Carg18780 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18780
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cytochrome c oxidase assembly protein COX19-like
Location	Cucurbita_argyrosperma_scaffold_123 : 223951 .. 226193 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCAGGTACTGTAGCATATGCGTTGTTAATACTGAGGGCGAGAGAGAGCATGATTTTTCTCTTTTTTTGGGGTGAATTTATGTTAGTTTCGAAGAGGCGAGGGATTAGAGAATTTGTATCATGTCAAATGGTTTAGTGAGTTAAGATTCTTGATTGTTGCTGGTAAAATATATATACAGTTCTGATCGGGGATCGGTTCTTTAAGGAGCTGCATTTTTAGCCTTTTTCAGACATCTATCTTATTCGGAAGAATGAAAAGATTTGAAAATAGTTGGATATGCTTGCAGAATCTCAACTCTAAATAGGAGTTTCTATCAATTGATTGAAACCAGTGAATGGATTGGGTTTGAGCAATCTGTGGGTTGACTGTGATGTTTTTATTCCATTTGCTTTACATGTCTCTTAGTTGAGCTTAGTCTTCAATGTAGAAAGAGTTGAATTACTTGATGACTATAGAGAATGATTTGAAAGGGAAAATTCATGTTTTTATTCCATTTGCTTATCAGTTGCTTAAACACGATCACCGGATTTTTAAAATTTACATAAATGACTGATAGTTTTCACTCTTTTCAATCTTATTGGGTTCAGACTAATTGTGCTTTAGTCTTTTTCGTTTTACTATAGCTTGGTATATCAGGCAATGATGGCCATCCTTTGCGTTAGCTTCTCATTGCAAGTTTTGTGATCTGTGAAAGAACTATTTAGCGGTGCTTAGCTTTGTGAGTAATATTGATATTACCTGGAATTCATATTGTTTCTTCTTTGAGTTTTAGTGGATATATAATGAAGGGATAATTTGCTAAGAGGAGTTAATGAAAACCTTCAAATGCTTTGGTGATGAAAAAGAAGATAATGATTACAACGAGCTTACATAGAATGGATATATTTTCTGTTTTAGCTAAATTGATTTGGTGAGAGCTATTGTGATCTTTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGTATTTCTTTTTAGAGCACTATTGTTTTCACCTAGGATATGTGGTTTTTGGGATTCTTTTGAAGGTTTCTTTGTGTTCATTGCTTGTTTCATGATGCATGAGCTTCATTGCAGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGTAAGACTGTTGAAATTTCTATATTATGTTTTTGTATTAATAAGTGTTGATTTGCTCTCTGTATTCTAGATTCATAAACTTTTGTTTGTGGGAACCTGGGTTATTGTTATCTTTCAATCCTGATGTTTTACACACCAATACACCACTATTAGCTGAAATGGTGGCATAAATGAATGTATATGAACAAACCCTACATCCATATACCAATACCAGTAGAACAGCAAGAGCTATCATTGTGATCTAACAAAAAAGGAAAAAAAGAGGTGCATGGTGCAAGTAGCTATAAGTTCCGCCTTTCTGAGGCTCTGCCAACTTTCCTTCCTTGTCTAGCTTAGCTACAAGCCAACTAACTCATATGCCCTGAAAACTAGGAATGAACCTTTCCCTCGTTTTCTAACAACTTCTATATACTTCATCAATCTATCATTCTACCCTTATAGCCCAAGCCTACCGCTTGTAGATATTGTCCGCTTTGGCCTGTTACGTATCGCCGTCAGACTCATACGTATACTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGTTTCGTTCCTCTTTCCAACTGACGTGGGATTTCACATTTACTCTTCCTGTCATATTCCTTTGGAGATGCAGTTTGTTCTTTTGAACGGTTTTGGTTCAACTTTGGTTACATTGGTCTAGCACAAACTAGAGAGTAACTGGAAACAGAGTGCATTATTCATTTCTTTTCCTCTTATCTTACGGCAAATAAGGGGGACACACTCGATTGATATTGTTATGAATACTTGCTACCAAAATTATTGGTCGTAGTTTGTGTGTGCTACCCATCCAGTTTCTTTTCTCATGGGTTTGAGCTTTGCTATTTCTTCTCTAACACAGCTCGGCTGTATGAGTATGGTCATTCATGAGATTTCATTGGGAACTTGCAGGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA

mRNA sequence

ATGAGTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA

Coding sequence (CDS)

