Carg19497-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGAAAGTTCAAAACCGGATCAAGGATGGCGATTTGTTTGTGTCAAGAATTGTTGACAAAGCTCAATTAGAAGGTGGACTGTTTCCATTTCCTGATGACGTTAGAACAGCTTGCCTTTCCCTCTTCTGCAGCTTCTGCTTATTTGGATGGAACATGGAACGGTTAGGATTCGGGAACATGTACGTTCATGCTGCGACGTTCGTAATCTTTTGCACTGCCCGCTTTGTTTGTTTGGTTTGGCAGCTAATATTGTGGAACCTTTGTATGCTAAAGTAGCTCTCAGTTTAATTGGCATTCTTGTTTCTGTGTTTTGGGGCTGTTCTATGGTGGATACTGGAGGATTCAAATGAGGAAACGGTTCGATATAACGAAGAACGAGTCGTGTTGGGGGAAACCAAATCTGGAGACTGTGCACAATGGTTGTTCTGCTGCTGCTGCTCTCTTGCTCAGGAGGTTAGGACAGCTGATTACTATGAATTAATGGAAGACAACCTCGGAAAAAACCGAACGAACGGCAGAGACAAGATCGAAATCCTGTCGCCATTACCTCGTGAAGGTGGAACAGTTCATGAGGATAGATCAAACCTGGATTCAAACAGGTTTTTAGATGAAACTGATGGAGTAAACCAGCTTTTTGAAGCCCCCTACTCCATCATCAATGCAAAGAGATGA ATGAGGAAAGTTCAAAACCGGATCAAGGATGGCGATTTGTTTGTGTCAAGAATTGTTGACAAAGCTCAATTAGAAGGTGGACTGTTTCCATTTCCTGATGACGTTAGAACAGCTTGCCTTTCCCTCTTCTGCAGCTTCTGCTTATTTGGATGGAACATGGAACGGTTAGGATTCGGGAACATGTACGTTCATGCTGCGACGTTCGTAATCTTTTGCACTGCCCGCTTTGATTCAAATGAGGAAACGGTTCGATATAACGAAGAACGAGTCGTGTTGGGGGAAACCAAATCTGGAGACTGTGCACAATGGTTGTTCTGCTGCTGCTGCTCTCTTGCTCAGGAGGTTAGGACAGCTGATTACTATGAATTAATGGAAGACAACCTCGGAAAAAACCGAACGAACGGCAGAGACAAGATCGAAATCCTGTCGCCATTACCTCGTGAAGGTGGAACAGTTCATGAGGATAGATCAAACCTGGATTCAAACAGGTTTTTAGATGAAACTGATGGAGTAAACCAGCTTTTTGAAGCCCCCTACTCCATCATCAATGCAAAGAGATGA ATGAGGAAAGTTCAAAACCGGATCAAGGATGGCGATTTGTTTGTGTCAAGAATTGTTGACAAAGCTCAATTAGAAGGTGGACTGTTTCCATTTCCTGATGACGTTAGAACAGCTTGCCTTTCCCTCTTCTGCAGCTTCTGCTTATTTGGATGGAACATGGAACGGTTAGGATTCGGGAACATGTACGTTCATGCTGCGACGTTCGTAATCTTTTGCACTGCCCGCTTTGATTCAAATGAGGAAACGGTTCGATATAACGAAGAACGAGTCGTGTTGGGGGAAACCAAATCTGGAGACTGTGCACAATGGTTGTTCTGCTGCTGCTGCTCTCTTGCTCAGGAGGTTAGGACAGCTGATTACTATGAATTAATGGAAGACAACCTCGGAAAAAACCGAACGAACGGCAGAGACAAGATCGAAATCCTGTCGCCATTACCTCGTGAAGGTGGAACAGTTCATGAGGATAGATCAAACCTGGATTCAAACAGGTTTTTAGATGAAACTGATGGAGTAAACCAGCTTTTTGAAGCCCCCTACTCCATCATCAATGCAAAGAGATGA MRKVQNRIKDGDLFVSRIVDKAQLEGGLFPFPDDVRTACLSLFCSFCLFGWNMERLGFGNMYVHAATFVIFCTARFDSNEETVRYNEERVVLGETKSGDCAQWLFCCCCSLAQEVRTADYYELMEDNLGKNRTNGRDKIEILSPLPREGGTVHEDRSNLDSNRFLDETDGVNQLFEAPYSIINAKR
BLAST of Carg19497-RA vs. NCBI nr
Match: XP_022950414.1 (uncharacterized protein LOC111453521 isoform X2 [Cucurbita moschata] >XP_022950415.1 uncharacterized protein LOC111453521 isoform X2 [Cucurbita moschata]) HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73 Identity = 147/211 (69.67%), Postives = 151/211 (71.56%), Query Frame = 0
BLAST of Carg19497-RA vs. NCBI nr
Match: XP_022950413.1 (uncharacterized protein LOC111453521 isoform X1 [Cucurbita moschata]) HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73 Identity = 147/211 (69.67%), Postives = 151/211 (71.56%), Query Frame = 0
BLAST of Carg19497-RA vs. NCBI nr
Match: XP_022978140.1 (uncharacterized protein LOC111478210 isoform X1 [Cucurbita maxima] >XP_022978141.1 uncharacterized protein LOC111478210 isoform X1 [Cucurbita maxima] >XP_022978142.1 uncharacterized protein LOC111478210 isoform X1 [Cucurbita maxima]) HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70 Identity = 141/218 (64.68%), Postives = 148/218 (67.89%), Query Frame = 0
