Carg18735 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18735
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	NAD(P)H dehydrogenase subunit 48
Location	Cucurbita_argyrosperma_scaffold_139 : 409072 .. 413136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGTTGGTTCATTTTCTCGCCAATAATTGACCTAGAAATTGATAGAACAATATTGCTAGTGATTCTACCATGTATGAAAGACTTCAAATATTGGATCCCACTTCGATTTAGAACTTTGATGATACTTAGAAACTTTGATAGCCATATTAGTGATTTGTTAGGAGATCTCTTAGAAAAATATTTAGTGCCCATTTGAAACAATGGTTTCATTGTTGTTGCAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTGAGAATATTTTATACTTTTGTTTTGAATCTGTACAAAAGTTTTCATATAAGCTTTTGAGTTTAGTATTAGTATGACATAGCATTGGAGTGGAAGCTACTTTATGTAACGGCCCAAACTCACCGCTAGTAGCTATTGTCCTCTTTGAGTTTTCCCTCAAGGTTTTTAAAACGCGTTTGTTAGGGGAGAGGTTTCCACACCCTTATAAAGAATATTTCATTCTCCTCCCTAACTGATGTGAGATCTCACAATCCACCTCCCTTCGGGGCCCAGCGTCCTCGTTGGCACTTTTTCCCTTCTCCAATCGATGTAGGACCCTCCAATCCACACCCCCTTCGGGGCTAGTGTCCTTGCTTGCACACCGCCTCGTGTCCATCCCCTTTCAGGACTCAGCTTCCTTGCTGGCACACAGCTTGGTGTCTGGCTTTGATATCATTTGTAACAGCCCAAGCCACCGCTAGTAGATATTACCTCTTTGGGTTTTCCCTTCTCGGGTCTCCCCTCAAAGTTTTTAAAACACGTCTACTAGGGAGAGGTTTCCACACTTTTATCAAAAATGTTTTGTTCTCTTCCCCAATCGATGTGGGATCTCACACTTTATCTGTTTAAGTTCTTAGCAATCTCGTTTTCTTTTCAGTTTATACTGATAGTCACTCGTTGCGTTCTTGTGCTTATTTCCTAAGCCACAAGGAGGATGTCAAGAATGTATATAAAAGATTACATACTCCATAACTCATCAATATAAGTTATTACTGTATAGTATTAGTTTGATATAGGGTGCAGTTTTTGCCACTAAATGAGTGAAGTATGGCTTTTATGAGAGGACACTAAGTAATGTTCTACGTGAAAGCTGAAGAACAAAATAGAAATAGCAAGCTCAAACTTCTACTTTTTTGATGCCTTGAAGGCTGATTTTCATGATTTAGGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGTAGGTATTATGTCAATATCTTGCTTTATCAGAAAAAAAATGATGAACTATAGGCAACAGTAACATAATGCAGCTTTTTCTTTCATTATTTTCTGATGATAACACTTGTTGAATCTAAACACAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGGTACTCATAACTATCCATCTTTCTCTTTTGAGTATAGAAGAGTGAACTGTGAAAAGGATGAAAAAACAGTTTTAAGTAAGAAAGAAAGGATTGAAGAAAGGGAAATTAATGTTTTGAAGAAGTTGATAAATGTGAGATCTCACATTGGCTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACGTCTCCCTAGTAGACGTGTTTTAAAACTGTGAGGGAAAGCCCAAAGAGGATAATATGTACTAGCGGTGGACTTGGACTGTTACAAATGACAAATGGTATCAGAGCCAAGCATCGAACGGTGTGCTAGTGAGAACGTTGGGCCCCGCAAGGGGTGGATTGTGAGATCCGACATTGGTTGGAGAGGGGAATGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCTTAGTAGACGTGTTTTAAAAACCTTGAGGGAAAGCCTAAAGAGGATAATATCGGTTCGTGGTGGGCTTGGGCTATTACAAATGGTATCAAAGCTAGGCACCGAACGGTGTGCCAGCAAGGATGCTAGGCCCTGCTGGGGGTGGGTTGTGAGATCTCACATTAGTTGGAGAGGGGAACGAAACATTCCTTGTAAAGGTGTGGAAGCCTCTCTCTAGTAGACATGTTTTAAAGGTGTGGAAGCCTCTCTCTAGTACGAAACATTCTTTGTAAAGGTGTGGAAGCCTCTCTCTAGTAGACATGTTTTAAAACTTTGAGAGAAATCCTAAAAAATGATAATATTTGCTAGCGGTGGGTTTTGGGCTATTACAAATGGTACCAGAGCCAAGCACTGAACGGTGTGTCATCGAAGATGCTGGGCTCCGTAGGGAGTGGATTGTGAGATCCCACCTTGGTTGGAGAAGCACTCCTTATAAAAGTGTGGAAACCTCTCTCTAGTAGAGACGCGTTTTAAAACCTTGAGAGAAAGTCCAAGATAATATCTTCTAGCTGTGAGCTTGGGCTGTTAGAATAAAAGTGATACTTAAAAGCACACCATGCTTAACTTCAATCTGCAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGGTCTTGATCTGTTTCTCCTTCCCAGAAACTCAATAGTTTGCTTACTGATCTTAAAATCTCCCATTTGCTAGTAGTATGAAAAGAACAGTGCTTGATATGCATCTATAATTCCAATGTGTTTGCAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGACATTACAGATTTTCTTACCCACTTTGTGCTTATCATCATGATAGTTACCGTCAGTTGTATATCAAAGCATTGGCAATGAAGAGGGTAATTGTATATTTTCTGTTTGGTCTTAACTCTTTTGAAAGCTCCCTTTCCTTACTCTTACTCTATCTCAGCTTTCGGTCCAAATTTCATTTGAACCTCGATCCGTTAGAGCTGGTGAGAAAAATCTAAAGTTCGTTCTTTCTA

