Carg18611 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18611
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Zinc finger CCCH domain protein
Location	Cucurbita_argyrosperma_scaffold_147 : 207547 .. 208746 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATCGATGAGCAACCTAACCGCCCTAACCAGAAGCTTCATGTTCCGCCATGGACGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGCGGAAGCGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCACTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTGCCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGCTTCAGGTCGGGAGGCGGATTCTCCGGTGGATACGTATTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTCTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACGGCGTGTGCGGATTTTAGGAAGGGGAACTGTAATAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCAGAGCAACTTAGGATTTTGCCTCAACAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCTATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCAATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCAGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTAGCGGCGAGGAACAGGCGATGGCGCGAGTGGAGTCCGGGAGAGATTTACGAGCAAAAATGCTGGAGAAACTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAACCCGGCGGCGGAAGTGTGGACGTTGGTTGGATCTCGGAGCTTCTCAAGTAA

mRNA sequence

ATGATGATCGATGAGCAACCTAACCGCCCTAACCAGAAGCTTCATGTTCCGCCATGGACGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGCGGAAGCGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCACTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTGCCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGCTTCAGGTCGGGAGGCGGATTCTCCGGTGGATACGTATTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTCTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACGGCGTGTGCGGATTTTAGGAAGGGGAACTGTAATAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCAGAGCAACTTAGGATTTTGCCTCAACAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCTATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCAATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCAGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTAGCGGCGAGGAACAGGCGATGGCGCGAGTGGAGTCCGGGAGAGATTTACGAGCAAAAATGCTGGAGAAACTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAACCCGGCGGCGGAAGTGTGGACGTTGGTTGGATCTCGGAGCTTCTCAAGTAA

Coding sequence (CDS)

ATGATGATCGATGAGCAACCTAACCGCCCTAACCAGAAGCTTCATGTTCCGCCATGGACGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGCGGAAGCGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCACTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTGCCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGCTTCAGGTCGGGAGGCGGATTCTCCGGTGGATACGTATTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTCTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACGGCGTGTGCGGATTTTAGGAAGGGGAACTGTAATAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCAGAGCAACTTAGGATTTTGCCTCAACAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCTATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCAATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCAGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTAGCGGCGAGGAACAGGCGATGGCGCGAGTGGAGTCCGGGAGAGATTTACGAGCAAAAATGCTGGAGAAACTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAACCCGGCGGCGGAAGTGTGGACGTTGGTTGGATCTCGGAGCTTCTCAAGTAA

Protein sequence

MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGSGSGVKCDGCSTGDGYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK

Homology

[Close]

BLAST of Carg18611 vs. NCBI nr
Match: XP_023536933.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 778.1 bits (2008), Expect = 1.4e-221
Identity = 395/399 (99.00%), Postives = 395/399 (99.00%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MMIDEQPNRPNQKLHVPPWTFMEDPASDGYS    XXXXXXXXXXXXXXXXKCDGCSTGD
Sbjct: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYS----XXXXXXXXXXXXXXXXKCDGCSTGD 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
           GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR
Sbjct: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240
           ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ
Sbjct: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240

Query: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300
           MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP
Sbjct: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300

Query: 301 SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVESGR 360
           SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVESGR
Sbjct: 301 SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVESGR 360

Query: 361 DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 400
           DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK
Sbjct: 361 DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 395

[Close]

BLAST of Carg18611 vs. NCBI nr
Match: XP_022937473.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 773.9 bits (1997), Expect = 2.7e-220
Identity = 393/399 (98.50%), Postives = 393/399 (98.50%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MMIDEQPNRPNQKLHVPPWTFMEDPASDGYS    XXXXXXXXXXXXXXXXKCDGCSTGD
Sbjct: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYS----XXXXXXXXXXXXXXXXKCDGCSTGD 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
           GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR
Sbjct: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNC KGDACEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240
           ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ
Sbjct: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240

Query: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300
           MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP
Sbjct: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300

Query: 301 SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVESGR 360
           SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLG GEEQAMARVESGR
Sbjct: 301 SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGR 360

Query: 361 DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 400
           DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK
Sbjct: 361 DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 395

[Close]

