Carg18713 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18713
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Oxidoreductase/transition metal ion-binding protein
Location	Cucurbita_argyrosperma_scaffold_139 : 269925 .. 270491 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTCAATGGAGACTCCTCCACCTCAAATTCCGACTCTCAGCCCACTTTTCCTCTTCATCTCTGCTTCTTCTTTCTCATCCTCTTCATGTTCTTGGCCTTCTCTTGGCACTCGACTTACGAGTCGGCTGTTGAAGGCGTTTTCGATCAGCTCAAGCTTCTTCTCATCGTCTCGCCACTCCTCCTCCTCCTCCTCCTTCACTGGCTCTCCAATGGTGAAAACGGCCGCCTACCGCCCCTCGTCTCCCTACCGGAAAAGGACTCGCTCCACCGCGCTGGAGGGACACCGTGGGGAGTTGGGTTTATGTTGGTTATTCTCCTTTTCATGATCTCTTACCAATCTTACTTCCAAGAACGGTGGTTTCCTCTGTTGAGCCGGTGATCGGATTGTATATCGGAAAGTCCAATCTCTTGTCTAGTTGTCGTTGAAGAATATTCTCTTGGGATTCTGTTTTTTTGAAGAACAAGAATTTAGGTAGAGATGTGTCGGATCTTGTCAGCATAATATTTGTTTATGTTGATCGTTAATGTAATTATTTTTTTTTTCTTTCTGATTTAGATATAA

mRNA sequence

ATGGCTGTCAATGGAGACTCCTCCACCTCAAATTCCGACTCTCAGCCCACTTTTCCTCTTCATCTCTGCTTCTTCTTTCTCATCCTCTTCATGTTCTTGGCCTTCTCTTGGCACTCGACTTACGAGTCGGCTGTTGAAGGCGTTTTCGATCAGCTCAAGCTTCTTCTCATCGTCTCGCCACTCCTCCTCCTCCTCCTCCTTCACTGGCTCTCCAATGGTGAAAACGGCCGCCTACCGCCCCTCGTCTCCCTACCGGAAAAGGACTCGCTCCACCGCGCTGGAGGGACACCGTGGGGAGTTGGGTTTATGTTGATATAA

Coding sequence (CDS)

ATGGCTGTCAATGGAGACTCCTCCACCTCAAATTCCGACTCTCAGCCCACTTTTCCTCTTCATCTCTGCTTCTTCTTTCTCATCCTCTTCATGTTCTTGGCCTTCTCTTGGCACTCGACTTACGAGTCGGCTGTTGAAGGCGTTTTCGATCAGCTCAAGCTTCTTCTCATCGTCTCGCCACTCCTCCTCCTCCTCCTCCTTCACTGGCTCTCCAATGGTGAAAACGGCCGCCTACCGCCCCTCGTCTCCCTACCGGAAAAGGACTCGCTCCACCGCGCTGGAGGGACACCGTGGGGAGTTGGGTTTATGTTGATATAA

Protein sequence

MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI

Homology

[Close]

BLAST of Carg18713 vs. NCBI nr
Match: XP_022953918.1 (uncharacterized protein LOC111456323 [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 2.9e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSP 60
           MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSP
Sbjct: 1   MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSP 60

Query: 61  LLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           LLLLLLLHWLSNGENGRLPPLV LPEKDSLHRAGGTPWGVGFML+
Sbjct: 61  LLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLV 105

[Close]

BLAST of Carg18713 vs. NCBI nr
Match: XP_023548678.1 (uncharacterized protein LOC111807266 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.7 bits (535), Expect = 2.4e-51
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSP 60
           MAVNGDSS SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSP
Sbjct: 1   MAVNGDSSASNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSP 60

Query: 61  LLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           LLLLLL+HWLSNGENGRLPPLV LPEKDSLHRAGGTPWGVGFML+
Sbjct: 61  LLLLLLVHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLV 105

[Close]

BLAST of Carg18713 vs. NCBI nr
Match: XP_022991944.1 (uncharacterized protein LOC111488435 [Cucurbita maxima])