mRNA sequence

ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGACATTACAGATTTTCTTACCCACTTTGTGCTTATCATCATGATAGTTACCGTCAGTTGTATATCAAAGCATTGGCAATGAAGAGGGTAATTGTATATTTTCTGTTTGGTCTTAACTCTTTTGAAAGCTCCCTTTCCTTACTCTTACTCTATCTCAGCTTTCGGTCCAAATTTCATTTGAACCTCGATCCGTTAGAGCTGGTGAGAAAAATCTAAAGTTCGTTCTTTCTA

Coding sequence (CDS)

ATGGCTACTTCTTCTCTTCCCACCAAATCCCTCCCGCCATTTTTGCCGGCATCAAGCTTTCCACCTTCTTCTCCTTCAACCCACTTCACTAAGCCGCCATTCCTAGCCCCACCTGACATTTCTCTCTCCACCTCTTCCTCATCGCCCTCTAAACTTCATATTCCCAGTTGTGCCAAGAAGAATCCCTGGCTCGACCCTTTCGACGATGGCGATGATCCGGACATGGAATACGGCTCTCTCTTCGCCGATGGGAAGCAGGAAGAGGACCCTCGCCCACCGGACAATCCGAACAATCCGTATGGGTTCTTGAAATTTCCTCAGGGTTATATGGTGGAAGTTGCTTCTCTAGGTCTTAAACTCCGGGGAGATGTACGGCGGTGCTGCTGCGTGATTTCCGGCGGGGTCTATGAAAACCTACTCTTCTTTCCGGCCATTCAATTGCTCAAGGATCGGTACCCGGGTGTTCAAATCGACGTGGTGGCTTCGGCGAGGGGTAAACAGACTTATGAATTGAATAAGAATGTGCGATGGTCTAATGTCTATGATCCGGATGATTATTTTCCTGAACCGGCCGATTACACTGACATGGTTGGATTGCTCAAGGGTAGATATTATGATATGGTGTTGTCAACAAAGCTAGCAGGGATTGGGCATGCGGCGTTTTTGTTCATGACAACAGCCAGAGACAGAGTTAGCTACATTTACCCTGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCTAATCTTTCCGAGGGAGGGTTCAACATGTATCATCAAATGGTTGATTGGTTAGGGAGACCATTTCGTAGCGTTCCCAGGCATCCCGTTCCTCCGCTCAAAGTTTCGATTTCAAGAAAATTGAAGGAGATTGTAAAGGAAAAGTATAATCAAGCAGGTGTTGAGAAAGGAAAATATATTGTGATTCATGGAATAGAATCAGATTCAAAAGCCTCAATGCAGTCCAAAGGTGATACTGATAGCTTGCTACCCATTCAAGCCTGGGCTGAAATAGCCAATGCTATAAGGGGATTCAAGCCAGTTTTTGTCATTCCGCACGAAAAAGAAAGGGAAAACGTCGAGGAGGAGGTCGGAGATAACGCAAGCATCGTATTTATCACTACCCCAGGACAGTTAGCTGCTCTCATTAACGACTCGGCTGGTGTAATAGCTACCAACACAGCTGCGATCCAACTCGCCATTGCTCGCGAAAAACCAAGCATTGCATTGTTTTGCTCTGAAGAGAAAGCAAAACTATTTGTTCCGGACGCCGAAGCAAAGAGATGCATCGCAGTTTCATCGACAACGGGACGACTAATCGACATCGATATGGGCACAGTTAAAAGGGCGATTCAGAGCTTTGAAGTGCCTCTAGCTCTTGCTTTTCAGTGA