BLAST of Carg18611 vs. NCBI nr
Match: XP_022965788.1 (zinc finger CCCH domain-containing protein 20-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 767.7 bits (1981), Expect = 2.0e-218
Identity = 373/399 (93.48%), Postives = 374/399 (93.73%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MMIDEQPNRPNQKLHVPPW FMEDPASDGYS                    KCDGCS+GD
Sbjct: 1   MMIDEQPNRPNQKLHVPPWAFMEDPASDGYS-------------HSPGSGVKCDGCSSGD 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
           GYSPFYLQEALAMLQQYLPSKEAEVESDLD SGRE DSPVDTYSSDQFRMYEFKIKKCLR
Sbjct: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240
           ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ
Sbjct: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240

Query: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300
           MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP
Sbjct: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300

Query: 301 SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVESGR 360
           SSLWNVQVGSPVFGSPGESSARSGF SLPDTPTPPAVRYLDFWDLG GEEQAMARVESGR
Sbjct: 301 SSLWNVQVGSPVFGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGR 360

Query: 361 DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 400
           DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK
Sbjct: 361 DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 386

[Close]

BLAST of Carg18611 vs. NCBI nr
Match: XP_022965787.1 (zinc finger CCCH domain-containing protein 20-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 767.7 bits (1981), Expect = 2.0e-218
Identity = 391/399 (97.99%), Postives = 392/399 (98.25%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MMIDEQPNRPNQKLHVPPW FMEDPASDGYS  XXXXXXXXXXXXXXXXXXKCDGCS+GD
Sbjct: 1   MMIDEQPNRPNQKLHVPPWAFMEDPASDGYS--XXXXXXXXXXXXXXXXXXKCDGCSSGD 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
           GYSPFYLQEALAMLQQYLPSKEAEVESDLD SGRE DSPVDTYSSDQFRMYEFKIKKCLR
Sbjct: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240
           ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ
Sbjct: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240

Query: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300
           MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP
Sbjct: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300

Query: 301 SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVESGR 360
           SSLWNVQVGSPVFGSPGESSARSGF SLPDTPTPPAVRYLDFWDLG GEEQAMARVESGR
Sbjct: 301 SSLWNVQVGSPVFGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGR 360

Query: 361 DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 400
           DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK
Sbjct: 361 DLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 397

[Close]

BLAST of Carg18611 vs. NCBI nr
Match: XP_008459142.1 (PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis melo])

HSP 1 Score: 624.0 bits (1608), Expect = 3.5e-175
Identity = 304/403 (75.43%), Postives = 332/403 (82.38%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           M++ EQP R N  + +PPWTF+ED   D YS                    KCDGCS+G 
Sbjct: 1   MIVGEQPKRTNPTVQIPPWTFLEDTGMDVYS-------HSSPGSGGSSGSVKCDGCSSGG 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
           GYSP+YLQEALAML++YLPS EAE++SD+D SG+E DSPVD YSSDQFRMYEFKIKKC R
Sbjct: 61  GYSPYYLQEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECPFAHPGEKARRRDPR+YYYSGTACADFRKG+C KGDACEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240
           ARYRTQPCKDGTSCRRRVCFFAHTPEQLR+LPQQSPRST+SIPSYDGSPLRQAIEACAKQ
Sbjct: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQ 240

Query: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300
           MPYLSS GTS PVSPR            LNRPHA SSINEM+ASLR+LQL+KEL KVQSP
Sbjct: 241 MPYLSSPGTSPPVSPRXXXXXXXXXXXXLNRPHAPSSINEMIASLRNLQLNKELCKVQSP 300

Query: 301 --SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVES 360
             SS WNVQVGSPVFGSP +S+ RSG  SLP+T TPP +RYLDFW+LG GEE AM RVES
Sbjct: 301 SSSSSWNVQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVES 360

Query: 361 GRDLRAKMLEKLRKENSVACGDQEKPGGGS--VDVGWISELLK 400
           GRDLRAKM EKLRKENSV CGDQ+K  GG+  +DVGWISELLK
Sbjct: 361 GRDLRAKMFEKLRKENSVGCGDQDKNSGGAGGLDVGWISELLK 396

[Close]