HSP 1 Score: 208.8 bits (530), Expect = 9.2e-51
Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSP 60
           MAVNGDSST+NSDSQPTFPLHLCFFFLILFMFLAFSW+STYESAVEGVFDQLKLLLI+SP
Sbjct: 1   MAVNGDSSTTNSDSQPTFPLHLCFFFLILFMFLAFSWYSTYESAVEGVFDQLKLLLIISP 60

Query: 61  LLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           LLLLLL+HWLSNGENGRLPPLV LPEKDSLHRAGGTPWGVGFML+
Sbjct: 61  LLLLLLVHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLV 105

[Close]

BLAST of Carg18713 vs. NCBI nr
Match: XP_022151890.1 (uncharacterized protein LOC111019747 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSP 60
           MAV  +S     +SQP+FPLHLCFFFLIL MFL FSW+S YESAV+GVFDQLKLLLI SP
Sbjct: 1   MAVQNNS----DESQPSFPLHLCFFFLILLMFLTFSWYSNYESAVDGVFDQLKLLLIASP 60

Query: 61  LLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           LLLLL +HWLSN +NGRLPPL+ LPEKDSLHRAG TPWGVGF+L+
Sbjct: 61  LLLLLAVHWLSNADNGRLPPLLPLPEKDSLHRAGATPWGVGFLLV 101

[Close]

BLAST of Carg18713 vs. NCBI nr
Match: XP_011659474.1 (PREDICTED: uncharacterized protein LOC101219783 [Cucumis sativus] >KGN45177.1 hypothetical protein Csa_7G429630 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 4.0e-38
Identity = 78/96 (81.25%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 10  SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHW 69
           +N+ SQPTFPLHLCFFFLIL MFL+FSW+S YESAVE VFDQLKLLLIVSPLLLLLL+HW
Sbjct: 2   ANTHSQPTFPLHLCFFFLILLMFLSFSWYSNYESAVEDVFDQLKLLLIVSPLLLLLLVHW 61

Query: 70  LSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           LSN ++G LP L+ LPEKDSLHRAGGTPWGVGF+L+
Sbjct: 62  LSNTKSGHLPSLIPLPEKDSLHRAGGTPWGVGFLLV 97

[Close]

BLAST of Carg18713 vs. TAIR10
Match: AT2G31940.1 (unknown protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-23
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 11  NSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWL 70
           + +  P  PLHLC F LIL MF+  SW+++YE  +EG   Q KL L+ SPLLLLL +H+L
Sbjct: 4   DQEGSPPVPLHLCVFVLILLMFVTISWYASYEPVIEGFTYQFKLALMASPLLLLLAVHFL 63

Query: 71  SN--GENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           S+  G  G +  L+ L E++SL+RAGGTPWGV FML+
Sbjct: 64  SDDQGVGGMMTSLIHLNERESLYRAGGTPWGVAFMLV 100

[Close]

BLAST of Carg18713 vs. TAIR10
Match: AT5G19875.1 (unknown protein)

HSP 1 Score: 87.4 bits (215), Expect = 5.6e-18
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 21  HLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPP 80
           HLCF F+++F  L+F+W+  +ES +E   D LKL+ I +PL LLLL+H+ S G    L  
Sbjct: 21  HLCFLFIVVFFVLSFTWYLNFESIIEDTLDHLKLVFIFTPLFLLLLVHFFSGG----LSF 80

Query: 81  LVSLPEKDSLHRAGGTPWGVGFMLI 106
            V  PE+DS+HRAG +PWGV  +L+
Sbjct: 81  YVPWPEQDSIHRAGSSPWGVAAVLV 101

[Close]

BLAST of Carg18713 vs. TAIR10
Match: AT2G21180.1 (unknown protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 23/69 (33.33%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 7  SSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLL 66
          SS  +S S    P  +     +  +FL  SW+ + E A E   +Q+   L++ PL L++L
Sbjct: 8  SSILDSFSLSPLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVL 67

Query: 67 LHWLSNGEN 76
          + WLS+ EN
Sbjct: 68 VRWLSSMEN 76

[Close]

BLAST of Carg18713 vs. TrEMBL
Match: tr|A0A0A0K9W6|A0A0A0K9W6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429630 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.7e-38
Identity = 78/96 (81.25%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 10  SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHW 69
           +N+ SQPTFPLHLCFFFLIL MFL+FSW+S YESAVE VFDQLKLLLIVSPLLLLLL+HW
Sbjct: 2   ANTHSQPTFPLHLCFFFLILLMFLSFSWYSNYESAVEDVFDQLKLLLIVSPLLLLLLVHW 61

