Carg19497 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19497
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	PLAC8 family protein
Location	Cucurbita_argyrosperma_scaffold_104 : 10834 .. 11508 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAAGTTCAAAACCGGATCAAGGATGGCGATTTGTTTGTGTCAAGAATTGTTGACAAAGCTCAATTAGAAGGTGGACTGTTTCCATTTCCTGATGACGTTAGAACAGCTTGCCTTTCCCTCTTCTGCAGCTTCTGCTTATTTGGATGGAACATGGAACGGTTAGGATTCGGGAACATGTACGTTCATGCTGCGACGTTCGTAATCTTTTGCACTGCCCGCTTTGTTTGTTTGGTTTGGCAGCTAATATTGTGGAACCTTTGTATGCTAAAGTAGCTCTCAGTTTAATTGGCATTCTTGTTTCTGTGTTTTGGGGCTGTTCTATGGTGGATACTGGAGGATTCAAATGAGGAAACGGTTCGATATAACGAAGAACGAGTCGTGTTGGGGGAAACCAAATCTGGAGACTGTGCACAATGGTTGTTCTGCTGCTGCTGCTCTCTTGCTCAGGAGGTTAGGACAGCTGATTACTATGAATTAATGGAAGACAACCTCGGAAAAAACCGAACGAACGGCAGAGACAAGATCGAAATCCTGTCGCCATTACCTCGTGAAGGTGGAACAGTTCATGAGGATAGATCAAACCTGGATTCAAACAGGTTTTTAGATGAAACTGATGGAGTAAACCAGCTTTTTGAAGCCCCCTACTCCATCATCAATGCAAAGAGATGA

mRNA sequence

ATGAGGAAAGTTCAAAACCGGATCAAGGATGGCGATTTGTTTGTGTCAAGAATTGTTGACAAAGCTCAATTAGAAGGTGGACTGTTTCCATTTCCTGATGACGTTAGAACAGCTTGCCTTTCCCTCTTCTGCAGCTTCTGCTTATTTGGATGGAACATGGAACGGTTAGGATTCGGGAACATGTACGTTCATGCTGCGACGTTCGTAATCTTTTGCACTGCCCGCTTTGATTCAAATGAGGAAACGGTTCGATATAACGAAGAACGAGTCGTGTTGGGGGAAACCAAATCTGGAGACTGTGCACAATGGTTGTTCTGCTGCTGCTGCTCTCTTGCTCAGGAGGTTAGGACAGCTGATTACTATGAATTAATGGAAGACAACCTCGGAAAAAACCGAACGAACGGCAGAGACAAGATCGAAATCCTGTCGCCATTACCTCGTGAAGGTGGAACAGTTCATGAGGATAGATCAAACCTGGATTCAAACAGGTTTTTAGATGAAACTGATGGAGTAAACCAGCTTTTTGAAGCCCCCTACTCCATCATCAATGCAAAGAGATGA

Coding sequence (CDS)

ATGAGGAAAGTTCAAAACCGGATCAAGGATGGCGATTTGTTTGTGTCAAGAATTGTTGACAAAGCTCAATTAGAAGGTGGACTGTTTCCATTTCCTGATGACGTTAGAACAGCTTGCCTTTCCCTCTTCTGCAGCTTCTGCTTATTTGGATGGAACATGGAACGGTTAGGATTCGGGAACATGTACGTTCATGCTGCGACGTTCGTAATCTTTTGCACTGCCCGCTTTGATTCAAATGAGGAAACGGTTCGATATAACGAAGAACGAGTCGTGTTGGGGGAAACCAAATCTGGAGACTGTGCACAATGGTTGTTCTGCTGCTGCTGCTCTCTTGCTCAGGAGGTTAGGACAGCTGATTACTATGAATTAATGGAAGACAACCTCGGAAAAAACCGAACGAACGGCAGAGACAAGATCGAAATCCTGTCGCCATTACCTCGTGAAGGTGGAACAGTTCATGAGGATAGATCAAACCTGGATTCAAACAGGTTTTTAGATGAAACTGATGGAGTAAACCAGCTTTTTGAAGCCCCCTACTCCATCATCAATGCAAAGAGATGA