BLAST of Carg18611 vs. TAIR10
Match: AT2G19810.1 (CCCH-type zinc finger family protein)

HSP 1 Score: 347.1 bits (889), Expect = 1.5e-95
Identity = 199/407 (48.89%), Postives = 254/407 (62.41%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMED-PASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTG 60
           MMI E     N  +H+PPW   ED   SD Y                       DG S+ 
Sbjct: 1   MMIGESHRGFNPTVHIPPWPLSEDLTVSDIYGSP--------------------DGGSS- 60

Query: 61  DGYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCL 120
                  + EALA LQ+YLPS E + +SD D SG   DSP+D Y+ D FRMYEFK+++C 
Sbjct: 61  -------MMEALAELQRYLPSNEPDPDSDPDLSG--PDSPIDAYTCDHFRMYEFKVRRCA 120

Query: 121 RGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLH 180
           RGRSHDWTECP+AHPGEKARRRDPRK++YSGTAC +FRKG C +GDACEF+HGVFECWLH
Sbjct: 121 RGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLH 180

Query: 181 PARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYD--GSPLRQAIEAC 240
           PARYRTQPCKDG +CRRRVCFFAH+P+Q+R+LP QSP     + S+D     +R+A +  
Sbjct: 181 PARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSP---DRVDSFDVLSPTIRRAFQFS 240

Query: 241 AKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKV 300
                 +S S  S PVSPR +S     +   L+R   ++  N++VASLR+LQL+K     
Sbjct: 241 ------ISPSSNSPPVSPRGDSDSSCSL---LSRSLGSNLGNDVVASLRNLQLNK---VK 300

Query: 301 QSPSSLWNVQVGSPVFGSPGESSARS----GFSSLPDTPTPPAVRYLDFWDLGSGEEQAM 360
            S SS +N Q+G   +G        S    GF SLP TPT P   +++ W+ G  EE AM
Sbjct: 301 SSLSSSYNNQIGG--YGXXXXXXRGSVLGPGFRSLPTTPTRPG--FMNIWENGLEEEPAM 358

Query: 361 ARVESGRDLRAKMLEKLRKENSVAC--GDQEKPGGGSVDVGWISELL 399
            RVESGR+LRA++ EKL KEN +     D ++  G + DVGW+S+L+
Sbjct: 361 ERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVGWVSDLV 358

[Close]

BLAST of Carg18611 vs. TAIR10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 319.7 bits (818), Expect = 2.6e-87
Identity = 176/335 (52.54%), Postives = 214/335 (63.88%), Query Frame = 0


Query: 69  EALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTE 128
           EALA LQ+YLPS E + ES  D  G   DSP+D YS D FRMY+FK+++C RGRSHDWTE
Sbjct: 43  EALAGLQRYLPSNEPDPESYPDLLG--PDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTE 102

Query: 129 CPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPC 188
           CP+AHPGEKARRRDPRKY+YSGTAC DFRKG C KGD+CEFAHGVFECWLHPARYRTQPC
Sbjct: 103 CPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPC 162

Query: 189 KDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSG 248
           KDG +C R++CFFAH+P+QLR L        +                       +S   
Sbjct: 163 KDGGNCLRKICFFAHSPDQLRFL-------HTRXXXXXXXXXXXXXXXXXXXXXXISPVS 222

Query: 249 TSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQV 308
            S P+SPR +S   SPM +SL+R   + SIN++V S R+LQ           +S+ +   
Sbjct: 223 GSPPMSPRADS-ESSPMTQSLSRSLGSCSINDVVPSFRNLQF----------NSVKSFPR 282

Query: 309 GSPV--FGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMAR-VESGRDLRAK 368
            +P+  FGSP  S    GF SLP TPT P    LD W+ G  EE  M R VESGR+LR K
Sbjct: 283 NNPLFGFGSPRGSILGPGFQSLPTTPTRPG--NLDIWEYGLEEEPVMERVVESGRELREK 342

Query: 369 MLEKLRKENSV--ACGDQEKPGGGSVDVGWISELL 399
           M EKL KEN +     D ++  G + DVGW+S+LL
Sbjct: 343 MREKLHKENCMDRVAQDPDQNLGEAPDVGWVSDLL 355

