Carg19089 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19089
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	mediator-associated protein 1-like
Location	Cucurbita_argyrosperma_scaffold_112 : 129434 .. 129742 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAGCAAAGAAAGAGGCTTTGAATGTTGAGAGTAAGATATTGCCAGAGGAGTTTCTATCTGAATTTCCATGGCTGAAAGCTTCGATCATGGTGGAGAATGATAAGTTCTGTTCAGAAGGGTTAATGCGGCTTCTAAGAGAAAGAATGCCATCAATTGGCAGTGAAAAGGCAAAGGAATTGGATGAAAAATGGAGGAAATTGGGAGAGAGTGAAGTGGAATTGTATCTGAAGAAGGTTGAATTAGTTAGGGAACAATGTAAACTAATATTGGATTCAATGGGGAAGGCAAGGAGAGCTAGCTAA

mRNA sequence

ATGGAAGCAGCAAAGAAAGAGGCTTTGAATGTTGAGAGTAAGATATTGCCAGAGGAGTTTCTATCTGAATTTCCATGGCTGAAAGCTTCGATCATGGTGGAGAATGATAAGTTCTGTTCAGAAGGGTTAATGCGGCTTCTAAGAGAAAGAATGCCATCAATTGGCAGTGAAAAGGCAAAGGAATTGGATGAAAAATGGAGGAAATTGGGAGAGAGTGAAGTGGAATTGTATCTGAAGAAGGTTGAATTAGTTAGGGAACAATGTAAACTAATATTGGATTCAATGGGGAAGGCAAGGAGAGCTAGCTAA

Coding sequence (CDS)

ATGGAAGCAGCAAAGAAAGAGGCTTTGAATGTTGAGAGTAAGATATTGCCAGAGGAGTTTCTATCTGAATTTCCATGGCTGAAAGCTTCGATCATGGTGGAGAATGATAAGTTCTGTTCAGAAGGGTTAATGCGGCTTCTAAGAGAAAGAATGCCATCAATTGGCAGTGAAAAGGCAAAGGAATTGGATGAAAAATGGAGGAAATTGGGAGAGAGTGAAGTGGAATTGTATCTGAAGAAGGTTGAATTAGTTAGGGAACAATGTAAACTAATATTGGATTCAATGGGGAAGGCAAGGAGAGCTAGCTAA

Protein sequence

MEAAKKEALNVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAKELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAS

Homology

[Close]

BLAST of Carg19089 vs. NCBI nr
Match: XP_022930845.1 (STOREKEEPER protein-like [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MEAAKKEALNVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK 60
           MEAAKKEALNVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK
Sbjct: 301 MEAAKKEALNVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK 360

Query: 61  ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAS 103
           ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAS
Sbjct: 361 ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAS 402

[Close]

BLAST of Carg19089 vs. NCBI nr
Match: XP_023531444.1 (STOREKEEPER protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.8 bits (499), Expect = 3.5e-47
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MEAAKKEALNVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK 60
           MEAAKKEALNVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK
Sbjct: 301 MEAAKKEALNVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK 360

Query: 61  ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAS 103
           ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRA+
Sbjct: 361 ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAA 402

[Close]

BLAST of Carg19089 vs. NCBI nr
Match: XP_022988806.1 (STOREKEEPER protein-like [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MEAAKKEALNVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK 60
           MEAAKKEAL+VESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK
Sbjct: 301 MEAAKKEALHVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAK 360

Query: 61  ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAS 103
           ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRA+
Sbjct: 361 ELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAA 402

[Close]

BLAST of Carg19089 vs. NCBI nr
Match: XP_022969118.1 (STOREKEEPER protein-like [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 89/105 (84.76%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MEAAKKEAL---NVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSE 60
           +EAAKKE +   NVESKIL EEFLSE+PWLKAS MVEN KFCSEGLMRL+RERMPSIGSE
Sbjct: 298 VEAAKKETVNNNNVESKILAEEFLSEYPWLKASFMVENGKFCSEGLMRLVRERMPSIGSE 357

Query: 61  KAKELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAS 103
           KAKELD+KWR LGESE+ELY+KKVELVREQCKLILDSMGKA+RAS
Sbjct: 358 KAKELDDKWRMLGESELELYVKKVELVREQCKLILDSMGKAKRAS 402

[Close]

BLAST of Carg19089 vs. NCBI nr
Match: XP_022952607.1 (STOREKEEPER protein-like [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 2.7e-39
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 0


Query: 1   MEAAKKEAL---NVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSE 60
           +EAAKKE +   NVESKIL EEFLSE+PWLKAS MVEN KFCSEGLMRL+RERMPSIGSE
Sbjct: 298 VEAAKKETVNNNNVESKILAEEFLSEYPWLKASFMVENGKFCSEGLMRLVRERMPSIGSE 357

