Carg19731 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19731
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_133 : 380085 .. 381295 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAGTTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGTAATGGTCAAGAACTTTGGAAGAGGCCTATTTTTTTTGTACTAATTTTTAATTATACTCCTCAACGTTTACAAATATCATTTTTAAAACTTTAAATTAACGTAACTTTTTTGTTAAATGAAGATGAAAAAACAACGTGACAATGACCTATAAAATAATGGTACACGTTGACGTAATAAAGGTGACATGTTTTAATTATATCATTAAACTTTAAGATATGTTTCAATTATATCCTTAATGTTTCTAATTTTCATTTTAACCCTAAGTTATCGTCACGTTGGAATGAACATTTTTCGTTGCTGATCGTATCTATTATTTTTCAGAGTGTGAGAGAGAAATAGAAAAAGAAAGAGATCCCGTTGAATCGAAATTTAAAAGCTCGAACAATATAATAACGAAAATGAACTTCAATCTTACAAACCGACACAAATATTGAAAACACACAACAATTGTGATAATAATAAAACCTTAAACTCCACACACAAACTACCCAACAAGAATCATGGCTGCAAATAACCAACCAAGCTTAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGACGGAGTAGTTTGTAAGAGATGGCGGGCAGCTTGGCCGATGTCGATACTTGAAAGAGCCAAAGTAGCCATGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGGTAAGTGGTGATATATGGAAGGCATCATGA

mRNA sequence

ATGGGGAAGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAGTTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGACGGAGTAGTTTGTAAGAGATGGCGGGCAGCTTGGCCGATGTCGATACTTGAAAGAGCCAAAGTAGCCATGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGGTAAGTGGTGATATATGGAAGGCATCATGA

Coding sequence (CDS)

ATGGGGAAGAAGAAGTTGCAGGTGGAGGAGATAGTAGGGAATGAAGGCAAGTTTGGAAGCGCCATTGTTGGAAGCGGAGGTAGCCCGACCCCAGTCGGGATGTTCACCGGGAAGCTCGGAAGCGGAGGGAGATTAACCCTAGGCAATGTGGGTTGTGGCATATTCGGAAGAGTAGGGTTTGGCAAGGCAGGCAACGACGGCAACCCTATTGGAACCACTGGCAAGTTCGGTAGCGTGGGCGAACCAGTTTATAAAAGATGGTGGGCAGCTCGACCGACGTCGATGCTTGAAAGCGTCAAAGCAACAATGAAGGGGGAAGAAGAAGCTGCAGGCGGAGGAGACAAAAATGGGATGGAAGGAAATGAAGCTGGAATGGTAGGGATCGACGCCATTGTCGGGAGCGGGGGGAGTGCAGCCCCGCTCGGGATGTTAACCGGGAAGCTCGGAAAAGGCAATGTGGGTTGTGGTAGATTTGGAAGAGCAGGCAATGGAGGTATCCCCGTTGGAACGACGGGCAAGTTCGGCACCAAGGACGGAGTAGTTTGTAAGAGATGGCGGGCAGCTTGGCCGATGTCGATACTTGAAAGAGCCAAAGTAGCCATGAAGACAACGATCAAGAACTTGGAAGAAGCCATTGAGATGGTTTTGAAGGTAAGTGGTGATATATGGAAGGCATCATGA

Protein sequence

MGKKKLQVEEIVGNEGKFGSAIVGSGGSPTPVGMFTGKLGSGGRLTLGNVGCGIFGRVGFGKAGNDGNPIGTTGKFGSVGEPVYKRWWAARPTSMLESVKATMKGEEEAAGGGDKNGMEGNEAGMVGIDAIVGSGGSAAPLGMLTGKLGKGNVGCGRFGRAGNGGIPVGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAIEMVLKVSGDIWKAS

Homology

[Close]

BLAST of Carg19731 vs. NCBI nr
Match: KGN54594.1 (hypothetical protein Csa_4G374620 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 64/105 (60.95%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 118 MEGNEAGMVGID-----AIVGSGGSAAPLGMLTGKLGKGNVGC-----GRFGRAGNGGIP 177
           MEGNE GMVGID      IVGSGG+A+P+G   GKL  GNVGC             GGI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNASPIGS-GGKLIFGNVGCXXXXXXXXXXXXXGGIR 60

Query: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAI 213
           VG  G+FGTK GVVC+RWRAAWP  +LERAKVA+K  IKNLE AI
Sbjct: 61  VGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

[Close]