[Close]

BLAST of Carg18611 vs. TAIR10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 279.3 bits (713), Expect = 3.8e-75
Identity = 166/380 (43.68%), Postives = 210/380 (55.26%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MMI E  NRP+  +H+P W  + DP +   S                         S  D
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTATISSPFSSVNLN-----------------SVND 60

Query: 61  -GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCL 120
             +SP    ++ A L +YLPS E   +SD  +SG E+    D++SSD+FR+YEFKI++C 
Sbjct: 61  YPHSPSPYLDSFASLFRYLPSNELTNDSD-SSSGDESSPLTDSFSSDEFRIYEFKIRRCA 120

Query: 121 RGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLH 180
           RGRSHDWTECPFAHPGEKARRRDPRK++YSGTAC +FRKG+C +GD+CEF+HGVFECWLH
Sbjct: 121 RGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLH 180

Query: 181 PARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAK 240
           P+RYRTQPCKDGTSCRRR+CFFAHT EQLR+LP               SP          
Sbjct: 181 PSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSP---------- 240

Query: 241 QMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQS 300
                +S   S   SP  ESPP SP            S  E++AS+R +QL+        
Sbjct: 241 -----TSILVSPSFSPPSESPPLSP------------STGELIASMRKMQLNG------- 300

Query: 301 PSSLWNVQVGSPVFGSPGESSARSGFSSL---PDTPTPPAVRYLDFWDLGSGEEQAMARV 360
                    G   + SP  S+ R  FSS        T P +R  +       E  AM  V
Sbjct: 301 ---------GGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEI-----EEAPAMEFV 314

Query: 361 ESGRDLRAKMLEKLRKENSV 377
           ESG++LRA+M  +L +ENS+
Sbjct: 361 ESGKELRAEMYARLSRENSL 314

[Close]

BLAST of Carg18611 vs. TAIR10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 208.4 bits (529), Expect = 8.3e-54
Identity = 103/188 (54.79%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 101 DTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRK-G 160
           D Y+SD FRM+EFKI++C R RSHDWT+CPFAHPGEKARRRDPR++ YSG  C +FR+ G
Sbjct: 76  DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGG 135

Query: 161 NCNKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRST 220
           +C++GD CEFAHGVFECWLHP RYRT+ CKDG  C+R+VCFFAH+P QLR+LP   P + 
Sbjct: 136 DCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLP---PENV 195

Query: 221 SSIPSYDGSPLRQAIEACAKQMPYLSSSGTST---PVSPRIESPPQSPMFRSLNRPHATS 280
           S +     SP   A   C     + SSS TST    +S    SP  SP     N+  A S
Sbjct: 196 SGV---SASPSPAAKNPCCL---FCSSSPTSTLLGNLSHLSRSPSLSPPMSPANKAAAFS 254

Query: 281 SINEMVAS 285
            +    AS
Sbjct: 256 RLRNRAAS 254

[Close]

BLAST of Carg18611 vs. TAIR10
Match: AT5G44260.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 205.7 bits (522), Expect = 5.4e-53
Identity = 107/213 (50.23%), Postives = 137/213 (64.32%), Query Frame = 0


Query: 101 DTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADF-RKG 160
           D Y+ D FRMYEFKI++C R RSHDWT+CPF+HPGEKARRRDPR+++Y+G  C +F R G
Sbjct: 54  DPYAGDHFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFSRHG 113

Query: 161 NCNKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRST 220
           +C++GD C FAHGVFECWLHP+RYRT+ CKDG  C+R+VCFFAH+P QLR+LP       
Sbjct: 114 DCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPSPENHI 173

Query: 221 SSIPSYDGSPLRQAIEACAKQ----MPYLSSSGTSTPV----SPRIESPPQSP-----MF 280
           S      GSP        + +      + S S TST +    SP   SPP SP      F
Sbjct: 174 SG--GCGGSPSSSPASVLSNKNNRCCLFCSHSPTSTLLNLSRSPS-SSPPLSPADKADAF 233

Query: 281 RSLNRPHATSSINEMVASLRSLQLHKELGKVQS 300
             L+R   T+ +NE+++SL SL L + L    S
Sbjct: 234 SRLSR-RRTAVLNELISSLDSLSLTEALAASSS 262