Protein sequence

MRKVQNRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHAATFVIFCTARFDSNEETVRYNEERVVLGETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPREGGTVHEDRSNLDSNRFLDETDGVNQLFEAPYSIINAKR

Homology

[Close]

BLAST of Carg19497 vs. NCBI nr
Match: XP_022950414.1 (uncharacterized protein LOC111453521 isoform X2 [Cucurbita moschata] >XP_022950415.1 uncharacterized protein LOC111453521 isoform X2 [Cucurbita moschata])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 147/211 (69.67%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 6   NRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA 65
           NRIKDGDLFVSRIVDK Q  GGLF F DDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA
Sbjct: 214 NRIKDGDLFVSRIVDKPQWRGGLFHFLDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA 273

Query: 66  ATFVIFCTA---RFDSNEETVRYNEERVVL------------------------------ 125
           ATFVIFCTA    F      V     +V L                              
Sbjct: 274 ATFVIFCTAPLCLFGLAANIVEPLYAKVALSLIGILVSVFGLFYGGYWRIQMRKRFDITK 333

Query: 126 -----GETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPR 179
                G+  +GDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPR
Sbjct: 334 NESCWGKPNAGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPR 393

[Close]

BLAST of Carg19497 vs. NCBI nr
Match: XP_022950413.1 (uncharacterized protein LOC111453521 isoform X1 [Cucurbita moschata])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 147/211 (69.67%), Postives = 151/211 (71.56%), Query Frame = 0


Query: 6   NRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA 65
           NRIKDGDLFVSRIVDK Q  GGLF F DDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA
Sbjct: 253 NRIKDGDLFVSRIVDKPQWRGGLFHFLDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA 312

Query: 66  ATFVIFCTA---RFDSNEETVRYNEERVVL------------------------------ 125
           ATFVIFCTA    F      V     +V L                              
Sbjct: 313 ATFVIFCTAPLCLFGLAANIVEPLYAKVALSLIGILVSVFGLFYGGYWRIQMRKRFDITK 372

Query: 126 -----GETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPR 179
                G+  +GDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPR
Sbjct: 373 NESCWGKPNAGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPR 432

[Close]

BLAST of Carg19497 vs. NCBI nr
Match: XP_022978140.1 (uncharacterized protein LOC111478210 isoform X1 [Cucurbita maxima] >XP_022978141.1 uncharacterized protein LOC111478210 isoform X1 [Cucurbita maxima] >XP_022978142.1 uncharacterized protein LOC111478210 isoform X1 [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 141/218 (64.68%), Postives = 148/218 (67.89%), Query Frame = 0


Query: 6   NRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA 65
           NRI DGDLFVSRIVDK Q  GGLF F DD+RTACLS+FCSFCLFGWNMERLGFGNMYVHA
Sbjct: 297 NRINDGDLFVSRIVDKPQWRGGLFHFLDDIRTACLSVFCSFCLFGWNMERLGFGNMYVHA 356

Query: 66  ATFVIFCTA---------------------------------------------RFDSNE 125
           ATFVIFCTA                                             RFD  +
Sbjct: 357 ATFVIFCTAPLCLFGLAANIVEPWYAKVALSLIGILVSVFGLFYGGYWRIQMRKRFDITK 416

Query: 126 ETVRYNEERVVLGETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIE 179
             + + +  VV       DCAQWLFCCCCSLAQE RTADYYELMEDNLGKNRTNGRDK E
Sbjct: 417 NELCWGKPNVV-------DCAQWLFCCCCSLAQEARTADYYELMEDNLGKNRTNGRDKNE 476

[Close]

BLAST of Carg19497 vs. NCBI nr
Match: XP_022978143.1 (uncharacterized protein LOC111478210 isoform X2 [Cucurbita maxima] >XP_022978144.1 uncharacterized protein LOC111478210 isoform X2 [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 141/218 (64.68%), Postives = 148/218 (67.89%), Query Frame = 0


Query: 6   NRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA 65
           NRI DGDLFVSRIVDK Q  GGLF F DD+RTACLS+FCSFCLFGWNMERLGFGNMYVHA
Sbjct: 214 NRINDGDLFVSRIVDKPQWRGGLFHFLDDIRTACLSVFCSFCLFGWNMERLGFGNMYVHA 273