Protein sequence

MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKKNPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ

Homology

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_022953552.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 909.4 bits (2349), Expect = 4.9e-261
Identity = 469/471 (99.58%), Postives = 470/471 (99.79%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPD+EAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_022992479.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 905.6 bits (2339), Expect = 7.1e-260
Identity = 466/471 (98.94%), Postives = 468/471 (99.36%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKP+SSNLSEGGFNMYHQM DWLGRPFRSVPRHPVPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCIAVSS TGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_023548446.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 903.7 bits (2334), Expect = 2.7e-259
Identity = 467/471 (99.15%), Postives = 468/471 (99.36%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSP KLHIPSCAKK
Sbjct: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPCKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRH VPPLKVSISRKLKEIV
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHLVPPLKVSISRKLKEIV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVP+AEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPEAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_022145001.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Momordica charantia])

HSP 1 Score: 845.1 bits (2182), Expect = 1.1e-241
Identity = 420/470 (89.36%), Postives = 437/470 (92.98%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPF               TKP FLAPPDIS  +++ SP K HIP+ AKK
Sbjct: 3   MATSSLPTKSLPPFLPSSASPPSSPSTHFTKPLFLAPPDISPLSTTPSPPKSHIPT-AKK 62

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPW DPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 63  NPWFDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 122

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 123 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 182

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLK RYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 183 YDPDDYFPEPAEYTDMVGLLKSRYYDMVLSTKLAGVGHAVFLFMTTARDRVSYIYPDVNA 242

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLS+TFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKV ISRKLKE+V
Sbjct: 243 AGAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVLISRKLKEVV 302

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           +EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIA+ IRGFKPVFVIP
Sbjct: 303 EEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIASTIRGFKPVFVIP 362

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERENVEEEVGD+A I+FITTPGQLAALINDSAG+IATNTAAIQLAIAREKPSIALF 
Sbjct: 363 HEKERENVEEEVGDDAGILFITTPGQLAALINDSAGLIATNTAAIQLAIAREKPSIALFS 422

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAF 471
           S+EKAKLFVPDAE+KRCI VSS TGRLIDIDMGTVKRAIQSFEVPLALAF
Sbjct: 423 SDEKAKLFVPDAESKRCITVSSATGRLIDIDMGTVKRAIQSFEVPLALAF 471

[Close]

BLAST of Carg18735 vs. NCBI nr
Match: XP_008461180.1 (PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis melo])

HSP 1 Score: 843.6 bits (2178), Expect = 3.3e-241
Identity = 435/471 (92.36%), Postives = 455/471 (96.60%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKP FL+P  ISLSTS    SKL IP C+KK
Sbjct: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPLFLSPLLISLSTS----SKLRIP-CSKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPW DPFDDG+DP+MEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVG+LKGRYYDMVLSTKLAGIGHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLS+TFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKE++
Sbjct: 241 AGAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVI 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
            EKY +AGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN IRGFKPVFVIP
Sbjct: 301 AEKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
            EKERENVEEEVG+NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 REKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCI VSSTTGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Carg18735 vs. TAIR10
Match: AT1G15980.1 (NDH-dependent cyclic electron flow 1)