ATGAGTGCAGGTGGTTCCTTTGGGGGGAATAGAGGATTGAGACCGGTACCCCCAGAAAAAGGAGTCTTCCCTTTGGATCATATGCACCTCTGCGACCTGGAGAAGAAAGAATACCTCAATTGTCTTAAAACGTCTGGTCACCAATCTGAAAAATGCAGGCACTTATCAAAAAAATACCTTCAATGTCGTATGGAAAAGAATTTAATGGCAAAGCAAGACATGGAAGAACTAGGATTCGGGAATTTGAGTCAGCCCAGTTTGTCTGGCGATAAATTGGAACAAGTTTAA

Protein sequence

MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV

Homology

[Close]

BLAST of Carg18780 vs. NCBI nr
Match: XP_022964209.1 (cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita moschata] >XP_023513825.1 cytochrome c oxidase assembly protein COX19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 1.9e-47
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          QCRMEKNLMAKQDM ELGFGNLSQPSLSGDKLEQV
Sbjct: 61 QCRMEKNLMAKQDMAELGFGNLSQPSLSGDKLEQV 95

[Close]

BLAST of Carg18780 vs. NCBI nr
Match: XP_023000411.1 (cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 7.3e-47
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          QCRMEKNLMAKQDM ELGFGNLSQPSL GDKLEQV
Sbjct: 61 QCRMEKNLMAKQDMAELGFGNLSQPSLPGDKLEQV 95

[Close]

BLAST of Carg18780 vs. NCBI nr
Match: XP_022964208.1 (cytochrome c oxidase assembly protein COX19-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 8.1e-46
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 4   GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 63
           GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR
Sbjct: 13  GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 72

Query: 64  MEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
           MEKNLMAKQDM ELGFGNLSQPSLSGDKLEQV
Sbjct: 73  MEKNLMAKQDMAELGFGNLSQPSLSGDKLEQV 104

[Close]

BLAST of Carg18780 vs. NCBI nr
Match: XP_023000410.1 (cytochrome c oxidase assembly protein COX19-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 3.1e-45
Identity = 90/92 (97.83%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 4   GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 63
           GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR
Sbjct: 13  GGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCR 72

Query: 64  MEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
           MEKNLMAKQDM ELGFGNLSQPSL GDKLEQV
Sbjct: 73  MEKNLMAKQDMAELGFGNLSQPSLPGDKLEQV 104

[Close]

BLAST of Carg18780 vs. NCBI nr
Match: XP_004141761.1 (PREDICTED: cytochrome c oxidase assembly protein COX19-like [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 1.2e-44
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGH+SEKCRHLSK+YL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHKSEKCRHLSKRYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          +CRMEKNLMAKQDM ELGFGNLSQ +LSGDKLEQ+
Sbjct: 61 ECRMEKNLMAKQDMTELGFGNLSQANLSGDKLEQL 95

[Close]

BLAST of Carg18780 vs. TAIR10
Match: AT1G69750.1 (cytochrome c oxidase 19-2)

HSP 1 Score: 149.4 bits (376), Expect = 1.1e-36
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MS GG+FGGNRGLRP+PPEKG+FPLDH+H CD EKKEYL CLK+S H+SE+CRHLSKKYL
Sbjct: 1  MSTGGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDK 92
          QCRM KNLMAKQDM ELGF  + +   + DK
Sbjct: 61 QCRMAKNLMAKQDMAELGFSGVKELDSTEDK 91

[Close]

BLAST of Carg18780 vs. TAIR10
Match: AT1G66590.2 (cytochrome c oxidase 19-1)

HSP 1 Score: 147.1 bits (370), Expect = 5.4e-36
Identity = 66/89 (74.16%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 3   AGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQC 62
           AGG+FGGNRGLRP+PPEKG+FPLDH+H CD EKKEYL CLK+S H+SE+CRHLSKKYLQC
Sbjct: 18  AGGAFGGNRGLRPIPPEKGIFPLDHLHECDAEKKEYLGCLKSSAHKSEQCRHLSKKYLQC 77