BLAST of Carg19497-RA vs. NCBI nr
Match: XP_022978143.1 (uncharacterized protein LOC111478210 isoform X2 [Cucurbita maxima] >XP_022978144.1 uncharacterized protein LOC111478210 isoform X2 [Cucurbita maxima]) HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70 Identity = 141/218 (64.68%), Postives = 148/218 (67.89%), Query Frame = 0
BLAST of Carg19497-RA vs. NCBI nr
Match: XP_023544238.1 (uncharacterized protein LOC111803874 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544239.1 uncharacterized protein LOC111803874 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544241.1 uncharacterized protein LOC111803874 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 270.8 bits (691), Expect = 3.5e-69 Identity = 141/218 (64.68%), Postives = 147/218 (67.43%), Query Frame = 0
BLAST of Carg19497-RA vs. TAIR10
Match: AT5G05350.1 (PLAC8 family protein) HSP 1 Score: 124.4 bits (311), Expect = 7.3e-29 Identity = 73/180 (40.56%), Postives = 88/180 (48.89%), Query Frame = 0
BLAST of Carg19497-RA vs. TAIR10
Match: AT3G10980.1 (PLAC8 family protein) HSP 1 Score: 124.0 bits (310), Expect = 9.6e-29 Identity = 75/186 (40.32%), Postives = 92/186 (49.46%), Query Frame = 0
BLAST of Carg19497-RA vs. TAIR10
Match: AT3G18470.1 (PLAC8 family protein) HSP 1 Score: 42.0 bits (97), Expect = 4.8e-04 Identity = 31/101 (30.69%), Postives = 41/101 (40.59%), Query Frame = 0
BLAST of Carg19497-RA vs. TrEMBL
Match: tr|A0A0A0KY50|A0A0A0KY50_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G325530 PE=4 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 2.6e-52 Identity = 121/230 (52.61%), Postives = 130/230 (56.52%), Query Frame = 0
BLAST of Carg19497-RA vs. TrEMBL
Match: tr|A0A1S3CMK5|A0A1S3CMK5_CUCME (uncharacterized protein LOC103502180 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502180 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49 Identity = 118/233 (50.64%), Postives = 128/233 (54.94%), Query Frame = 0
BLAST of Carg19497-RA vs. TrEMBL
Match: tr|A0A1S3CL62|A0A1S3CL62_CUCME (uncharacterized protein LOC103502180 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502180 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49 Identity = 118/233 (50.64%), Postives = 128/233 (54.94%), Query Frame = 0
BLAST of Carg19497-RA vs. TrEMBL
Match: tr|A0A2K1XF09|A0A2K1XF09_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G129700v3 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33 Identity = 84/175 (48.00%), Postives = 104/175 (59.43%), Query Frame = 0
BLAST of Carg19497-RA vs. TrEMBL
Match: tr|A0A200QQB9|A0A200QQB9_9MAGN (Uncharacterized protein family Cys-rich OS=Macleaya cordata OX=56857 GN=BVC80_9017g39 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31 Identity = 84/190 (44.21%), Postives = 103/190 (54.21%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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