HSP 1 Score: 654.4 bits (1687), Expect = 5.2e-188
Identity = 327/449 (72.83%), Postives = 372/449 (82.85%), Query Frame = 0


Query: 33  PFLAPPDISLS------------TSSSSPSKLHIPSCAKKNPWLDPFDDGDDPDMEYGSL 92
           PF   P  S S            TS SS   +++    K NPWLDPFD G+DPD EYGSL
Sbjct: 14  PFFKTPPFSTSKPLVFLNFQTRLTSRSSDVSVNLKK--KNNPWLDPFDSGEDPDNEYGSL 73

Query: 93  FADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCCCVISGGVYENLL 152
           FADGKQ+EDPRPPDN    YGFLKFP+GY VE+ASL LK+RGDVRRCCCVISGGVYENLL
Sbjct: 74  FADGKQDEDPRPPDNXXXXYGFLKFPKGYTVELASLPLKIRGDVRRCCCVISGGVYENLL 133

Query: 153 FFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFPEPADYTDMVGLL 212
           FFP IQL+KDRYPGVQ+D++ + RGKQTYELNKNVRW+NVYDPDD++PEPA+YTDM+GLL
Sbjct: 134 FFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLL 193

Query: 213 KGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPDSSNLSE 272
           KGRYYDMVLSTKLAG+GHAAFLFMTTARDRVSYIYP+VN+AGAGL LS+TF  +++NLSE
Sbjct: 194 KGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSE 253

Query: 273 GGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAGVEKGKYIVIHGI 332
            G++MY QM DWLGRPFRSVPR P+ PL+VSISRK+KE+V  KY  AG   GK+IVIHGI
Sbjct: 254 LGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGI 313

Query: 333 ESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENVEEEVGDNASIVF 392
           ESDSKASMQSKGD DSLL ++ WA+I   +RGFKPVFVIPHEKERENVE+ VGD+ SIVF
Sbjct: 314 ESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVF 373

Query: 393 ITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLFVPDAEAK-RCIA 452
           ITTPGQLAALINDSAGVIATNTAAIQLA AR+KP I LF SEEK KLFVP AE K  C+ 
Sbjct: 374 ITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLFVPYAEEKSNCVI 433

Query: 453 VSSTTGRLIDIDMGTVKRAIQSFEVPLAL 469
           ++S TG+L DID+GTVK A+Q FE  LAL
Sbjct: 434 IASKTGKLADIDIGTVKNAMQVFEGSLAL 460

[Close]

BLAST of Carg18735 vs. Swiss-Prot
Match: sp|Q9S9N6|PNSB1_ARATH (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1)

HSP 1 Score: 654.4 bits (1687), Expect = 9.3e-187
Identity = 327/449 (72.83%), Postives = 372/449 (82.85%), Query Frame = 0


Query: 33  PFLAPPDISLS------------TSSSSPSKLHIPSCAKKNPWLDPFDDGDDPDMEYGSL 92
           PF   P  S S            TS SS   +++    K NPWLDPFD G+DPD EYGSL
Sbjct: 14  PFFKTPPFSTSKPLVFLNFQTRLTSRSSDVSVNLKK--KNNPWLDPFDSGEDPDNEYGSL 73

Query: 93  FADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKLRGDVRRCCCVISGGVYENLL 152
           FADGKQ+EDPRPPDN    YGFLKFP+GY VE+ASL LK+RGDVRRCCCVISGGVYENLL
Sbjct: 74  FADGKQDEDPRPPDNXXXXYGFLKFPKGYTVELASLPLKIRGDVRRCCCVISGGVYENLL 133

Query: 153 FFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYDPDDYFPEPADYTDMVGLL 212
           FFP IQL+KDRYPGVQ+D++ + RGKQTYELNKNVRW+NVYDPDD++PEPA+YTDM+GLL
Sbjct: 134 FFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLL 193

Query: 213 KGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPDSSNLSE 272
           KGRYYDMVLSTKLAG+GHAAFLFMTTARDRVSYIYP+VN+AGAGL LS+TF  +++NLSE
Sbjct: 194 KGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSE 253

