Carg19689 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19689
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pre-mRNA-splicing factor like
Location	Cucurbita_argyrosperma_scaffold_133 : 164784 .. 164993 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCAAAAGGGATGAGATGAAGAGAGGTGGTGGTGGGAACTACAGGGGAAGAGACAGGTTTAGTGAGAGGAAAGGATATCGAGCTGGTGGTAGTACCCGTGTGGAGAAACGGAAGCACGACCTATTTCACGAGGCTAATCGGAGTCCAACCCCGAAGAATGAAGAGGACCAAATTTCCAAGGTTGAAGCTCTTCTTGCTTCCTAG

mRNA sequence

ATGGCTACCAAAAGGGATGAGATGAAGAGAGGTGGTGGTGGGAACTACAGGGGAAGAGACAGGTTTAGTGAGAGGAAAGGATATCGAGCTGGTGGTAGTACCCGTGTGGAGAAACGGAAGCACGACCTATTTCACGAGGCTAATCGGAGTCCAACCCCGAAGAATGAAGAGGACCAAATTTCCAAGGTTGAAGCTCTTCTTGCTTCCTAG

Coding sequence (CDS)

ATGGCTACCAAAAGGGATGAGATGAAGAGAGGTGGTGGTGGGAACTACAGGGGAAGAGACAGGTTTAGTGAGAGGAAAGGATATCGAGCTGGTGGTAGTACCCGTGTGGAGAAACGGAAGCACGACCTATTTCACGAGGCTAATCGGAGTCCAACCCCGAAGAATGAAGAGGACCAAATTTCCAAGGTTGAAGCTCTTCTTGCTTCCTAG

Protein sequence

MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS

Homology

[Close]

BLAST of Carg19689 vs. NCBI nr
Match: XP_022942672.1 (pre-mRNA-splicing factor CWC25-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1   MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQI 60
           MA+KRDEMKRGGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEEDQI
Sbjct: 258 MASKRDEMKRGGGGNYRGRDRFGGRQGYPASGGTRVEKWKHDLFHEANRSPTPKNEEDQI 317

Query: 61  SKVEALLAS 70
           +KVEALLAS
Sbjct: 318 AKVEALLAS 326

[Close]

BLAST of Carg19689 vs. NCBI nr
Match: XP_022984554.1 (pre-mRNA-splicing factor CWC25 isoform X2 [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1   MATKRDEMKRGGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQI 60
           MA+KRDEMKRGGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEANRSPTPKNEE QI
Sbjct: 258 MASKRDEMKRGGGGNYRGRDRFGGRQGYPASGGTRVEKWKHDLFHEANRSPTPKNEEAQI 317

Query: 61  SKVEALLAS 70
           +KVEALLAS
Sbjct: 318 AKVEALLAS 326

[Close]

BLAST of Carg19689 vs. NCBI nr
Match: XP_022942670.1 (pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata] >XP_022942671.1 pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 60/81 (74.07%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEAN 60
           MA+KRDEMKR            GGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEAN
Sbjct: 258 MASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPASGGTRVEKWKHDLFHEAN 317

Query: 61  RSPTPKNEEDQISKVEALLAS 70
           RSPTPKNEEDQI+KVEALLAS
Sbjct: 318 RSPTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of Carg19689 vs. NCBI nr
Match: XP_023521659.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 60/81 (74.07%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEAN 60
           MA+KRDEMKR            GGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEAN
Sbjct: 258 MASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPASGGTRVEKWKHDLFHEAN 317

Query: 61  RSPTPKNEEDQISKVEALLAS 70
           RSPTPKNEEDQI+KVEALLAS
Sbjct: 318 RSPTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of Carg19689 vs. NCBI nr
Match: XP_023548006.1 (pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] >XP_023548014.1 pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 60/81 (74.07%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1   MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEAN 60
           MA+KRDEMKR            GGGGNYRGRDRF  R+GY A G TRVEK KHDLFHEAN
Sbjct: 258 MASKRDEMKRGGYSVRERYGNGGGGGNYRGRDRFGGRQGYPASGGTRVEKWKHDLFHEAN 317

Query: 61  RSPTPKNEEDQISKVEALLAS 70
           RSPTPKNEEDQI+KVEALLAS
Sbjct: 318 RSPTPKNEEDQIAKVEALLAS 338

[Close]