[Close]

BLAST of Carg18611 vs. Swiss-Prot
Match: sp|O82199|C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 2.7e-94
Identity = 199/407 (48.89%), Postives = 254/407 (62.41%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMED-PASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTG 60
           MMI E     N  +H+PPW   ED   SD Y                       DG S+ 
Sbjct: 1   MMIGESHRGFNPTVHIPPWPLSEDLTVSDIYGSP--------------------DGGSS- 60

Query: 61  DGYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCL 120
                  + EALA LQ+YLPS E + +SD D SG   DSP+D Y+ D FRMYEFK+++C 
Sbjct: 61  -------MMEALAELQRYLPSNEPDPDSDPDLSG--PDSPIDAYTCDHFRMYEFKVRRCA 120

Query: 121 RGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLH 180
           RGRSHDWTECP+AHPGEKARRRDPRK++YSGTAC +FRKG C +GDACEF+HGVFECWLH
Sbjct: 121 RGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLH 180

Query: 181 PARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYD--GSPLRQAIEAC 240
           PARYRTQPCKDG +CRRRVCFFAH+P+Q+R+LP QSP     + S+D     +R+A +  
Sbjct: 181 PARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSP---DRVDSFDVLSPTIRRAFQFS 240

Query: 241 AKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKV 300
                 +S S  S PVSPR +S     +   L+R   ++  N++VASLR+LQL+K     
Sbjct: 241 ------ISPSSNSPPVSPRGDSDSSCSL---LSRSLGSNLGNDVVASLRNLQLNK---VK 300

Query: 301 QSPSSLWNVQVGSPVFGSPGESSARS----GFSSLPDTPTPPAVRYLDFWDLGSGEEQAM 360
            S SS +N Q+G   +G        S    GF SLP TPT P   +++ W+ G  EE AM
Sbjct: 301 SSLSSSYNNQIGG--YGXXXXXXRGSVLGPGFRSLPTTPTRPG--FMNIWENGLEEEPAM 358

Query: 361 ARVESGRDLRAKMLEKLRKENSVAC--GDQEKPGGGSVDVGWISELL 399
            RVESGR+LRA++ EKL KEN +     D ++  G + DVGW+S+L+
Sbjct: 361 ERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVGWVSDLV 358

[Close]

BLAST of Carg18611 vs. Swiss-Prot
Match: sp|Q9M0G2|C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 4.6e-86
Identity = 176/335 (52.54%), Postives = 214/335 (63.88%), Query Frame = 0


Query: 69  EALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTE 128
           EALA LQ+YLPS E + ES  D  G   DSP+D YS D FRMY+FK+++C RGRSHDWTE
Sbjct: 43  EALAGLQRYLPSNEPDPESYPDLLG--PDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTE 102

Query: 129 CPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPC 188
           CP+AHPGEKARRRDPRKY+YSGTAC DFRKG C KGD+CEFAHGVFECWLHPARYRTQPC
Sbjct: 103 CPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPC 162

Query: 189 KDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSG 248
           KDG +C R++CFFAH+P+QLR L        +                       +S   
Sbjct: 163 KDGGNCLRKICFFAHSPDQLRFL-------HTRXXXXXXXXXXXXXXXXXXXXXXISPVS 222

Query: 249 TSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQV 308
            S P+SPR +S   SPM +SL+R   + SIN++V S R+LQ           +S+ +   
Sbjct: 223 GSPPMSPRADS-ESSPMTQSLSRSLGSCSINDVVPSFRNLQF----------NSVKSFPR 282

Query: 309 GSPV--FGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMAR-VESGRDLRAK 368
            +P+  FGSP  S    GF SLP TPT P    LD W+ G  EE  M R VESGR+LR K
Sbjct: 283 NNPLFGFGSPRGSILGPGFQSLPTTPTRPG--NLDIWEYGLEEEPVMERVVESGRELREK 342

Query: 369 MLEKLRKENSV--ACGDQEKPGGGSVDVGWISELL 399
           M EKL KEN +     D ++  G + DVGW+S+LL
Sbjct: 343 MREKLHKENCMDRVAQDPDQNLGEAPDVGWVSDLL 355