Query: 273 GGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIVKEKYNQAGVEKGKYIVIHGI 332
            G++MY QM DWLGRPFRSVPR P+ PL+VSISRK+KE+V  KY  AG   GK+IVIHGI
Sbjct: 254 LGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGI 313

Query: 333 ESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIPHEKERENVEEEVGDNASIVF 392
           ESDSKASMQSKGD DSLL ++ WA+I   +RGFKPVFVIPHEKERENVE+ VGD+ SIVF
Sbjct: 314 ESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVF 373

Query: 393 ITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFCSEEKAKLFVPDAEAK-RCIA 452
           ITTPGQLAALINDSAGVIATNTAAIQLA AR+KP I LF SEEK KLFVP AE K  C+ 
Sbjct: 374 ITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEKGKLFVPYAEEKSNCVI 433

Query: 453 VSSTTGRLIDIDMGTVKRAIQSFEVPLAL 469
           ++S TG+L DID+GTVK A+Q FE  LAL
Sbjct: 434 IASKTGKLADIDIGTVKNAMQVFEGSLAL 460

[Close]

BLAST of Carg18735 vs. TrEMBL
Match: tr|A0A1S3CEK1|A0A1S3CEK1_CUCME (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499839 PE=4 SV=1)

HSP 1 Score: 843.6 bits (2178), Expect = 2.2e-241
Identity = 435/471 (92.36%), Postives = 455/471 (96.60%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKP FL+P  ISLSTS    SKL IP C+KK
Sbjct: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPLFLSPLLISLSTS----SKLRIP-CSKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPW DPFDDG+DP+MEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLKL
Sbjct: 61  NPWFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVG+LKGRYYDMVLSTKLAGIGHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLS+TFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKE++
Sbjct: 241 AGAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVI 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
            EKY +AGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN IRGFKPVFVIP
Sbjct: 301 AEKYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
            EKERENVEEEVG+NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 REKERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVPDAEAKRCI VSSTTGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Carg18735 vs. TrEMBL
Match: tr|A0A0A0K6S9|A0A0A0K6S9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1)

HSP 1 Score: 833.9 bits (2153), Expect = 1.7e-238
Identity = 428/471 (90.87%), Postives = 451/471 (95.75%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKP FL+PP ISLSTS    SK  IP C+KK
Sbjct: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPFFLSPPLISLSTS----SKFQIP-CSKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPW DPFDDG+DP+MEYGSL++DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL
Sbjct: 61  NPWFDPFDDGEDPEMEYGSLYSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCCVISGGVYENLLFFP IQLLKDRYPGVQIDVV SARGKQT+ELNKNVRWSNV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVTSARGKQTFELNKNVRWSNV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDMVGLLKGRYYDMVLSTKLAG+GHA FLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGLFLS+TFKP+SSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSI+RKLKE++
Sbjct: 241 AGAGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVI 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
            EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIA  IRGFKPVFVIP
Sbjct: 301 AEKYRKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIAKCIRGFKPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HEKERE+VEEEVG+NASIVFITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERESVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 472
           SEEKAKLFVP+AEAKRCI VSS TGRLIDIDMGT+K+AIQSFEVPLALAFQ
Sbjct: 421 SEEKAKLFVPNAEAKRCITVSSATGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Carg18735 vs. TrEMBL
Match: tr|A0A2P4N2X5|A0A2P4N2X5_QUESU (Photosynthetic ndh subunit of subcomplex b 1, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_06232 PE=4 SV=1)

HSP 1 Score: 727.6 bits (1877), Expect = 1.7e-206
Identity = 363/481 (75.47%), Postives = 405/481 (84.20%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISL---------STSSSSPSK 60
           MAT+SL  KSL PF               T PP    P  S          S  +  P+ 
Sbjct: 1   MATTSLHPKSLSPF--------------LTNPPSFPSPHFSKLSFLHPSHHSHCTKRPNL 60

Query: 61  LHIPSC---AKKNPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQG 120
           LH        KKNPWLDPFDDG+DP+MEYGSLF DGKQ+EDPRPPDNP+NPYGFLKFP G
Sbjct: 61  LHTQQAINNKKKNPWLDPFDDGEDPEMEYGSLFTDGKQDEDPRPPDNPDNPYGFLKFPAG 120

Query: 121 YMVEVASLGLKLRGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQT 180
           + VEVASLGLK+RGDVRRCCCV+SGGVYENLLFFPAIQL+KDRYPGVQ+D++ASARGKQT
Sbjct: 121 FSVEVASLGLKIRGDVRRCCCVVSGGVYENLLFFPAIQLIKDRYPGVQVDIIASARGKQT 180

Query: 181 YELNKNVRWSNVYDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTAR 240
           YELNKNVRW+NVYDPDD FPEPA+YTDMVGLLK RYYDMVLSTKLAG+GHAAFLFMTTAR
Sbjct: 181 YELNKNVRWANVYDPDDDFPEPAEYTDMVGLLKNRYYDMVLSTKLAGLGHAAFLFMTTAR 240

Query: 241 DRVSYIYPDVNAAGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPL 300
           DRVSY+YP+VNAAGAGL LS+TF PDS NLS+GG+NMYHQM+DWLGRPFRSVPR  VPPL
Sbjct: 241 DRVSYVYPNVNAAGAGLLLSETFTPDSLNLSDGGYNMYHQMLDWLGRPFRSVPRQVVPPL 300

Query: 301 KVSISRKLKEIVKEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN 360
           +VSISRKLKE+V+ KY  AG EKG+YIVIHGIESDSKASMQS+GDTDSLLPI+ W EIA 
Sbjct: 301 RVSISRKLKEVVEAKYKNAGAEKGRYIVIHGIESDSKASMQSRGDTDSLLPIEVWDEIAE 360

Query: 361 AIRGFKPVFVIPHEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLA 420
           A+RGF+PVFVIPH+K RE+VEE VG++ASIVF+TTPGQLAALINDSAGVIATNTAAIQLA
Sbjct: 361 AVRGFRPVFVIPHDKVREDVEEVVGNDASIVFVTTPGQLAALINDSAGVIATNTAAIQLA 420

Query: 421 IAREKPSIALFCSEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLAL 470
            AREKPSIALFCSEEK KLFVP+AE K+C+ VSS TG+LIDID+  VKRAIQ F+V LAL
Sbjct: 421 NAREKPSIALFCSEEKGKLFVPNAEEKKCVIVSSKTGKLIDIDIEAVKRAIQIFDVSLAL 467

[Close]

BLAST of Carg18735 vs. TrEMBL
Match: tr|A0A2N9IQE5|A0A2N9IQE5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55618 PE=4 SV=1)

HSP 1 Score: 719.2 bits (1855), Expect = 6.2e-204
Identity = 362/472 (76.69%), Postives = 403/472 (85.38%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIP---SC 60
           MAT+SL  KSL  F                K  FL P      +++  P+ LH     + 
Sbjct: 1   MATTSLHPKSLSTF--LTNPALFPSPHHFPKLSFLHP-----HSTTKRPNLLHTQAKNNN 60

Query: 61  AKKNPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLG 120
            KKNPWLD F+DG+DPDMEYGSLFADGKQEEDPRPPDNP+NPYGFLKFP GY VE+ASL 
Sbjct: 61  KKKNPWLDFFNDGEDPDMEYGSLFADGKQEEDPRPPDNPDNPYGFLKFPAGYSVEIASLA 120

Query: 121 LKLRGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRW 180
           LK+RGDVRRCCCV+SGGVYENLLFFP IQL+KDRYPGVQ+DVV SARGKQTYELNKNVRW
Sbjct: 121 LKIRGDVRRCCCVVSGGVYENLLFFPTIQLIKDRYPGVQVDVVTSARGKQTYELNKNVRW 180

Query: 181 SNVYDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPD 240
           +NVYDPDD+FPEPA YTDMVGLLK RYYDMVLSTKLAG+GHAAFLFMTTARDRVSY+YP+
Sbjct: 181 ANVYDPDDHFPEPAVYTDMVGLLKSRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYVYPN 240

Query: 241 VNAAGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLK 300
           VNAAGAGL LS+TF PDS NLSEGG+NMYHQM+DWLGRPFRSVPR  VPPL+VSISRKLK
Sbjct: 241 VNAAGAGLLLSETFTPDSLNLSEGGYNMYHQMLDWLGRPFRSVPRQSVPPLRVSISRKLK 300