Query: 61  KAKELDEKWRKLGESEVELYLKKVELVREQCKLILDSMGKARRAS 103
           KAKELD+KWR LGE+E+ELY+KKVELVREQCKLILDSMGKA+RAS
Sbjct: 358 KAKELDDKWRMLGENELELYVKKVELVREQCKLILDSMGKAKRAS 402

[Close]

BLAST of Carg19089 vs. Swiss-Prot
Match: sp|Q94IK2|STK_SOLTU (STOREKEEPER protein OS=Solanum tuberosum OX=4113 GN=STK PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-05
Identity = 29/80 (36.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 18  EEFLSEFPWLKASI--MVENDKFCSEGLMRLLRERMPSIGSEKAKELDEKWRKLGESEVE 77
           ++F S++P L AS+  M         G   LL+E M  I ++KAK L+EKW+KL + E  
Sbjct: 318 QDFQSKYPRLAASLETMSGLSTMYPNG-SSLLKENMSLIATDKAKVLEEKWKKLEDDEAA 377

Query: 78  LYLKKVELVREQCKLILDSM 96
           L +K+++ + E  +L++D+M
Sbjct: 378 LMVKRLDFIAEHYRLVVDAM 396

[Close]

BLAST of Carg19089 vs. TrEMBL
Match: tr|A0A1S3C0T6|A0A1S3C0T6_CUCME (mediator-associated protein 1-like OS=Cucumis melo OX=3656 GN=LOC103495567 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38
Identity = 83/93 (89.25%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 10  NVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAKELDEKWRKL 69
           NVESKILPEEFLSE+PWLKAS MVENDKF SEGLMRL+RERMPSIGSEKAKELD+KWRKL
Sbjct: 316 NVESKILPEEFLSEYPWLKASFMVENDKFRSEGLMRLVRERMPSIGSEKAKELDDKWRKL 375

Query: 70  GESEVELYLKKVELVREQCKLILDSMGKARRAS 103
           GESE+ELY+KKV+LVREQCKLILDSMGKA+R+S
Sbjct: 376 GESELELYVKKVDLVREQCKLILDSMGKAKRSS 408

[Close]

BLAST of Carg19089 vs. TrEMBL
Match: tr|A0A0A0K1N4|A0A0A0K1N4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044900 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-33
Identity = 73/93 (78.49%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 10  NVESKILPEEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAKELDEKWRKL 69
           NVESKILPEEFLSE+PWLKAS ++ENDKF SE ++R +RERMP IGSEKAKELD+KWRKL
Sbjct: 318 NVESKILPEEFLSEYPWLKASFLMENDKFRSEVVLRFVRERMPLIGSEKAKELDDKWRKL 377

Query: 70  GESEVELYLKKVELVREQCKLILDSMGKARRAS 103
           GESE+ELY+KKV+LVREQCKLI+DSM KA+R++
Sbjct: 378 GESEMELYMKKVDLVREQCKLIMDSMRKAKRST 410

[Close]

BLAST of Carg19089 vs. TrEMBL
Match: tr|A0A2P6S2H8|A0A2P6S2H8_ROSCH (Putative transcription factor GeBP family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0160351 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.8e-11
Identity = 40/83 (48.19%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 18  EEFLSEFPWLKASIMVENDKFCSEGLMRLLRERMPSIGSEKAKELDEKWRKLGESEVELY 77
           ++F S++P L  S+ + N     EGL R++ ++MPSIGS KAKELD++WRKL   E+EL 
Sbjct: 342 DDFWSKYPSLSDSLQLANCSSRWEGLERVMIQKMPSIGSSKAKELDDRWRKLQVLEMELT 401

Query: 78  LKKVELVREQCKLILDSMGKARR 101
           +KK++L+ EQ KL+LD + K+R+
Sbjct: 402 VKKLDLMHEQAKLLLDGI-KSRK 423

[Close]

BLAST of Carg19089 vs. TrEMBL
Match: tr|A0A2R6QW89|A0A2R6QW89_ACTCH (STOREKEEPER protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc13527 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.6e-10
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 14  KILPEEFLSEFPWLKASIMVENDKFCSEGL--MRLLRERMPSIGSEKAKELDEKWRKLGE 73
           K+  E F S +P LK S+ +E   + +  +     L+ERM  IGS KAK+L+EKW+ L +
Sbjct: 314 KMDEEVFWSMYPRLKESLELEESSYLTMSMAGKSFLKERMSMIGSAKAKDLEEKWKNLRK 373