Query: 66  ATFVIFCTA---------------------------------------------RFDSNE 125
           ATFVIFCTA                                             RFD  +
Sbjct: 274 ATFVIFCTAPLCLFGLAANIVEPWYAKVALSLIGILVSVFGLFYGGYWRIQMRKRFDITK 333

Query: 126 ETVRYNEERVVLGETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIE 179
             + + +  VV       DCAQWLFCCCCSLAQE RTADYYELMEDNLGKNRTNGRDK E
Sbjct: 334 NELCWGKPNVV-------DCAQWLFCCCCSLAQEARTADYYELMEDNLGKNRTNGRDKNE 393

[Close]

BLAST of Carg19497 vs. NCBI nr
Match: XP_023544238.1 (uncharacterized protein LOC111803874 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544239.1 uncharacterized protein LOC111803874 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544241.1 uncharacterized protein LOC111803874 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69
Identity = 141/218 (64.68%), Postives = 147/218 (67.43%), Query Frame = 0


Query: 6   NRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA 65
           NRI DG+L VSRIVDK Q  GGLF F DD+RTACLSLFCSFCLFGWNMERLGFGNMYVHA
Sbjct: 277 NRINDGNLCVSRIVDKPQWRGGLFHFLDDIRTACLSLFCSFCLFGWNMERLGFGNMYVHA 336

Query: 66  ATFVIFCTA---------------------------------------------RFDSNE 125
           ATFVIFCTA                                             RFD  +
Sbjct: 337 ATFVIFCTAPLCLFGLAANIVEPLYAKVALSLIGILVSVFGLFYGGYWRIQMRKRFDITK 396

Query: 126 ETVRYNEERVVLGETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIE 179
               + +  VV       DCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDK E
Sbjct: 397 NESCWGKPNVV-------DCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKNE 456

[Close]

BLAST of Carg19497 vs. TAIR10
Match: AT5G05350.1 (PLAC8 family protein)

HSP 1 Score: 124.4 bits (311), Expect = 7.3e-29
Identity = 73/180 (40.56%), Postives = 88/180 (48.89%), Query Frame = 0


Query: 14  FVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHAATFVIFCT 73
           F S  V   +   G+    +D+  A LSLFC+FCLFGWNMER+GFGNMYVH ATFV+FC 
Sbjct: 297 FASNDVSNPEWREGVLDIWEDISLAYLSLFCTFCLFGWNMERIGFGNMYVHIATFVLFCL 356

Query: 74  ARF--------DSNEETVR---------------------------------YNEERVVL 133
           A F        + + E VR                                 YN   +  
Sbjct: 357 APFFIFNLAAINIDNEMVRDALGYTGIVLCLFGLLYGGFWRIQMRKRFKLPGYN---ICC 416

Query: 134 GETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGR--DKIEILSPLPREGG 151
           G     DC  WLFCC CSLAQEVRTA+ YE++ED   K R      D   ++S LPRE G
Sbjct: 417 GRPAIADCTLWLFCCWCSLAQEVRTANSYEIVEDKFCKRREENSKIDDEVVVSALPREDG 473

[Close]

BLAST of Carg19497 vs. TAIR10
Match: AT3G10980.1 (PLAC8 family protein)

HSP 1 Score: 124.0 bits (310), Expect = 9.6e-29
Identity = 75/186 (40.32%), Postives = 92/186 (49.46%), Query Frame = 0


Query: 19  VDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHAATFVIFCTARF-- 78
           V   Q  GG+    DD+  A LSLFC+FC+FGWNMER+GFGNMYVH ATF++FC A F  
Sbjct: 331 VSDPQWSGGILDIWDDISLAYLSLFCTFCVFGWNMERVGFGNMYVHIATFILFCLAPFFI 390

Query: 79  ------DSNEETVR---------------------------------YNEERVVLGETKS 138
                 + + ETVR                                 YN      G    
Sbjct: 391 FNLAAVNIDNETVREALGISGILLCVFGLLYGGFWRIQMRKRFKLPSYN---FCFGRAAI 450