BLAST of Carg19731 vs. NCBI nr
Match: KGN54598.1 (hypothetical protein Csa_4G375140 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 7.1e-16
Identity = 58/102 (56.86%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 118 MEGNEAGMVGID-----AIVGSGGSAAPLGMLTGKLGKGNVGCG-----RFGRAGNGGIP 177
           MEGNE GMVGID      IVGSGG+ +P+    GKL  GNVGCG             GI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNGSPIES-GGKLTFGNVGCGXXXXXXXXXXXXXGIR 60

Query: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLE 210
           VG  G+FGTK GVVC+RWR AWP  +LERAKVA+K  IKN E
Sbjct: 61  VGIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVKAMIKNFE 101

[Close]

BLAST of Carg19731 vs. NCBI nr
Match: KGN54596.1 (hypothetical protein Csa_4G374640 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 55/104 (52.88%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 118 MEGNEAGMVGIDAIVGS----GGSAAPLGMLTGKLGKGNVGC-----GRFGRAGNGGIPV 177
           MEGNE GMVGI    GS                KL  GNVGC             GGI V
Sbjct: 1   MEGNEIGMVGIGGNFGSVIVXXXXXXXXXXXXXKLIFGNVGCXXXXXXXXXXXXXGGIRV 60

Query: 178 GTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAI 213
           G  G+FGTK GVVC+RWRAAWP  +LERAKVA+K  IKNLE AI
Sbjct: 61  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

[Close]

BLAST of Carg19731 vs. NCBI nr
Match: XP_016901486.1 (PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 55/134 (41.04%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 107 EEAAGGGDKNGMEGNEAGMVGIDA--------IVGSGGSAAPLGMLTGKLGK------GN 166
           EE AGGG+KNG   ++  +VGID         +VG GG+A  +GM  G+LG       G 
Sbjct: 20  EEVAGGGEKNG--SDDGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGR 79

Query: 167 VGCGRFGRAGNGGIPV------------GTTGKFGTKDGVVCKRWRAAWPMSILERAKVA 215
            G G+FG  G  G PV            G+ G  G K G+VC+R R     S LE AKV 
Sbjct: 80  EGSGKFGMDGILG-PVXXXXXXXXADGLGSDG-IGGKFGIVCRRCREVRAASTLENAKVT 139

[Close]

BLAST of Carg19731 vs. NCBI nr
Match: XP_020533987.1 (RNA-binding protein 12 [Jatropha curcas])

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-04
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 110 AGGGDKNGMEGNEAGMVGIDAIVGSGGSAAPLGMLTGK----------LGK-GNVGCGRF 169
           AGGG+KNG+EG   G+VGI+  +G+GG                     LGK GNVGCGR 
Sbjct: 123 AGGGEKNGIEGIVVGIVGIEGKLGNGGXXXXXXXXXXXXXXXXXXXXGLGKFGNVGCGRV 182

Query: 170 GRAGNGGIPVGTTGKFGTK-DGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAI 213
           G  G      G  G+FG + +G  C+R RAA   S+LE  K   +  +K L+E +
Sbjct: 183 GILG------GIDGEFGIEGNGGNCRRLRAATLTSMLENDKAIKRARMKQLKEVM 231

[Close]

BLAST of Carg19731 vs. TrEMBL
Match: tr|A0A0A0L0M4|A0A0A0L0M4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374620 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.8e-19
Identity = 64/105 (60.95%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 118 MEGNEAGMVGID-----AIVGSGGSAAPLGMLTGKLGKGNVGC-----GRFGRAGNGGIP 177
           MEGNE GMVGID      IVGSGG+A+P+G   GKL  GNVGC             GGI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNASPIGS-GGKLIFGNVGCXXXXXXXXXXXXXGGIR 60

Query: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAI 213
           VG  G+FGTK GVVC+RWRAAWP  +LERAKVA+K  IKNLE AI
Sbjct: 61  VGIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

[Close]

BLAST of Carg19731 vs. TrEMBL
Match: tr|A0A0A0KYM4|A0A0A0KYM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G375140 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.7e-16
Identity = 58/102 (56.86%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 118 MEGNEAGMVGID-----AIVGSGGSAAPLGMLTGKLGKGNVGCG-----RFGRAGNGGIP 177
           MEGNE GMVGID      IVGSGG+ +P+    GKL  GNVGCG             GI 
Sbjct: 1   MEGNEIGMVGIDGKFGSVIVGSGGNGSPIES-GGKLTFGNVGCGXXXXXXXXXXXXXGIR 60

Query: 178 VGTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLE 210
           VG  G+FGTK GVVC+RWR AWP  +LERAKVA+K  IKN E
Sbjct: 61  VGIAGRFGTKGGVVCQRWRVAWPKLMLERAKVAVKAMIKNFE 101