Query: 63  RMEKNLMAKQDMEELGFGNLSQPSLSGDK 92
           RM KNLMAKQDM ELGF  + +   + DK
Sbjct: 78  RMAKNLMAKQDMAELGFSGVKELDSTEDK 106

[Close]

BLAST of Carg18780 vs. Swiss-Prot
Match: sp|A8E4L1|COX19_BOVIN (Cytochrome c oxidase assembly protein COX19 OS=Bos taurus OX=9913 GN=COX19 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.3e-15
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MS   +F G++  +P PP+KG FPLDH   C   K++++ CL+ +  ++  CR+ SK+YL
Sbjct: 1  MSTAMNF-GSKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNL 83
          +CRME+ LMA++ +E+LGFG+L
Sbjct: 61 ECRMERQLMAQEPLEKLGFGDL 81

[Close]

BLAST of Carg18780 vs. Swiss-Prot
Match: sp|Q4P821|COX19_USTMA (Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=COX19 PE=3 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 6.6e-15
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 17 PPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQCRMEKNLMAKQDMEE 76
          PPE+G FPLDH   C    +EY+NC+K + + + KCRHLS+ YLQCRM+K LM + +M+ 
Sbjct: 16 PPERGSFPLDHDGECKSVMQEYMNCIKYNRNDNGKCRHLSRAYLQCRMDKGLMEQDNMDN 75

Query: 77 LGFGNLSQPSLSGDK 92
          LGF ++  P+ +  K
Sbjct: 76 LGFKDVVDPASTETK 90

[Close]

BLAST of Carg18780 vs. Swiss-Prot
Match: sp|Q49B96|COX19_HUMAN (Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens OX=9606 GN=COX19 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-14
Identity = 36/83 (43.37%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MS   +F G +  +P PP+KG FPLDH+  C   K++++ CL  +  ++  CR  SK+YL
Sbjct: 1  MSTAMNF-GTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLS 84
          +CRME+ LM ++ +E+LGFG+L+
Sbjct: 61 ECRMERKLMLQEPLEKLGFGDLT 82

[Close]

BLAST of Carg18780 vs. Swiss-Prot
Match: sp|O14056|COX19_SCHPO (Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox19 PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-14
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 6  SFGGNRGLRPV----PPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYLQ 65
          SFG   G  P+    PPE+G FPLDH   C    K+YL C+K      E+CR L+KKYLQ
Sbjct: 2  SFGAAGGSLPMTTREPPERGSFPLDHFGECTHVMKQYLECIKVKRENQEECRLLAKKYLQ 61

Query: 66 CRMEKNLMAKQDMEELGF 80
          CRM+  L  K DM+ LGF
Sbjct: 62 CRMDTGLFGKDDMKNLGF 79

[Close]

BLAST of Carg18780 vs. Swiss-Prot
Match: sp|Q8K0C8|COX19_MOUSE (Cytochrome c oxidase assembly protein COX19 OS=Mus musculus OX=10090 GN=Cox19 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.5e-14
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MS   +F G +  +P PP+KG FPLDH   C   K++++ CL+   +++  CR+ SK+YL
Sbjct: 1  MSTAMNF-GTKSFQPRPPDKGSFPLDHFGECKSFKEKFMRCLRDKNYENALCRNESKEYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQ 85
           CRM++ LMA + +E+LGF +L +
Sbjct: 61 MCRMQRQLMAPEPLEKLGFRDLME 83

[Close]

BLAST of Carg18780 vs. TrEMBL
Match: tr|A0A1S3CGW0|A0A1S3CGW0_CUCME (cytochrome c oxidase assembly protein COX19-like OS=Cucumis melo OX=3656 GN=LOC103500603 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.9e-44
Identity = 87/95 (91.58%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGH+SEKCRHLSKKYL
Sbjct: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHKSEKCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQV 96
          +CRMEKNLMAKQDM ELGFG++SQ +LSGDKLEQ+
Sbjct: 61 ECRMEKNLMAKQDMTELGFGSVSQANLSGDKLEQL 95

[Close]