Query: 139 GDCAQWLFCCCCSLAQEVRTADYYELMEDNL-GKNRTNGRDKIEILSPLPREGGTVHEDR 163
            DCA WL CC CSLAQEVRTA+ YE++ED    +          ++SPLPRE G V + R
Sbjct: 451 ADCALWLCCCWCSLAQEVRTANSYEIVEDKFCQRKEEKNMVSPNLVSPLPREDG-VFDPR 510

[Close]

BLAST of Carg19497 vs. TAIR10
Match: AT3G18470.1 (PLAC8 family protein)

HSP 1 Score: 42.0 bits (97), Expect = 4.8e-04
Identity = 31/101 (30.69%), Postives = 41/101 (40.59%), Query Frame = 0


Query: 23  QLEGGLFPFPDDVRTACLSLFCSFCLFGWNME-----RLGFG--NMYVHAATFVIFCTAR 82
           Q   GLF   +D  TACL+ FC    FG   +     R G G   ++      V+     
Sbjct: 4   QWTSGLFSCMEDSETACLTCFCPCVTFGRIADISDEGRTGCGRCGVFYGLICCVVGLPCL 63

Query: 83  FDSNEETVRYNEERVVLGETKSGDCAQWLFCCCCSLAQEVR 117
           F     T      +  L E+ + DC    FC CC+L QE R
Sbjct: 64  FSCTYRT--KIRSKFGLPESPTSDCVTHFFCECCALCQEHR 102

[Close]

BLAST of Carg19497 vs. TrEMBL
Match: tr|A0A0A0KY50|A0A0A0KY50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G325530 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.6e-52
Identity = 121/230 (52.61%), Postives = 130/230 (56.52%), Query Frame = 0


Query: 6   NRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHA 65
           NRIK+   F SRIVDK Q  GGLF F DD++TACLSLFCSFCLFGWNMERLGFGNMYVH 
Sbjct: 263 NRIKESISFESRIVDKPQWRGGLFHFLDDIKTACLSLFCSFCLFGWNMERLGFGNMYVHV 322

Query: 66  ATFVIFCTA---RFDSNEETVRYNEERVVL------------------------------ 125
            TFVIFC A    F     TV     +V                                
Sbjct: 323 TTFVIFCFAPLCLFGLAANTVDPWSVKVAFCLIGILLSVFGLLYGGYWRIQMRKRFDLPK 382

Query: 126 -----GETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPR 179
                G+    DCAQWLFCCCCSLAQEVRTADYYE M+DNL KNRTN  DK E+LSPLPR
Sbjct: 383 NNSFWGKPNVADCAQWLFCCCCSLAQEVRTADYYETMKDNLCKNRTNDADKNEVLSPLPR 442

[Close]

BLAST of Carg19497 vs. TrEMBL
Match: tr|A0A1S3CMK5|A0A1S3CMK5_CUCME (uncharacterized protein LOC103502180 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502180 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 118/233 (50.64%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 3   KVQNRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMY 62
           K  N+IK+   F SRI DK Q  G LF F DD++TACLSLFCSFCLFGWNMERLGFGN Y
Sbjct: 261 KNPNQIKESISFASRIADKPQWRGELFHFLDDIKTACLSLFCSFCLFGWNMERLGFGNTY 320

Query: 63  VHAATFVIFCTA---RFDSNEETVRYNEERVVL--------------------------- 122
           VH  TFVIFC+A    F     TV     +V                             
Sbjct: 321 VHITTFVIFCSAPLCLFGLAANTVDPWSVKVAFCLIGILLSVFGLLYGGYWRIQMRKRFD 380

Query: 123 --------GETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSP 179
                   G+    DCAQWLFCCCCSLAQEVRTADYYE M+DNL KNRT+  DK E LSP
Sbjct: 381 LPKNNSFWGKPNVADCAQWLFCCCCSLAQEVRTADYYETMKDNLCKNRTSHADKNEDLSP 440

[Close]

BLAST of Carg19497 vs. TrEMBL
Match: tr|A0A1S3CL62|A0A1S3CL62_CUCME (uncharacterized protein LOC103502180 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502180 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 118/233 (50.64%), Postives = 128/233 (54.94%), Query Frame = 0


