Carg19266 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19266
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Prefoldin subunit 6
Location	Cucurbita_argyrosperma_scaffold_137 : 68889 .. 71109 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGTCTTGAATTGGGGCGATTTTGGGCTTGTGAGATCAGCGGTATATAAATCGCTACTGTACTATTTGCCGCGAGGGACGTATATCGTACCAGTTGTTATTGTTCCGACTAAGGAAGGCGAAGAAAGAAGCCGAAGCAACGAAGTTTCAGAATGAGCTCCTTCACGATTATCAGGAGCTACAGCGAGATCTCAAGATGAAAGGCAGAGATCTTAGTAAGTTTCAGAAAGGCAAGCATCGTCACTAAGATTCTGCTCGCGCATTTCTGTAATTACATTTTCATTCCCTCAAATTCCACTATTCCACGACTCTACGCATTTTCTGGTGCAAATTTTTGTTTGAAGATCTGGTGCAAATTTTTGTTTGAAGATCTGGTGCATGATTCGAAATTCTGATTTGGTGAATGATTTGCCAGGCCTTGCGAAGAATTACTAAGCAAGAGCGAAGTGTGATACAGAGCTATGTGAAAACGAAGTCTGCTCTCAAGGTCATAACATTTCTTCACTCAACTTACGCCTTATCTCTACTTCTTGTCTGGTTTATGAGAACTTAAAAGTGAATATGAATCTGTCTGAAGTTTTATGCATTTCTTCTCAAATCTTTTCGTGTTCGACTTTGCTTCACGTCTATGTGTTATTTGAGTCGTTTTTCCGAGTCTCTTAGGTACCACTGCATTGATAATAAAGAGCGACATCAATTAATTCTATTTCGGAATACATTATCTTGCTTCTACTGTATTCTACTGATCAAGAAGGGCGCTGTTGTCGTCGTCAAGTCCGAGATCGATTGTTATATGGCGTGTAAGCCTTTCATTTTTAATTCTTGCATTCTTTTGTGGCGTTATGCAGGAATTGGATTTGCTGAAAGAGGATGCAACTGTTTACAAATTAGTTGGCCATATTCTTGTGAAGCAAGATCTATCATGGCCAAATGAAAATGTTCGGATGAGAACTGGTTATCTCGCTGATGAATAGTATGTTTCTGTCTCAATTACTTTCAGTATGTCGTGGATTTACGTTGCGCTAACATTCTTCAGCATCGAAGTTGCTTGGTTCCTTGCTATCTCTGATCTAATGTTAAGATTCATTTACCTAATCCGGTCAACGGCAACTTTGTGTCGATCTGGAGGATTTTATCCATTGTTTAGGACAAGCAATGAGTTACTAGTGCGCCGTTCAGGAAAAAATGGTCCATTATATTTGCAGCTAAACGATCCTTTAGGATTGTTCTGGCGAGAGGCCATCTGGATTTAGTTAAGAGGAGGGAGTTCAAATCACATAATTGAAAAAAAAAAAATAAAAATCAAATAGGTGAAAGAAGAATTTCAATTTCAAAACTGGTATCCTAGCTAATTGGTGACATTCTTATCTTGACTTTTGTTTGAGTAATTGTCAAATGCATATATCCAAATGTTTATTTGAAATCTGAACGCCTTGCCCCGGAGGTAGTGTAAGAGCTGTTACAACGGAAAAATATAACATCATCTAATTCGAGCAATGCAATGTTGATGAAGTTTATAGCATGTGATTAGCATTAATAATTACCATCACGAACTTCTGCATTGTCTTATTCTTATCAATCTAACAATTCTCTTAATGTTGGTATTCGTGCTTGCATTCCTCAATATTTGGTGTTCTTGAAATATTTTTCATTTCTACGTCTCAGTGGATTCATTCATCGTAGGCTGACATACCTGTGCGCAATAGTTGTAGTTATGAGTGCGCGTTATCTCTGACCACAATAATTCCAAGTTTTCATTACAGGAAACGCGCTGGTGCAATTATCGAAGATTTGGAAGAGAAGCAAATGAGCAAAAGAGACAAGGTTAGCATTTATTTATCATGCATTTTAGATATAGGACATGCCTTCAGATCGAATACGACGATTTGCCCCGATTTTTATGAGTCGGTGATGAAATTTTCTGAACTCAAATTCTTGCATTACGAATGATGAAATTTTCTGAACTCAAATTCTTGCATTACGAAGTTCAAGTATTGATGATCACTTTATTATTTATTTTTATTTTTTTTGGACATAATAGTAATTTACGATTAGTGCTTTATCTTTTTCGTTGGTATATGACGATTTGCCCCGATTTTTATGGATCGTTGATGAAATTTTCTGAATTCAAATCCTTGCATTACGAGACGAGGTTCAAATATTGATGGTCACTTTGTTTTTATTTTTCTTTTTTTTTTCTTTTTTTTTTTGAAAAAGG