Query: 70  LSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           LSN ++G LP L+ LPEKDSLHRAGGTPWGVGF+L+
Sbjct: 62  LSNTKSGHLPSLIPLPEKDSLHRAGGTPWGVGFLLV 97

[Close]

BLAST of Carg18713 vs. TrEMBL
Match: tr|A0A1S3CE82|A0A1S3CE82_CUCME (uncharacterized protein LOC103499879 OS=Cucumis melo OX=3656 GN=LOC103499879 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-37
Identity = 77/92 (83.70%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 14  SQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNG 73
           SQPTFPLHLCFFFLIL MFL+FSW+S YESAVE VFDQLKLLLIVSPLLLLLL+HWLSN 
Sbjct: 7   SQPTFPLHLCFFFLILLMFLSFSWYSNYESAVEDVFDQLKLLLIVSPLLLLLLVHWLSNT 66

Query: 74  ENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           +NG LP L+ LPEK+SLHRAGGTPWGVGF+L+
Sbjct: 67  KNGHLPSLIPLPEKNSLHRAGGTPWGVGFLLV 98

[Close]

BLAST of Carg18713 vs. TrEMBL
Match: tr|A0A2N9FP19|A0A2N9FP19_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20349 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-29
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = 0


Query: 9   TSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLH 68
           +S+S SQP  PLHLCFFFLIL MFL FSW+  YE  +E +FDQ+K++LIVSPLLLLL++H
Sbjct: 7   SSSSHSQPPMPLHLCFFFLILLMFLGFSWYINYEPVLESMFDQVKMVLIVSPLLLLLVVH 66

Query: 69  WLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           +LSN E  R    + LPE+DS+HRAGGTPWG+GF+L+
Sbjct: 67  FLSNDERRRFSDFIPLPERDSVHRAGGTPWGLGFVLV 103

[Close]

BLAST of Carg18713 vs. TrEMBL
Match: tr|A0A2C9V7P9|A0A2C9V7P9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G152800 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-29
Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 4   NGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLL 63
           NG+ S+  S  QP  P+HLCFF LIL + ++FSW+  YE  +E +FDQ+KL+L+VSPLLL
Sbjct: 3   NGNYSSPYS-QQPPLPIHLCFFLLILLLLISFSWYMNYEPVLESMFDQVKLVLMVSPLLL 62

Query: 64  LLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           LL++HWLSN E+ RL   + LPEKDSLHRAGGTPWGVGF+L+
Sbjct: 63  LLVVHWLSNNESRRLSYFIPLPEKDSLHRAGGTPWGVGFLLV 103

[Close]

BLAST of Carg18713 vs. TrEMBL
Match: tr|M5X5I1|M5X5I1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G001900 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 60/89 (67.42%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 17  TFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENG 76
           TFPLHLCFF L+L  F+ FSW+  YES +E +FDQ+KL+L+VSPLLLLL++HWLSN +  
Sbjct: 20  TFPLHLCFFLLVLLTFVGFSWYINYESVLESMFDQVKLVLMVSPLLLLLVVHWLSNDDRR 79

Query: 77  RLPPLVSLPEKDSLHRAGGTPWGVGFMLI 106
           R+  L+ LPEKDSLHRAGGTPWGVGF+L+
Sbjct: 80  RVHSLIPLPEKDSLHRAGGTPWGVGFLLV 108

The following BLAST results are available for this feature:

BLAST of Carg18713 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953918.1	2.9e-52	98.10	uncharacterized protein LOC111456323 [Cucurbita moschata]	[more]
XP_023548678.1	2.4e-51	96.19	uncharacterized protein LOC111807266 [Cucurbita pepo subsp. pepo]	[more]
XP_022991944.1	9.2e-51	94.29	uncharacterized protein LOC111488435 [Cucurbita maxima]	[more]
XP_022151890.1	2.4e-38	76.19	uncharacterized protein LOC111019747 [Momordica charantia]	[more]
XP_011659474.1	4.0e-38	81.25	PREDICTED: uncharacterized protein LOC101219783 [Cucumis sativus] >KGN45177.1 hy...	[more]