Query: 3   KVQNRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMY 62
           K  N+IK+   F SRI DK Q  G LF F DD++TACLSLFCSFCLFGWNMERLGFGN Y
Sbjct: 104 KNPNQIKESISFASRIADKPQWRGELFHFLDDIKTACLSLFCSFCLFGWNMERLGFGNTY 163

Query: 63  VHAATFVIFCTA---RFDSNEETVRYNEERVVL--------------------------- 122
           VH  TFVIFC+A    F     TV     +V                             
Sbjct: 164 VHITTFVIFCSAPLCLFGLAANTVDPWSVKVAFCLIGILLSVFGLLYGGYWRIQMRKRFD 223

Query: 123 --------GETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSP 179
                   G+    DCAQWLFCCCCSLAQEVRTADYYE M+DNL KNRT+  DK E LSP
Sbjct: 224 LPKNNSFWGKPNVADCAQWLFCCCCSLAQEVRTADYYETMKDNLCKNRTSHADKNEDLSP 283

[Close]

BLAST of Carg19497 vs. TrEMBL
Match: tr|A0A2K1XF09|A0A2K1XF09_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G129700v3 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 84/175 (48.00%), Postives = 104/175 (59.43%), Query Frame = 0


Query: 17  RIVDKA-QLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHAATFVIFCTAR 76
           RIV+ A +  GGLF F D++RTA LSLFCSFC+FGWNMERLGFGNMYVH ATF++FCTA 
Sbjct: 333 RIVEYAPEWRGGLFDFRDNIRTAYLSLFCSFCVFGWNMERLGFGNMYVHIATFLLFCTAP 392

Query: 77  F--------DSNEETV----------------------------RYN--EERVVLGETKS 136
           F        + + ETV                            R+N  E  + +G+   
Sbjct: 393 FWIFNLAAINIDNETVRVALGLTGIALCLFGLLYGGFWRIQMRKRFNLPESNIFIGKPAI 452

Query: 137 GDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPREGGTV 153
            DCAQWLFCC CSLAQEVRTAD+Y+++ED   + +TN  +    L  LPRE G V
Sbjct: 453 ADCAQWLFCCWCSLAQEVRTADFYDIVEDKFCRKQTNEINH-PTLPSLPREDGVV 506

[Close]

BLAST of Carg19497 vs. TrEMBL
Match: tr|A0A200QQB9|A0A200QQB9_9MAGN (Uncharacterized protein family Cys-rich OS=Macleaya cordata OX=56857 GN=BVC80_9017g39 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 84/190 (44.21%), Postives = 103/190 (54.21%), Query Frame = 0


Query: 6   NRIKDGDLFVSR-----IVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGN 65
           NR++    F SR     +V+K +  GGLF F DD+  A LS FC+FC+FGWNMERLGFGN
Sbjct: 320 NRLEKKFSFASREDGKVVVEKPEWSGGLFDFWDDISLAYLSFFCTFCVFGWNMERLGFGN 379

Query: 66  MYVHAATFVIFCTARF--------DSNEETVR--YNEERVVL------------------ 125
           MYVH ATF++FC A F        + + ETVR       VVL                  
Sbjct: 380 MYVHIATFILFCFAPFWIFNLAALNIDNETVRGALGVTGVVLCIFGLLYGGFWRIQMRKR 439

Query: 126 ----------GETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEIL 153
                     G     DCAQWLFCC CSLAQEVRT D+YE++ED       +  D+  +L
Sbjct: 440 FNLPASDFCCGNPAVSDCAQWLFCCSCSLAQEVRTGDFYEIVEDKFYSREMDENDQ-PVL 499

The following BLAST results are available for this feature:

BLAST of Carg19497 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950414.1	2.3e-73	69.67	uncharacterized protein LOC111453521 isoform X2 [Cucurbita moschata] >XP_0229504...	[more]
XP_022950413.1	2.3e-73	69.67	uncharacterized protein LOC111453521 isoform X1 [Cucurbita moschata]	[more]
XP_022978140.1	3.2e-70	64.68	uncharacterized protein LOC111478210 isoform X1 [Cucurbita maxima] >XP_022978141...	[more]
XP_022978143.1	3.2e-70	64.68	uncharacterized protein LOC111478210 isoform X2 [Cucurbita maxima] >XP_022978144...	[more]
XP_023544238.1	3.5e-69	64.68	uncharacterized protein LOC111803874 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