[Close]

BLAST of Carg18611 vs. Swiss-Prot
Match: sp|Q9FU27|C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 6.7e-77
Identity = 161/353 (45.61%), Postives = 207/353 (58.64%), Query Frame = 0


Query: 71  LAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECP 130
           +A L+ YLP+ +  V +D +       + VD Y+ D+FRMYEFK+++C RGRSHDWTECP
Sbjct: 40  IAALRDYLPANDVGVGADEEXXXXAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECP 99

Query: 131 FAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPCKD 190
           FAHPGEKARRRDPRKY+YSGTAC DFRKG C +GDACE+AHGVFECWLHPARYRTQPCKD
Sbjct: 100 FAHPGEKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKD 159

Query: 191 GTSCRRRVCFFAHTPEQLRILP--QQSPRSTSSIPSYD-----------GSPLRQAIEAC 250
           GT+CRRRVCFFAHTP+QLR+LP  Q SPRS +S P  +                      
Sbjct: 160 GTACRRRVCFFAHTPDQLRVLPAQQSSPRSVASSPLAEXXXXXXXXXXXXXXXXXXXXXX 219

Query: 251 AKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKV 310
                                    +   R  + P   S +N+++AS R L+L+K     
Sbjct: 220 XXXXXXXXXXXXXXXXXXXXXXXXXAAAIRRGSWPGVGSPVNDVLASFRQLRLNK---VK 279

Query: 311 QSPSSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRY---------LDFWDLG-S 370
            SPS  W+    S V+GSP    A +G  SLP TP                L+  DLG  
Sbjct: 280 SSPSGGWSYPSSSAVYGSP---KAATGLYSLPTTPLASTATVTTASSFMPNLEPLDLGLI 339

Query: 371 GEEQAMARVESGRDLRAKMLEKLRKENSVACGDQE--KPGGGSVDVGWISELL 399
           G+E+ + RVESGR LR K+ E+L ++ +++ GD       G  +DV W+S+L+
Sbjct: 340 GDEEPVQRVESGRALREKVFERLSRDGAIS-GDATAFATAGVGLDVDWVSDLI 385

[Close]

BLAST of Carg18611 vs. Swiss-Prot
Match: sp|O82307|C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 6.9e-74
Identity = 166/380 (43.68%), Postives = 210/380 (55.26%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MMI E  NRP+  +H+P W  + DP +   S                         S  D
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTATISSPFSSVNLN-----------------SVND 60

Query: 61  -GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCL 120
             +SP    ++ A L +YLPS E   +SD  +SG E+    D++SSD+FR+YEFKI++C 
Sbjct: 61  YPHSPSPYLDSFASLFRYLPSNELTNDSD-SSSGDESSPLTDSFSSDEFRIYEFKIRRCA 120

Query: 121 RGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLH 180
           RGRSHDWTECPFAHPGEKARRRDPRK++YSGTAC +FRKG+C +GD+CEF+HGVFECWLH
Sbjct: 121 RGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLH 180

Query: 181 PARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAK 240
           P+RYRTQPCKDGTSCRRR+CFFAHT EQLR+LP               SP          
Sbjct: 181 PSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSP---------- 240

Query: 241 QMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQS 300
                +S   S   SP  ESPP SP            S  E++AS+R +QL+        
Sbjct: 241 -----TSILVSPSFSPPSESPPLSP------------STGELIASMRKMQLNG------- 300

Query: 301 PSSLWNVQVGSPVFGSPGESSARSGFSSL---PDTPTPPAVRYLDFWDLGSGEEQAMARV 360
                    G   + SP  S+ R  FSS        T P +R  +       E  AM  V
Sbjct: 301 ---------GGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEI-----EEAPAMEFV 314

Query: 361 ESGRDLRAKMLEKLRKENSV 377
           ESG++LRA+M  +L +ENS+
Sbjct: 361 ESGKELRAEMYARLSRENSL 314

[Close]

BLAST of Carg18611 vs. Swiss-Prot
Match: sp|Q6L4N4|C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 6.2e-67
Identity = 150/335 (44.78%), Postives = 182/335 (54.33%), Query Frame = 0