mRNA sequence

ATGCCAGTCTTGAATTGGGGCGATTTTGGGCTTGTGAGATCAGCGGTATATAAATCGCTACTGTACTATTTGCCGCGAGGGACGTATATCGTACCAGTTGTTATTGTTCCGACTAAGGAAGGCGAAGAAAGAAGCCGAAGCAACGAAGCCTTGCGAAGAATTACTAAGCAAGAGCGAAGTGTGATACAGAGCTATGTGAAAACGAAGTCTGCTCTCAAGGAATTGGATTTGCTGAAAGAGGATGCAACTGTTTACAAATTAGTTGGCCATATTCTTGTGAAGCAAGATCTATCATGGCCAAATGAAAATGTTCGGATGAGAACTGGTTATCTCGCTGATGAATAGAAACGCGCTGGTGCAATTATCGAAGATTTGGAAGAGAAGCAAATGAGCAAAAGAGACAAGGTTAGCATTTATTTATCATGCATTTTAGATATAGGACATGCCTTCAGATCGAATACGACGATTTGCCCCGATTTTTATGAGTCGGTGATGAAATTTTCTGAACTCAAATTCTTGCATTACGAATGATGAAATTTTCTGAACTCAAATTCTTGCATTACGAAGTTCAAGTATTGATGATCACTTTATTATTTATTTTTATTTTTTTTGGACATAATAGTAATTTACGATTAGTGCTTTATCTTTTTCGTTGGTATATGACGATTTGCCCCGATTTTTATGGATCGTTGATGAAATTTTCTGAATTCAAATCCTTGCATTACGAGACGAGGTTCAAATATTGATGGTCACTTTGTTTTTATTTTTCTTTTTTTTTTCTTTTTTTTTTTGAAAAAGG

Coding sequence (CDS)

ATGCCAGTCTTGAATTGGGGCGATTTTGGGCTTGTGAGATCAGCGGTATATAAATCGCTACTGTACTATTTGCCGCGAGGGACGTATATCGTACCAGTTGTTATTGTTCCGACTAAGGAAGGCGAAGAAAGAAGCCGAAGCAACGAAGCCTTGCGAAGAATTACTAAGCAAGAGCGAAGTGTGATACAGAGCTATGTGAAAACGAAGTCTGCTCTCAAGGAATTGGATTTGCTGAAAGAGGATGCAACTGTTTACAAATTAGTTGGCCATATTCTTGTGAAGCAAGATCTATCATGGCCAAATGAAAATGTTCGGATGAGAACTGGTTATCTCGCTGATGAATAG

Protein sequence

MPVLNWGDFGLVRSAVYKSLLYYLPRGTYIVPVVIVPTKEGEERSRSNEALRRITKQERSVIQSYVKTKSALKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE

Homology

[Close]

BLAST of Carg19266 vs. NCBI nr
Match: XP_007137462.1 (hypothetical protein PHAVU_009G128800g [Phaseolus vulgaris] >ESW09456.1 hypothetical protein PHAVU_009G128800g [Phaseolus vulgaris])