Query: 301 EIVKEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVF 360
           E+V+ KY  A VEKG+Y+VIHGIESDSKASMQS+GDTDSLLPIQ WAEIA AIRGF+P+F
Sbjct: 301 EVVEAKYKNASVEKGRYVVIHGIESDSKASMQSRGDTDSLLPIQVWAEIAEAIRGFRPLF 360

Query: 361 VIPHEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIA 420
           VIPHEK RE+VEE VG++ASIVFITTPGQLAALINDSAGVIATNTAAIQLA AREKPSIA
Sbjct: 361 VIPHEKVREDVEEIVGNDASIVFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSIA 420

Query: 421 LFCSEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALA 470
           LFCSEEK KLFVP+AE K C+ VSS+TG+L+DID+  VKR+IQ F+V LALA
Sbjct: 421 LFCSEEKGKLFVPNAEKKSCVIVSSSTGKLLDIDIEAVKRSIQIFDVSLALA 465

[Close]

BLAST of Carg18735 vs. TrEMBL
Match: tr|W9QQ77|W9QQ77_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013517 PE=4 SV=1)

HSP 1 Score: 717.2 bits (1850), Expect = 2.4e-203
Identity = 351/470 (74.68%), Postives = 400/470 (85.11%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFXXXXXXXXXXXXXXXTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60
           MAT+SL  KSL PF               TK  FL   D     S + P+ LH  +  KK
Sbjct: 1   MATTSLLPKSLSPF--LKNPHSPFPPTHLTKLAFLNSQD-HPHNSKTRPNNLHTANAKKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120
           NPWLDPFDDG+DPDMEYGSLFADGKQEEDPRP DNP+NPYGFLKFP+G+ VE+  L LK+
Sbjct: 61  NPWLDPFDDGEDPDMEYGSLFADGKQEEDPRPADNPDNPYGFLKFPKGFNVEIVPLALKV 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180
           RGDVRRCCC+ISGGVYENLLFFP IQL+KDRYPGVQIDV+A+ RGKQTYELNKNVRW+NV
Sbjct: 121 RGDVRRCCCIISGGVYENLLFFPVIQLIKDRYPGVQIDVIAADRGKQTYELNKNVRWANV 180

Query: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240
           YDPDDYFPEPA+YTDM+G+LK RYYDMVLSTKLAG+GHAAF+FMT+ARDRVSYIYP+ NA
Sbjct: 181 YDPDDYFPEPAEYTDMLGVLKNRYYDMVLSTKLAGLGHAAFIFMTSARDRVSYIYPNANA 240

Query: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300
           AGAGL LS+TF P+SSNLS+GG++MYHQM DWLGRPFRSVPRHPVPPLKVSISRKLKE+V
Sbjct: 241 AGAGLLLSETFTPESSNLSDGGYSMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEVV 300

Query: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360
           +EKY +AG EKGKY+VIHGI+SDSKA+MQSKGDTDSLLPIQ W EI + +R   PVFVIP
Sbjct: 301 EEKYKKAGAEKGKYVVIHGIKSDSKATMQSKGDTDSLLPIQVWDEITSGLREIWPVFVIP 360

Query: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420
           HE+ERE+VEE  GD+ASIVFITTPGQLAALINDSAGVI+TNTAA+QLA AREKPSIALFC
Sbjct: 361 HEREREDVEEVAGDDASIVFITTPGQLAALINDSAGVISTNTAAVQLANAREKPSIALFC 420

Query: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAF 471
           SEEKA LFVP+AE K C+ +SS TG+LIDID+  VK+A+  F++ LAL F
Sbjct: 421 SEEKANLFVPNAEDKNCVLISSKTGKLIDIDVEAVKKALPVFDLSLALVF 467

The following BLAST results are available for this feature:

BLAST of Carg18735 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953552.1	4.9e-261	99.58	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata]	[more]
XP_022992479.1	7.1e-260	98.94	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima]	[more]
XP_023548446.1	2.7e-259	99.15	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita pepo subs...	[more]
XP_022145001.1	1.1e-241	89.36	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Momordica charantia...	[more]
XP_008461180.1	3.3e-241	92.36	PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis ...	[more]