BLAST of Carg19497 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05350.1	7.3e-29	40.56	PLAC8 family protein	[more]
AT3G10980.1	9.6e-29	40.32	PLAC8 family protein	[more]
AT3G18470.1	4.8e-04	30.69	PLAC8 family protein	[more]

BLAST of Carg19497 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19497 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KY50\|A0A0A0KY50_CUCSA	2.6e-52	52.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G325530 PE=4 SV=1	[more]
tr\|A0A1S3CMK5\|A0A1S3CMK5_CUCME	2.0e-49	50.64	uncharacterized protein LOC103502180 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CL62\|A0A1S3CL62_CUCME	2.0e-49	50.64	uncharacterized protein LOC103502180 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2K1XF09\|A0A2K1XF09_POPTR	2.0e-33	48.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G129700v3 PE=...	[more]
tr\|A0A200QQB9\|A0A200QQB9_9MAGN	1.1e-31	44.21	Uncharacterized protein family Cys-rich OS=Macleaya cordata OX=56857 GN=BVC80_90...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006461	PLAC_motif_containing

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19497-RA	Carg19497-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006461	PLAC8 motif-containing protein	PFAM	PF04749	PLAC8	coord: 26..116 e-value: 7.4E-10 score: 39.6
IPR006461	PLAC8 motif-containing protein	TIGRFAM	TIGR01571	TIGR01571	coord: 26..118 e-value: 5.1E-14 score: 50.9
None	No IPR available	PANTHER	PTHR31045	FAMILY NOT NAMED	coord: 86..153
None	No IPR available	PANTHER	PTHR31045	FAMILY NOT NAMED	coord: 4..89
None	No IPR available	PANTHER	PTHR31045:SF15	SUBFAMILY NOT NAMED	coord: 4..89
None	No IPR available	PANTHER	PTHR31045:SF15	SUBFAMILY NOT NAMED	coord: 86..153

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19497	Cla012013	Watermelon (97103) v1	carwmB0626
Carg19497	Csa4G325530	Cucumber (Chinese Long) v2	carcuB0650
Carg19497	MELO3C026042	Melon (DHL92) v3.5.1	carmeB0627
Carg19497	ClCG11G005900	Watermelon (Charleston Gray)	carwcgB0607
Carg19497	ClCG04G006560	Watermelon (Charleston Gray)	carwcgB0609
Carg19497	CSPI04G16330	Wild cucumber (PI 183967)	carcpiB0660
Carg19497	Cucsa.130340	Cucumber (Gy14) v1	carcgyB0702
Carg19497	CmaCh03G003100	Cucurbita maxima (Rimu)	carcmaB0887
Carg19497	CmoCh03G003230	Cucurbita moschata (Rifu)	carcmoB0862
Carg19497	Lsi01G015940	Bottle gourd (USVL1VR-Ls)	carlsiB571
Carg19497	Lsi03G002830	Bottle gourd (USVL1VR-Ls)	carlsiB572
Carg19497	Cp4.1LG10g07640	Cucurbita pepo (Zucchini)	carcpeB0891
Carg19497	Cp4.1LG01g21910	Cucurbita pepo (Zucchini)	carcpeB0892
Carg19497	CsGy4G015650	Cucumber (Gy14) v2	carcgybB0626
Carg19497	MELO3C026042.2	Melon (DHL92) v3.6.1	carmedB0635
Carg19497	CsaV3_4G026940	Cucumber (Chinese Long) v3	carcucB0661
Carg19497	Cla97C11G212810	Watermelon (97103) v2	carwmbB0652
Carg19497	Cla97C04G073170	Watermelon (97103) v2	carwmbB0654
Carg19497	Bhi03G001737	Wax gourd	carwgoB0747

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19497	Carg05956	Silver-seed gourd	carcarB024

The following block(s) are covering this gene:

None