BLAST of Carg18780 vs. TrEMBL
Match: tr|A0A0V0GNZ6|A0A0V0GNZ6_SOLCH (Putative cytochrome c oxidase assembly protein COX19-like OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.3e-38
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLK++GH+SE+CRHLS+KYL
Sbjct: 1  MSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSAGHKSEECRHLSRKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFG-NLSQPSLSGDKLEQ 95
          +CRMEKNLMAKQDM ELGFG N+   + S DK EQ
Sbjct: 61 ECRMEKNLMAKQDMSELGFGKNVDAGTKSEDKTEQ 95

[Close]

BLAST of Carg18780 vs. TrEMBL
Match: tr|A0A2P4L3B0|A0A2P4L3B0_QUESU (Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_48664 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.0e-38
Identity = 77/94 (81.91%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYL+CLK+SGH SE CRHLSKKYL
Sbjct: 1  MSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLSCLKSSGHNSETCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQ 95
          QCRMEKNLMAKQDM ELGFG  S    SG  + +
Sbjct: 61 QCRMEKNLMAKQDMSELGFGKESNMEASGQNVNE 94

[Close]

BLAST of Carg18780 vs. TrEMBL
Match: tr|M1CIA6|M1CIA6_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102594939 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 76/94 (80.85%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLK+SGH+S+ CRHLSKKYL
Sbjct: 1  MSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSSGHKSDNCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQ 95
           CRMEKNLMAKQDM ELGFG       S +++EQ
Sbjct: 61 VCRMEKNLMAKQDMSELGFGKNYDAETSSEEMEQ 94

[Close]

BLAST of Carg18780 vs. TrEMBL
Match: tr|K4DFC6|K4DFC6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 76/94 (80.85%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MSAGGSFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKTSGHQSEKCRHLSKKYL 60
          MSAGG+FGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLK+SGH+S+ CRHLSKKYL
Sbjct: 1  MSAGGAFGGNRGLRPVPPEKGVFPLDHMHLCDLEKKEYLNCLKSSGHKSDNCRHLSKKYL 60

Query: 61 QCRMEKNLMAKQDMEELGFGNLSQPSLSGDKLEQ 95
           CRMEKNLMAKQDM ELGFG       S +++EQ
Sbjct: 61 VCRMEKNLMAKQDMSELGFGKNYDAETSSEEMEQ 94

The following BLAST results are available for this feature:

BLAST of Carg18780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964209.1	1.9e-47	98.95	cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita moschata]...	[more]
XP_023000411.1	7.3e-47	97.89	cytochrome c oxidase assembly protein COX19-like isoform X2 [Cucurbita maxima]	[more]
XP_022964208.1	8.1e-46	98.91	cytochrome c oxidase assembly protein COX19-like isoform X1 [Cucurbita moschata]	[more]
XP_023000410.1	3.1e-45	97.83	cytochrome c oxidase assembly protein COX19-like isoform X1 [Cucurbita maxima]	[more]
XP_004141761.1	1.2e-44	92.63	PREDICTED: cytochrome c oxidase assembly protein COX19-like [Cucumis sativus]	[more]

BLAST of Carg18780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69750.1	1.1e-36	73.63	cytochrome c oxidase 19-2	[more]
AT1G66590.2	5.4e-36	74.16	cytochrome c oxidase 19-1	[more]

BLAST of Carg18780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A8E4L1\|COX19_BOVIN	2.3e-15	45.12	Cytochrome c oxidase assembly protein COX19 OS=Bos taurus OX=9913 GN=COX19 PE=3 ...	[more]
sp\|Q4P821\|COX19_USTMA	6.6e-15	48.00	Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGS...	[more]
sp\|Q49B96\|COX19_HUMAN	1.5e-14	43.37	Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens OX=9606 GN=COX19 PE=...	[more]
sp\|O14056\|COX19_SCHPO	2.5e-14	50.00	Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Schizosaccharomyce...	[more]
sp\|Q8K0C8\|COX19_MOUSE	9.5e-14	41.67	Cytochrome c oxidase assembly protein COX19 OS=Mus musculus OX=10090 GN=Cox19 PE...	[more]