BLAST of Carg18713 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31940.1	1.2e-23	52.58	unknown protein	[more]
AT5G19875.1	5.6e-18	48.24	unknown protein	[more]
AT2G21180.1	2.1e-04	33.33	unknown protein	[more]

BLAST of Carg18713 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18713 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9W6\|A0A0A0K9W6_CUCSA	2.7e-38	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429630 PE=4 SV=1	[more]
tr\|A0A1S3CE82\|A0A1S3CE82_CUCME	1.7e-37	83.70	uncharacterized protein LOC103499879 OS=Cucumis melo OX=3656 GN=LOC103499879 PE=...	[more]
tr\|A0A2N9FP19\|A0A2N9FP19_FAGSY	2.3e-29	63.92	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20349 PE=4 SV=1	[more]
tr\|A0A2C9V7P9\|A0A2C9V7P9_MANES	5.0e-29	61.76	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G152800 PE=4 SV=...	[more]
tr\|M5X5I1\|M5X5I1_PRUPE	1.1e-28	67.42	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G001900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18713-RA	Carg18713-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 12..105
None	No IPR available	PANTHER	PTHR33306:SF10	SUBFAMILY NOT NAMED	coord: 12..105

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18713	Cla015286	Watermelon (97103) v1	carwmB0345
Carg18713	Csa7G429630	Cucumber (Chinese Long) v2	carcuB0387
Carg18713	MELO3C023503	Melon (DHL92) v3.5.1	carmeB0359
Carg18713	ClCG09G003670	Watermelon (Charleston Gray)	carwcgB0346
Carg18713	CSPI07G19700	Wild cucumber (PI 183967)	carcpiB0391
Carg18713	Cucsa.049920	Cucumber (Gy14) v1	carcgyB0413
Carg18713	CmaCh08G005620	Cucurbita maxima (Rimu)	carcmaB0499
Carg18713	CmaCh17G009220	Cucurbita maxima (Rimu)	carcmaB0497
Carg18713	CmoCh17G008930	Cucurbita moschata (Rifu)	carcmoB0480
Carg18713	CmoCh08G005540	Cucurbita moschata (Rifu)	carcmoB0482
Carg18713	Cp4.1LG17g08410	Cucurbita pepo (Zucchini)	carcpeB0494
Carg18713	Cp4.1LG12g07090	Cucurbita pepo (Zucchini)	carcpeB0493
Carg18713	CsaV3_7G031520	Cucumber (Chinese Long) v3	carcucB0390
Carg18713	Cla97C09G165930	Watermelon (97103) v2	carwmbB0371
Carg18713	Bhi09G000476	Wax gourd	carwgoB0439

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18713	Carg13477	Silver-seed gourd	carcarB379
Carg18713	Carg06937	Silver-seed gourd	carcarB381

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18713	Silver-seed gourd	carcarB383
Carg18713	Cucumber (Gy14) v2	carcgybB0365
Carg18713	Cucumber (Gy14) v2	carcgybB0366
Carg18713	Cucurbita maxima (Rimu)	carcmaB0496
Carg18713	Cucurbita maxima (Rimu)	carcmaB0498
Carg18713	Cucurbita moschata (Rifu)	carcmoB0479
Carg18713	Cucurbita moschata (Rifu)	carcmoB0481
Carg18713	Cucurbita pepo (Zucchini)	carcpeB0495
Carg18713	Wild cucumber (PI 183967)	carcpiB0390
Carg18713	Cucumber (Chinese Long) v2	carcuB0386
Carg18713	Cucumber (Chinese Long) v3	carcucB0389
Carg18713	Bottle gourd (USVL1VR-Ls)	carlsiB322
Carg18713	Bottle gourd (USVL1VR-Ls)	carlsiB321
Carg18713	Melon (DHL92) v3.5.1	carmeB0360
Carg18713	Melon (DHL92) v3.6.1	carmedB0364
Carg18713	Watermelon (Charleston Gray)	carwcgB0347
Carg18713	Watermelon (97103) v1	carwmB0346
Carg18713	Watermelon (97103) v2	carwmbB0369
Carg18713	Wax gourd	carwgoB0437