Query: 101 DTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGN 160
           D Y+ D+FRMYEFK+++C RGRSHDWTECPFAHPGEKARRRDPR+Y YSGTAC DFRKG 
Sbjct: 71  DAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGG 130

Query: 161 CNKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTS 220
           C +GDACEFAHGVFECWLHPARYRTQPCKDGT+CRRRVCFFAHTP+QLR+LP    + ++
Sbjct: 131 CKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSN 190

Query: 221 S----------------IPSYDGSPL-RQAIEA-------CAKQMPYLSSSGTSTPVSPR 280
           S                  SYDGSPL RQA E+                           
Sbjct: 191 SPRGCXXXXXXXXXSPLAESYDGSPLRRQAFESYLTXXXXXXXXXXXXXXXXXXXXXXXX 250

Query: 281 IESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQVGSPVFGSP 340
                 +   R        S +N++  SLR L+    LG  +S  S  +       +GSP
Sbjct: 251 XXXXXAAGALRRGAWAGVGSPVNDVHVSLRQLR----LGSPRSAPSCASFLPAGYQYGSP 310

Query: 341 ------------GESSARSGFSSLPDTPTPPAVRYLDFWDLG-SGEEQAMARVESGRDLR 399
                                          A   ++  DLG   EEQ M RVESGR LR
Sbjct: 311 KXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGATVTVEPLDLGLIEEEQPMERVESGRALR 370

[Close]

BLAST of Carg18611 vs. TrEMBL
Match: tr|A0A1S3C9K7|A0A1S3C9K7_CUCME (zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103498342 PE=4 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 2.3e-175
Identity = 304/403 (75.43%), Postives = 332/403 (82.38%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           M++ EQP R N  + +PPWTF+ED   D YS                    KCDGCS+G 
Sbjct: 1   MIVGEQPKRTNPTVQIPPWTFLEDTGMDVYS-------HSSPGSGGSSGSVKCDGCSSGG 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
           GYSP+YLQEALAML++YLPS EAE++SD+D SG+E DSPVD YSSDQFRMYEFKIKKC R
Sbjct: 61  GYSPYYLQEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECPFAHPGEKARRRDPR+YYYSGTACADFRKG+C KGDACEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQ 240
           ARYRTQPCKDGTSCRRRVCFFAHTPEQLR+LPQQSPRST+SIPSYDGSPLRQAIEACAKQ
Sbjct: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQ 240

Query: 241 MPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP 300
           MPYLSS GTS PVSPR            LNRPHA SSINEM+ASLR+LQL+KEL KVQSP
Sbjct: 241 MPYLSSPGTSPPVSPRXXXXXXXXXXXXLNRPHAPSSINEMIASLRNLQLNKELCKVQSP 300

Query: 301 --SSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGSGEEQAMARVES 360
             SS WNVQVGSPVFGSP +S+ RSG  SLP+T TPP +RYLDFW+LG GEE AM RVES
Sbjct: 301 SSSSSWNVQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVES 360

Query: 361 GRDLRAKMLEKLRKENSVACGDQEKPGGGS--VDVGWISELLK 400
           GRDLRAKM EKLRKENSV CGDQ+K  GG+  +DVGWISELLK
Sbjct: 361 GRDLRAKMFEKLRKENSVGCGDQDKNSGGAGGLDVGWISELLK 396

[Close]

BLAST of Carg18611 vs. TrEMBL
Match: tr|A0A067KPP4|A0A067KPP4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07335 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.1e-128
Identity = 241/406 (59.36%), Postives = 283/406 (69.70%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MM+DE+ +RPN  +HVPPW  +ED   +GY                          +T  
Sbjct: 1   MMLDER-HRPNTTVHVPPWALIEDANPEGY--------------LSSQLSPHSGNAATAS 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
            Y+P+YLQEALA LQ+YLPS E + +SD + SG E DSPVD +S D FRM+EFK+++C R
Sbjct: 61  DYNPYYLQEALAALQRYLPSNEPDFDSDSEVSGLEPDSPVDAFSCDHFRMFEFKVRRCAR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECP+AHPGEKARRRDPRKY+YSGTAC DFRKGNC KGDACEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEA-CAK 240
            RYRTQPCKDGT+CRRRVCFFAHTPEQLR+LPQQSPRS +S+ SYDGSP RQAIEA CAK
Sbjct: 181 GRYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSVNSVESYDGSPFRQAIEASCAK 240