Query: 74  SEVELYLKKVELVREQCKLILDSM 96
            EV LY+K+V+L++EQ K +LDSM
Sbjct: 374 EEVSLYVKRVDLIKEQAKAVLDSM 397

[Close]

BLAST of Carg19089 vs. TrEMBL
Match: tr|A0A2R6QCE2|A0A2R6QCE2_ACTCH (STOREKEEPER protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc19060 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 18  EEFLSEFPWLKASIMVENDKFC----SEGLMRLLRERMPSIGSEKAKELDEKWRKLGESE 77
           E F S +P LK S+ +E         S      L+ERM  IGS KAKEL+EKWR L E E
Sbjct: 317 EVFWSMYPRLKESMELEGTGSAYLTMSVPGKSFLKERMSMIGSAKAKELEEKWRNLREEE 376

Query: 78  VELYLKKVELVREQCKLILDSM 96
           V LYLK+V+L++EQ K +LDSM
Sbjct: 377 VSLYLKRVDLIKEQAKAVLDSM 398

The following BLAST results are available for this feature:

BLAST of Carg19089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930845.1	1.6e-47	100.00	STOREKEEPER protein-like [Cucurbita moschata]	[more]
XP_023531444.1	3.5e-47	99.02	STOREKEEPER protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_022988806.1	1.3e-46	98.04	STOREKEEPER protein-like [Cucurbita maxima]	[more]
XP_022969118.1	1.2e-39	84.76	STOREKEEPER protein-like [Cucurbita maxima]	[more]
XP_022952607.1	2.7e-39	83.81	STOREKEEPER protein-like [Cucurbita moschata]	[more]

BLAST of Carg19089 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg19089 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q94IK2\|STK_SOLTU	1.7e-05	36.25	STOREKEEPER protein OS=Solanum tuberosum OX=4113 GN=STK PE=2 SV=1	[more]

BLAST of Carg19089 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C0T6\|A0A1S3C0T6_CUCME	1.5e-38	89.25	mediator-associated protein 1-like OS=Cucumis melo OX=3656 GN=LOC103495567 PE=4 ...	[more]
tr\|A0A0A0K1N4\|A0A0A0K1N4_CUCSA	1.5e-33	78.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044900 PE=4 SV=1	[more]
tr\|A0A2P6S2H8\|A0A2P6S2H8_ROSCH	7.8e-11	48.19	Putative transcription factor GeBP family OS=Rosa chinensis OX=74649 GN=RchiOBHm...	[more]
tr\|A0A2R6QW89\|A0A2R6QW89_ACTCH	8.6e-10	45.24	STOREKEEPER protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac...	[more]
tr\|A0A2R6QCE2\|A0A2R6QCE2_ACTCH	1.9e-09	51.22	STOREKEEPER protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19089-RA	Carg19089-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19089	Silver-seed gourd	carcarB035
Carg19089	Silver-seed gourd	carcarB176
Carg19089	Silver-seed gourd	carcarB590
Carg19089	Cucumber (Gy14) v2	carcgybB0717
Carg19089	Cucumber (Gy14) v1	carcgyB0809
Carg19089	Cucumber (Gy14) v1	carcgyB0810
Carg19089	Cucurbita maxima (Rimu)	carcmaB1006
Carg19089	Cucurbita maxima (Rimu)	carcmaB1008
Carg19089	Cucurbita maxima (Rimu)	carcmaB1010
Carg19089	Cucurbita moschata (Rifu)	carcmoB0979
Carg19089	Cucurbita moschata (Rifu)	carcmoB0980
Carg19089	Cucurbita moschata (Rifu)	carcmoB0981
Carg19089	Cucurbita moschata (Rifu)	carcmoB0983
Carg19089	Cucurbita pepo (Zucchini)	carcpeB1012
Carg19089	Cucurbita pepo (Zucchini)	carcpeB1013
Carg19089	Cucurbita pepo (Zucchini)	carcpeB1015
Carg19089	Cucurbita pepo (Zucchini)	carcpeB1016
Carg19089	Wild cucumber (PI 183967)	carcpiB0755
Carg19089	Cucumber (Chinese Long) v2	carcuB0739
Carg19089	Cucumber (Chinese Long) v3	carcucB0758
Carg19089	Bottle gourd (USVL1VR-Ls)	carlsiB659
Carg19089	Melon (DHL92) v3.5.1	carmeB0715
Carg19089	Melon (DHL92) v3.6.1	carmedB0728
Carg19089	Watermelon (Charleston Gray)	carwcgB0696
Carg19089	Watermelon (97103) v1	carwmB0718
Carg19089	Watermelon (97103) v2	carwmbB0752
Carg19089	Wax gourd	carwgoB0848