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 64  SYVKTKSALKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           S+ + +  LKELDLL+EDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 5   SFKRNELVLKELDLLREDANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 55

[Close]

BLAST of Carg19266 vs. NCBI nr
Match: KDP37967.1 (hypothetical protein JCGZ_04610 [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 72  LKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           LKELDLLKEDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 84  LKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKRIDYISAE 126

[Close]

BLAST of Carg19266 vs. NCBI nr
Match: XP_012072099.1 (prefoldin subunit 6 [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 72  LKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           LKELDLLKEDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 49  LKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKRIDYISAE 91

[Close]

BLAST of Carg19266 vs. NCBI nr
Match: XP_023003326.1 (prefoldin subunit 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-06
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 67  KTKSALKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           ++K  L+ELDLLKED+ VYKL G ILV+QD + PN NVR R GYL  E
Sbjct: 24  ESKFVLQELDLLKEDSIVYKLFGPILVRQDPAEPNANVRKRVGYLTAE 71

[Close]

BLAST of Carg19266 vs. NCBI nr
Match: XP_023003325.1 (probable prefoldin subunit 6 isoform X1 [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-06
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 67  KTKSALKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           ++K  L+ELDLLKED+ VYKL G ILV+QD + PN NVR R GYL  E
Sbjct: 24  ESKFVLQELDLLKEDSIVYKLFGPILVRQDPAEPNANVRKRVGYLTAE 71

[Close]

BLAST of Carg19266 vs. TAIR10
Match: AT1G29990.1 (prefoldin 6)

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-09
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 72  LKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           LKELDLL+EDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 48  LKELDLLEEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 90

[Close]

BLAST of Carg19266 vs. Swiss-Prot
Match: sp|Q9VW56|PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster OX=7227 GN=Pfdn6 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 6.2e-04
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 57  QERSVIQSYV-KTKSALKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           ++R+V++S + + K  L EL+LL  D  VYKL G +LVKQ+L    +NV  R  Y++ E
Sbjct: 31  KQRAVLESQLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKE 89

[Close]

BLAST of Carg19266 vs. TrEMBL
Match: tr|V7AYY6|V7AYY6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G128800g PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 64  SYVKTKSALKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           S+ + +  LKELDLL+EDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 5   SFKRNELVLKELDLLREDANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 55

[Close]

BLAST of Carg19266 vs. TrEMBL
Match: tr|A0A067KPA0|A0A067KPA0_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04610 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.0e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 72  LKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           LKELDLLKEDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 84  LKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKRIDYISAE 126

[Close]

BLAST of Carg19266 vs. TrEMBL
Match: tr|W9SEQ9|W9SEQ9_9ROSA (Prefoldin subunit 6 OS=Morus notabilis OX=981085 GN=L484_021677 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 72  LKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           LKELDLLKEDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 39  LKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 81

[Close]

BLAST of Carg19266 vs. TrEMBL
Match: tr|A0A0L9T8C9|A0A0L9T8C9_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan325s003700 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 72  LKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           LKELDLLKEDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 60  LKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 102

[Close]

BLAST of Carg19266 vs. TrEMBL
Match: tr|V7CT33|V7CT33_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G321900g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 72  LKELDLLKEDATVYKLVGHILVKQDLSWPNENVRMRTGYLADE 115
           LKELDLLKEDA VYKL+G +LVKQDL+  N NVR R  Y++ E
Sbjct: 48  LKELDLLKEDANVYKLIGPVLVKQDLAEANANVRKRIEYISAE 90

The following BLAST results are available for this feature:

BLAST of Carg19266 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_007137462.1	5.7e-06	56.86	hypothetical protein PHAVU_009G128800g [Phaseolus vulgaris] >ESW09456.1 hypothet...	[more]
KDP37967.1	7.5e-06	67.44	hypothetical protein JCGZ_04610 [Jatropha curcas]	[more]
XP_012072099.1	7.5e-06	67.44	prefoldin subunit 6 [Jatropha curcas]	[more]
XP_023003326.1	7.5e-06	62.50	prefoldin subunit 6-like isoform X2 [Cucurbita maxima]	[more]
XP_023003325.1	7.5e-06	62.50	probable prefoldin subunit 6 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg19266 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29990.1	5.2e-09	65.12	prefoldin 6	[more]