BLAST of Carg18735 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G15980.1	5.2e-188	72.83	NDH-dependent cyclic electron flow 1	[more]

BLAST of Carg18735 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S9N6\|PNSB1_ARATH	9.3e-187	72.83	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Carg18735 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CEK1\|A0A1S3CEK1_CUCME	2.2e-241	92.36	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3...	[more]
tr\|A0A0A0K6S9\|A0A0A0K6S9_CUCSA	1.7e-238	90.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431990 PE=4 SV=1	[more]
tr\|A0A2P4N2X5\|A0A2P4N2X5_QUESU	1.7e-206	75.47	Photosynthetic ndh subunit of subcomplex b 1, chloroplastic OS=Quercus suber OX=...	[more]
tr\|A0A2N9IQE5\|A0A2N9IQE5_FAGSY	6.2e-204	76.69	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55618 PE=4 SV=1	[more]
tr\|W9QQ77\|W9QQ77_9ROSA	2.4e-203	74.68	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_013517 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18735-RA	Carg18735-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.2000		coord: 138..274 e-value: 5.8E-5 score: 25.2
None	No IPR available	GENE3D	G3DSA:3.40.50.2000		coord: 301..464 e-value: 3.5E-8 score: 34.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99
None	No IPR available	PANTHER	PTHR37698	FAMILY NOT NAMED	coord: 16..469
None	No IPR available	SUPERFAMILY	SSF53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 138..461

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18735	Cla015322	Watermelon (97103) v1	carwmB0345
Carg18735	Csa7G431990	Cucumber (Chinese Long) v2	carcuB0387
Carg18735	MELO3C023468	Melon (DHL92) v3.5.1	carmeB0359
Carg18735	ClCG09G003340	Watermelon (Charleston Gray)	carwcgB0346
Carg18735	CSPI07G20110	Wild cucumber (PI 183967)	carcpiB0391
Carg18735	Cucsa.105910	Cucumber (Gy14) v1	carcgyB0414
Carg18735	CmaCh17G008970	Cucurbita maxima (Rimu)	carcmaB0497
Carg18735	CmoCh08G005800	Cucurbita moschata (Rifu)	carcmoB0482
Carg18735	CmoCh17G008660	Cucurbita moschata (Rifu)	carcmoB0480
Carg18735	Cp4.1LG12g07280	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18735	CsGy7G018390	Cucumber (Gy14) v2	carcgybB0366
Carg18735	MELO3C023468.2	Melon (DHL92) v3.6.1	carmedB0364
Carg18735	CsaV3_7G031890	Cucumber (Chinese Long) v3	carcucB0390
Carg18735	Cla97C09G165570	Watermelon (97103) v2	carwmbB0371
Carg18735	Bhi09G000434	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18735	Carg13502	Silver-seed gourd	carcarB379

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18735	Wax gourd	carwgoB0437
Carg18735	Silver-seed gourd	carcarB383
Carg18735	Cucumber (Gy14) v2	carcgybB0365
Carg18735	Cucurbita maxima (Rimu)	carcmaB0496
Carg18735	Cucurbita maxima (Rimu)	carcmaB0498
Carg18735	Cucurbita maxima (Rimu)	carcmaB0499
Carg18735	Cucurbita moschata (Rifu)	carcmoB0479
Carg18735	Cucurbita moschata (Rifu)	carcmoB0481
Carg18735	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18735	Cucurbita pepo (Zucchini)	carcpeB0495
Carg18735	Wild cucumber (PI 183967)	carcpiB0390
Carg18735	Cucumber (Chinese Long) v2	carcuB0386
Carg18735	Cucumber (Chinese Long) v3	carcucB0389
Carg18735	Bottle gourd (USVL1VR-Ls)	carlsiB322
Carg18735	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18735	Melon (DHL92) v3.5.1	carmeB0360
Carg18735	Watermelon (Charleston Gray)	carwcgB0347
Carg18735	Watermelon (97103) v1	carwmB0346
Carg18735	Watermelon (97103) v2	carwmbB0369