[Close]

BLAST of Carg19731 vs. TrEMBL
Match: tr|A0A0A0L399|A0A0A0L399_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374640 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 55/104 (52.88%), Postives = 59/104 (56.73%), Query Frame = 0


Query: 118 MEGNEAGMVGIDAIVGS----GGSAAPLGMLTGKLGKGNVGC-----GRFGRAGNGGIPV 177
           MEGNE GMVGI    GS                KL  GNVGC             GGI V
Sbjct: 1   MEGNEIGMVGIGGNFGSVIVXXXXXXXXXXXXXKLIFGNVGCXXXXXXXXXXXXXGGIRV 60

Query: 178 GTTGKFGTKDGVVCKRWRAAWPMSILERAKVAMKTTIKNLEEAI 213
           G  G+FGTK GVVC+RWRAAWP  +LERAKVA+K  IKNLE AI
Sbjct: 61  GIAGRFGTKGGVVCERWRAAWPKLMLERAKVAVKAMIKNLEVAI 104

[Close]

BLAST of Carg19731 vs. TrEMBL
Match: tr|A0A1S4DZT7|A0A1S4DZT7_CUCME (uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC107991270 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.9e-07
Identity = 55/134 (41.04%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 107 EEAAGGGDKNGMEGNEAGMVGIDA--------IVGSGGSAAPLGMLTGKLGK------GN 166
           EE AGGG+KNG   ++  +VGID         +VG GG+A  +GM  G+LG       G 
Sbjct: 20  EEVAGGGEKNG--SDDGSVVGIDGRDGKFGSEVVGRGGNATLVGMFMGRLGSGGSVSLGR 79

Query: 167 VGCGRFGRAGNGGIPV------------GTTGKFGTKDGVVCKRWRAAWPMSILERAKVA 215
            G G+FG  G  G PV            G+ G  G K G+VC+R R     S LE AKV 
Sbjct: 80  EGSGKFGMDGILG-PVXXXXXXXXADGLGSDG-IGGKFGIVCRRCREVRAASTLENAKVT 139

The following BLAST results are available for this feature:

BLAST of Carg19731 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54594.1	1.2e-18	60.95	hypothetical protein Csa_4G374620 [Cucumis sativus]	[more]
KGN54598.1	7.1e-16	56.86	hypothetical protein Csa_4G375140 [Cucumis sativus]	[more]
KGN54596.1	1.6e-12	52.88	hypothetical protein Csa_4G374640 [Cucumis sativus]	[more]
XP_016901486.1	1.3e-06	41.04	PREDICTED: uncharacterized PE-PGRS family protein PE_PGRS33, partial [Cucumis me...	[more]
XP_020533987.1	4.8e-04	39.13	RNA-binding protein 12 [Jatropha curcas]	[more]

BLAST of Carg19731 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19731 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19731 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0M4\|A0A0A0L0M4_CUCSA	7.8e-19	60.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374620 PE=4 SV=1	[more]
tr\|A0A0A0KYM4\|A0A0A0KYM4_CUCSA	4.7e-16	56.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G375140 PE=4 SV=1	[more]
tr\|A0A0A0L399\|A0A0A0L399_CUCSA	1.1e-12	52.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374640 PE=4 SV=1	[more]
tr\|A0A1S4DZT7\|A0A1S4DZT7_CUCME	8.9e-07	41.04	uncharacterized PE-PGRS family protein PE_PGRS33 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19731-RA	Carg19731-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 191..214

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19731	CmoCh16G002900	Cucurbita moschata (Rifu)	carcmoB0402
Carg19731	Bhi11G000863	Wax gourd	carwgoB0381

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19731	Silver-seed gourd	carcarB324
Carg19731	Cucurbita maxima (Rimu)	carcmaB0405
Carg19731	Cucurbita maxima (Rimu)	carcmaB0406
Carg19731	Cucurbita maxima (Rimu)	carcmaB0408
Carg19731	Cucurbita moschata (Rifu)	carcmoB0401
Carg19731	Cucurbita moschata (Rifu)	carcmoB0403
Carg19731	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19731	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19731	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19731	Bottle gourd (USVL1VR-Ls)	carlsiB269
Carg19731	Melon (DHL92) v3.6.1	carmedB0306
Carg19731	Watermelon (Charleston Gray)	carwcgB0287
Carg19731	Watermelon (97103) v1	carwmB0287
Carg19731	Watermelon (97103) v2	carwmbB0302