BLAST of Carg18780 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGW0\|A0A1S3CGW0_CUCME	2.9e-44	91.58	cytochrome c oxidase assembly protein COX19-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A0V0GNZ6\|A0A0V0GNZ6_SOLCH	5.3e-38	82.11	Putative cytochrome c oxidase assembly protein COX19-like OS=Solanum chacoense O...	[more]
tr\|A0A2P4L3B0\|A0A2P4L3B0_QUESU	7.0e-38	81.91	Cytochrome c oxidase assembly protein cox19, mitochondrial OS=Quercus suber OX=5...	[more]
tr\|M1CIA6\|M1CIA6_SOLTU	1.2e-37	80.85	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102594939 PE=4 SV=1	[more]
tr\|K4DFC6\|K4DFC6_SOLLC	1.2e-37	80.85	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF
IPR010625	CHCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18780-RA	Carg18780-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010625	CHCH	PFAM	PF06747	CHCH	coord: 31..65 e-value: 2.5E-8 score: 33.7
None	No IPR available	PANTHER	PTHR21107:SF2	CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19	coord: 1..86
None	No IPR available	PANTHER	PTHR21107	FAMILY NOT NAMED	coord: 1..86
None	No IPR available	PROSITE	PS51808	CHCH	coord: 28..70 score: 13.799
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	SSF47072	Cysteine alpha-hairpin motif	coord: 27..63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18780	CmaCh08G007160	Cucurbita maxima (Rimu)	carcmaB1046
Carg18780	CmoCh08G006800	Cucurbita moschata (Rifu)	carcmoB1018
Carg18780	Cp4.1LG17g05560	Cucurbita pepo (Zucchini)	carcpeB1051

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18780	Carg09507	Silver-seed gourd	carcarB596

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18780	Watermelon (97103) v2	carwmbB0781
Carg18780	Watermelon (97103) v2	carwmbB0780
Carg18780	Watermelon (97103) v2	carwmbB0782
Carg18780	Wax gourd	carwgoB0879
Carg18780	Wax gourd	carwgoB0883
Carg18780	Silver-seed gourd	carcarB045
Carg18780	Silver-seed gourd	carcarB143
Carg18780	Silver-seed gourd	carcarB234
Carg18780	Cucumber (Gy14) v2	carcgybB0739
Carg18780	Cucumber (Gy14) v2	carcgybB0742
Carg18780	Cucumber (Gy14) v1	carcgyB0839
Carg18780	Cucurbita maxima (Rimu)	carcmaB1043
Carg18780	Cucurbita maxima (Rimu)	carcmaB1044
Carg18780	Cucurbita maxima (Rimu)	carcmaB1045
Carg18780	Cucurbita moschata (Rifu)	carcmoB1014
Carg18780	Cucurbita moschata (Rifu)	carcmoB1015
Carg18780	Cucurbita moschata (Rifu)	carcmoB1017
Carg18780	Cucurbita pepo (Zucchini)	carcpeB1049
Carg18780	Cucurbita pepo (Zucchini)	carcpeB1052
Carg18780	Cucurbita pepo (Zucchini)	carcpeB1053
Carg18780	Cucurbita pepo (Zucchini)	carcpeB1054
Carg18780	Cucurbita pepo (Zucchini)	carcpeB1055
Carg18780	Wild cucumber (PI 183967)	carcpiB0777
Carg18780	Wild cucumber (PI 183967)	carcpiB0780
Carg18780	Cucumber (Chinese Long) v2	carcuB0763
Carg18780	Cucumber (Chinese Long) v3	carcucB0780
Carg18780	Cucumber (Chinese Long) v3	carcucB0783
Carg18780	Bottle gourd (USVL1VR-Ls)	carlsiB684
Carg18780	Bottle gourd (USVL1VR-Ls)	carlsiB685
Carg18780	Melon (DHL92) v3.5.1	carmeB0742
Carg18780	Melon (DHL92) v3.5.1	carmeB0741
Carg18780	Melon (DHL92) v3.6.1	carmedB0754
Carg18780	Melon (DHL92) v3.6.1	carmedB0755
Carg18780	Watermelon (Charleston Gray)	carwcgB0722
Carg18780	Watermelon (Charleston Gray)	carwcgB0725
Carg18780	Watermelon (97103) v1	carwmB0743
Carg18780	Watermelon (97103) v1	carwmB0746