BLAST of Carg19266 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9VW56\|PFD6_DROME	6.2e-04	42.37	Probable prefoldin subunit 6 OS=Drosophila melanogaster OX=7227 GN=Pfdn6 PE=2 SV...	[more]

BLAST of Carg19266 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|V7AYY6\|V7AYY6_PHAVU	3.8e-06	56.86	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G128800g PE=4 ...	[more]
tr\|A0A067KPA0\|A0A067KPA0_JATCU	5.0e-06	67.44	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04610 PE=4 SV=1	[more]
tr\|W9SEQ9\|W9SEQ9_9ROSA	6.5e-06	67.44	Prefoldin subunit 6 OS=Morus notabilis OX=981085 GN=L484_021677 PE=4 SV=1	[more]
tr\|A0A0L9T8C9\|A0A0L9T8C9_PHAAN	6.5e-06	67.44	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan325s003700 P...	[more]
tr\|V7CT33\|V7CT33_PHAVU	6.5e-06	67.44	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G321900g PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **INTERPRO**
Term	Definition
IPR009053	Prefoldin
IPR002777	PFD_beta-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19266-RA	Carg19266-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 45..105 e-value: 4.3E-9 score: 36.2
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 39..114 e-value: 4.6E-10 score: 41.2
None	No IPR available	SUPERFAMILY	SSF46579	Prefoldin	coord: 46..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19266	CmaCh13G005560	Cucurbita maxima (Rimu)	carcmaB0411
Carg19266	CmoCh03G013880	Cucurbita moschata (Rifu)	carcmoB0408
Carg19266	CmoCh07G001120	Cucurbita moschata (Rifu)	carcmoB0410
Carg19266	Cp4.1LG10g05930	Cucurbita pepo (Zucchini)	carcpeB0413
Carg19266	Cp4.1LG19g06180	Cucurbita pepo (Zucchini)	carcpeB0415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19266	Silver-seed gourd	carcarB327
Carg19266	Silver-seed gourd	carcarB328
Carg19266	Cucumber (Gy14) v2	carcgybB0312
Carg19266	Cucumber (Gy14) v1	carcgyB0350
Carg19266	Cucurbita maxima (Rimu)	carcmaB0415
Carg19266	Cucurbita maxima (Rimu)	carcmaB0412
Carg19266	Cucurbita maxima (Rimu)	carcmaB0413
Carg19266	Cucurbita moschata (Rifu)	carcmoB0406
Carg19266	Cucurbita moschata (Rifu)	carcmoB0407
Carg19266	Cucurbita pepo (Zucchini)	carcpeB0412
Carg19266	Cucurbita pepo (Zucchini)	carcpeB0416
Carg19266	Wild cucumber (PI 183967)	carcpiB0332
Carg19266	Cucumber (Chinese Long) v2	carcuB0326
Carg19266	Cucumber (Chinese Long) v3	carcucB0332
Carg19266	Bottle gourd (USVL1VR-Ls)	carlsiB273
Carg19266	Bottle gourd (USVL1VR-Ls)	carlsiB274
Carg19266	Melon (DHL92) v3.5.1	carmeB0300
Carg19266	Melon (DHL92) v3.5.1	carmeB0301
Carg19266	Melon (DHL92) v3.6.1	carmedB0311
Carg19266	Melon (DHL92) v3.6.1	carmedB0312
Carg19266	Watermelon (Charleston Gray)	carwcgB0292
Carg19266	Watermelon (Charleston Gray)	carwcgB0293
Carg19266	Watermelon (97103) v1	carwmB0291
Carg19266	Watermelon (97103) v1	carwmB0292
Carg19266	Watermelon (97103) v2	carwmbB0307
Carg19266	Watermelon (97103) v2	carwmbB0309
Carg19266	Wax gourd	carwgoB0385
Carg19266	Wax gourd	carwgoB0386