BLAST of Carg19689 vs. TAIR10
Match: AT3G19650.1 (cyclin-related)

HSP 1 Score: 46.6 bits (109), Expect = 7.2e-06
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 6   DEMKRGGGGNYRG-RDRF--SERKGYRAGGSTRVEKR-KHDLFHEANRSPTPKNEEDQIS 65
           DE   G   +Y+  RDRF  + R G+ +G  TR EK+  HDLF EAN+SP    EE+QI+
Sbjct: 236 DERGAGSRQSYQADRDRFNGNGRSGF-SGSWTRNEKKWDHDLFDEANKSPAKATEEEQIA 295

Query: 66  KVEALLAS 70
           KVEALLAS
Sbjct: 296 KVEALLAS 302

[Close]

BLAST of Carg19689 vs. TrEMBL
Match: tr|A0A1S3BY17|A0A1S3BY17_CUCME (uncharacterized protein LOC103494816 OS=Cucumis melo OX=3656 GN=LOC103494816 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 58/81 (71.60%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1   MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEAN 60
           MA+KRDEMKR             GGGNYRGRDRF  R+GYR  G TRVEK KHDLFHEAN
Sbjct: 253 MASKRDEMKRVGYPVRERYGNGSGGGNYRGRDRFGGRQGYRTSG-TRVEKWKHDLFHEAN 312

Query: 61  RSPTPKNEEDQISKVEALLAS 70
           RSPTPKNEEDQI+KVEALL+S
Sbjct: 313 RSPTPKNEEDQIAKVEALLSS 332

[Close]

BLAST of Carg19689 vs. TrEMBL
Match: tr|A0A0A0KV12|A0A0A0KV12_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 58/81 (71.60%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 1   MATKRDEMKR------------GGGGNYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEAN 60
           MA+KRDEMKR             GGGNYRGRDRF  R+GYR  G TRVEK KHDLFHEAN
Sbjct: 256 MASKRDEMKRVGYPVRERYGNGSGGGNYRGRDRFGGRQGYRTSG-TRVEKWKHDLFHEAN 315

Query: 61  RSPTPKNEEDQISKVEALLAS 70
           RSPTPKNEEDQI+KVEALL+S
Sbjct: 316 RSPTPKNEEDQIAKVEALLSS 335

[Close]

BLAST of Carg19689 vs. TrEMBL
Match: tr|A0A2P6PLG6|A0A2P6PLG6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0253781 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 5   RDEMKRGGGG-NYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKV 64
           R+    GG G NYRGRDRF ER+GY + G  RVEK  HDL+HEANRSPTPKNEEDQI+KV
Sbjct: 268 RERYTNGGAGRNYRGRDRFGERQGYHSTGG-RVEKWGHDLYHEANRSPTPKNEEDQIAKV 327

Query: 65  EALLAS 70
           EALLAS
Sbjct: 328 EALLAS 332

[Close]

BLAST of Carg19689 vs. TrEMBL
Match: tr|A0A2R6R1Z3|A0A2R6R1Z3_ACTCH (Pre-mRNA-splicing factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11298 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 15  NYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQISKVEALLAS 70
           NYRGR+RF+  +GYR GG  RVEK KHDLF E NRSPTPK EEDQI+KVEALLAS
Sbjct: 276 NYRGRERFNGTRGYRPGGGVRVEKWKHDLFEEGNRSPTPKKEEDQIAKVEALLAS 330

[Close]

BLAST of Carg19689 vs. TrEMBL
Match: tr|W9SX05|W9SX05_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003671 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.3e-13
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 3   TKRDEMKRGGGG--NYRGRDRFSERKGYRAGGSTRVEKRKHDLFHEANRSPTPKNEEDQI 62
           + R+  + GG G  NYRG DRFS R G+ + G T VEK KHDL+HEANRSPTPKNEEDQI
Sbjct: 264 SSRERYRGGGSGDRNYRGXDRFSGRSGFHSSG-THVEKWKHDLYHEANRSPTPKNEEDQI 323

Query: 63  SKVEALLAS 70
           +KVEALLAS
Sbjct: 324 AKVEALLAS 331

The following BLAST results are available for this feature:

