFV GSSVAW QIAPVELTQKK
Sbjct: 298 IGNKMDNQSLTSAWKSDHNLAVFSSGKCLPAGGASNKFVIGSSVAWPQIAPVELTQKK 355

[Close]

BLAST of Carg20141 vs. TrEMBL
Match: tr|A0A1S3AXZ3|A0A1S3AXZ3_CUCME (uncharacterized protein LOC103483792 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483792 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 13  LGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELTQKK 71
           +G +MD+ SLTSAWKSD NLA+FSSGKCLPAGGAS KFV GSSVAW QIAPVELTQKK
Sbjct: 294 IGNKMDNQSLTSAWKSDHNLAVFSSGKCLPAGGASNKFVIGSSVAWPQIAPVELTQKK 351

[Close]

BLAST of Carg20141 vs. TrEMBL
Match: tr|A0A1S3AX95|A0A1S3AX95_CUCME (uncharacterized protein LOC103483792 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483792 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 13  LGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELTQKK 71
           +G +MD+ SLTSAWKSD NLA+FSSGKCLPAGGAS KFV GSSVAW QIAPVELTQKK
Sbjct: 297 IGNKMDNQSLTSAWKSDHNLAVFSSGKCLPAGGASNKFVIGSSVAWPQIAPVELTQKK 354

[Close]

BLAST of Carg20141 vs. TrEMBL
Match: tr|A0A0A0L549|A0A0A0L549_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G151420 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 13  LGKQMDSDSLTSAWKSDRNLAIFSSGKCLPAGGASTKFVTGSSVAWQQIAPVELTQKK 71
           +GK+MD+ SLTSAWKSD NLA+FSSGKCLPAGGAS KFV GSSVAW QIAPVEL QKK
Sbjct: 297 IGKKMDNQSLTSAWKSDHNLAVFSSGKCLPAGGASNKFVIGSSVAWPQIAPVELAQKK 354

The following BLAST results are available for this feature:

BLAST of Carg20141 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955384.1	2.5e-23	89.39	uncharacterized protein LOC111457430 isoform X1 [Cucurbita moschata]	[more]
XP_022955385.1	2.5e-23	89.39	uncharacterized protein LOC111457430 isoform X2 [Cucurbita moschata] >XP_0229553...	[more]
XP_023528789.1	1.3e-22	87.88	uncharacterized protein LOC111791619 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023528790.1	1.3e-22	87.88	uncharacterized protein LOC111791619 isoform X4 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023528787.1	1.3e-22	87.88	uncharacterized protein LOC111791619 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Carg20141 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg20141 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20141 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWW9\|A0A1S3AWW9_CUCME	1.6e-18	82.76	uncharacterized protein LOC103483792 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3AXZ3\|A0A1S3AXZ3_CUCME	1.6e-18	82.76	uncharacterized protein LOC103483792 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3AX95\|A0A1S3AX95_CUCME	1.6e-18	82.76	uncharacterized protein LOC103483792 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L549\|A0A0A0L549_CUCSA	1.6e-18	82.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G151420 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20141-RA	Carg20141-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20141	Csa3G151420	Cucumber (Chinese Long) v2	carcuB0854
Carg20141	CSPI03G13890	Wild cucumber (PI 183967)	carcpiB0874
Carg20141	Cucsa.253600	Cucumber (Gy14) v1	carcgyB0960
Carg20141	CmaCh14G016460	Cucurbita maxima (Rimu)	carcmaB1153
Carg20141	CmaCh06G014620	Cucurbita maxima (Rimu)	carcmaB1155
Carg20141	CmoCh06G014620	Cucurbita moschata (Rifu)	carcmoB1125
Carg20141	Lsi05G014980	Bottle gourd (USVL1VR-Ls)	carlsiB761
Carg20141	Cp4.1LG08g04580	Cucurbita pepo (Zucchini)	carcpeB1165
Carg20141	Cp4.1LG03g11250	Cucurbita pepo (Zucchini)	carcpeB1164
Carg20141	CsGy3G014010	Cucumber (Gy14) v2	carcgybB0828
Carg20141	MELO3C031713.2	Melon (DHL92) v3.6.1	carmedB0840
Carg20141	CsaV3_3G014100	Cucumber (Chinese Long) v3	carcucB0878
Carg20141	Cla97C05G087190	Watermelon (97103) v2	carwmbB0867
Carg20141	Bhi01G000673	Wax gourd	carwgoB0972

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20141	Carg17373	Silver-seed gourd	carcarB544

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20141	Bottle gourd (USVL1VR-Ls)	carlsiB760
Carg20141	Melon (DHL92) v3.5.1	carmeB0827
Carg20141	Melon (DHL92) v3.5.1	carmeB0828
Carg20141	Melon (DHL92) v3.6.1	carmedB0839
Carg20141	Watermelon (Charleston Gray)	carwcgB0807
Carg20141	Watermelon (Charleston Gray)	carwcgB0808
Carg20141	Watermelon (97103) v1	carwmB0834
Carg20141	Watermelon (97103) v1	carwmB0835
Carg20141	Watermelon (97103) v2	carwmbB0868
Carg20141	Wax gourd	carwgoB0970
Carg20141	Silver-seed gourd	carcarB087
Carg20141	Cucurbita maxima (Rimu)	carcmaB1154
Carg20141	Cucurbita maxima (Rimu)	carcmaB1156
Carg20141	Cucurbita moschata (Rifu)	carcmoB1123
Carg20141	Cucurbita moschata (Rifu)	carcmoB1124
Carg20141	Cucurbita moschata (Rifu)	carcmoB1126
Carg20141	Cucurbita pepo (Zucchini)	carcpeB1163