BLAST of Carg19689 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942672.1	3.1e-23	86.96	pre-mRNA-splicing factor CWC25-like isoform X2 [Cucurbita moschata]	[more]
XP_022984554.1	2.6e-22	85.51	pre-mRNA-splicing factor CWC25 isoform X2 [Cucurbita maxima]	[more]
XP_022942670.1	1.5e-20	74.07	pre-mRNA-splicing factor CWC25-like isoform X1 [Cucurbita moschata] >XP_02294267...	[more]
XP_023521659.1	1.5e-20	74.07	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo]	[more]
XP_023548006.1	1.5e-20	74.07	pre-mRNA-splicing factor CWC25-like [Cucurbita pepo subsp. pepo] >XP_023548014.1...	[more]

BLAST of Carg19689 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19650.1	7.2e-06	52.94	cyclin-related	[more]

BLAST of Carg19689 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19689 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BY17\|A0A1S3BY17_CUCME	1.2e-18	71.60	uncharacterized protein LOC103494816 OS=Cucumis melo OX=3656 GN=LOC103494816 PE=...	[more]
tr\|A0A0A0KV12\|A0A0A0KV12_CUCSA	1.2e-18	71.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000750 PE=4 SV=1	[more]
tr\|A0A2P6PLG6\|A0A2P6PLG6_ROSCH	1.1e-13	72.73	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0253781 PE=4...	[more]
tr\|A0A2R6R1Z3\|A0A2R6R1Z3_ACTCH	2.5e-13	76.36	Pre-mRNA-splicing factor like OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]
tr\|W9SX05\|W9SX05_9ROSA	3.3e-13	68.12	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003671 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19689-RA	Carg19689-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	PANTHER	PTHR36364	FAMILY NOT NAMED	coord: 10..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19689	Cla006436	Watermelon (97103) v1	carwmB0287
Carg19689	Csa4G000750	Cucumber (Chinese Long) v2	carcuB0322
Carg19689	MELO3C018010	Melon (DHL92) v3.5.1	carmeB0297
Carg19689	ClCG10G010280	Watermelon (Charleston Gray)	carwcgB0287
Carg19689	CSPI04G00240	Wild cucumber (PI 183967)	carcpiB0328
Carg19689	Cucsa.298350	Cucumber (Gy14) v1	carcgyB0346
Carg19689	CmaCh04G004490	Cucurbita maxima (Rimu)	carcmaB0408
Carg19689	CmoCh04G004810	Cucurbita moschata (Rifu)	carcmoB0403
Carg19689	Lsi03G010180	Bottle gourd (USVL1VR-Ls)	carlsiB269
Carg19689	Cp4.1LG01g02630	Cucurbita pepo (Zucchini)	carcpeB0408
Carg19689	MELO3C018010.2	Melon (DHL92) v3.6.1	carmedB0308
Carg19689	CsaV3_4G000230	Cucumber (Chinese Long) v3	carcucB0328
Carg19689	Cla97C10G193230	Watermelon (97103) v2	carwmbB0302
Carg19689	Bhi11G000932	Wax gourd	carwgoB0381

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19689	Carg08119	Silver-seed gourd	carcarB324

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19689	Cucumber (Gy14) v2	carcgybB0309
Carg19689	Cucumber (Gy14) v1	carcgyB0344
Carg19689	Cucumber (Gy14) v1	carcgyB0348
Carg19689	Cucurbita maxima (Rimu)	carcmaB0405
Carg19689	Cucurbita maxima (Rimu)	carcmaB0406
Carg19689	Cucurbita maxima (Rimu)	carcmaB0407
Carg19689	Cucurbita moschata (Rifu)	carcmoB0401
Carg19689	Cucurbita moschata (Rifu)	carcmoB0402
Carg19689	Cucurbita pepo (Zucchini)	carcpeB0407
Carg19689	Cucurbita pepo (Zucchini)	carcpeB0409
Carg19689	Wild cucumber (PI 183967)	carcpiB0329
Carg19689	Cucumber (Chinese Long) v2	carcuB0323
Carg19689	Cucumber (Chinese Long) v3	carcucB0329
Carg19689	Melon (DHL92) v3.5.1	carmeB0295
Carg19689	Melon (DHL92) v3.6.1	carmedB0306
Carg19689	Watermelon (Charleston Gray)	carwcgB0288
Carg19689	Watermelon (97103) v2	carwmbB0303
Carg19689	Watermelon (97103) v2	carwmbB0305
Carg19689	Wax gourd	carwgoB0383