Query: 241 QMPYLSSSGT-STPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQ 300
            +P+LSS G+ S P            M + L+R   ++SINEM+ASLR+LQ    LGKV+
Sbjct: 241 SLPFLSSPGSISPPAXXXXXXXXXXXMTQCLSRSVGSNSINEMMASLRNLQ----LGKVK 300

Query: 301 SPSSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVR----YLDFWDLGSGEEQAMA 360
           S  + WNVQVG   +GSP  S+ RSGF SLP TPT    R    Y D W+    EE  M 
Sbjct: 301 SLPASWNVQVGGSGYGSPRGSNIRSGFCSLPTTPTSAPTRSGLCYRDVWERVCEEEPPME 360

Query: 361 RVESGRDLRAKMLEKLRKENSVACGDQEK-PGGGSVDVGWISELLK 400
           RVESGRDLR KM EKL KENS+   D +      + DVGW+SELLK
Sbjct: 361 RVESGRDLRVKMFEKLSKENSLGRVDPDPVQSANAPDVGWVSELLK 387

[Close]

BLAST of Carg18611 vs. TrEMBL
Match: tr|A0A2I4GRS1|A0A2I4GRS1_9ROSI (zinc finger CCCH domain-containing protein 20-like OS=Juglans regia OX=51240 GN=LOC109010264 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 4.4e-126
Identity = 242/409 (59.17%), Postives = 278/409 (67.97%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MM+ E P+RPN  +HVPPW   +DP +D Y+                      +  S+G 
Sbjct: 1   MMLGE-PHRPNPTVHVPPWPLQDDPTADMYAPYSLSPLSVNSDG---------NANSSGG 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
            YS +Y+QEAL  LQ+YLPS   +++SD D  GRE+D+PVD YS D FRM+EFK+++C R
Sbjct: 61  DYSSYYIQEALTALQRYLPSNGTDIDSDFDVVGRESDAPVDAYSCDHFRMFEFKVRRCAR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECP+AHPGEKARRRDPRKY+YSGTAC DFRKGNC K DACEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKSDACEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTS----SIPSYDGSPLRQAIEA 240
           ARYRTQPCKDGTSCRRRVCFFAHTPEQLR+LPQQSPRS S    S+ SYDGSPLR AIEA
Sbjct: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSVSNSVNSVESYDGSPLRHAIEA 240

Query: 241 -CAKQMPYLSS-SGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKEL 300
            CAK + +LSS S  S P                      +SSINEM ASLR+LQ    L
Sbjct: 241 TCAKSLSFLSSPSSISPPXXXXXXXXXXXXXXXXXXXXXGSSSINEMAASLRNLQ----L 300

Query: 301 GKVQSPSSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTP----PAVRYLDFWDLGSGEE 360
           GKV+S  S  NV +GSPVFGSP  S  R GF S+P TPT     P + YLD WD    EE
Sbjct: 301 GKVKSLPSSRNVPMGSPVFGSPRGSMLRPGFCSVPTTPTQVPTRPGIGYLDCWDQCCAEE 360

Query: 361 QAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 400
             M RVESGRDLRAKM EKL KENS+    +  P  G  DVGW+SEL+K
Sbjct: 361 PPMERVESGRDLRAKMFEKLSKENSLG-RVETSPSSGGPDVGWVSELVK 394

[Close]

BLAST of Carg18611 vs. TrEMBL
Match: tr|A0A2N9IKS7|A0A2N9IKS7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52602 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.0e-123
Identity = 240/411 (58.39%), Postives = 278/411 (67.64%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTGD 60
           MM+ E P+ PN  +HVPPW   +D  +D YS                      +G +   
Sbjct: 1   MMLGE-PHHPNPTVHVPPWPPHDDLTADMYSPYSLTSLSVNSDG---------NGNANAG 60

Query: 61  GYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLR 120
            YSP+Y+QE +  LQ+YLPS EA+++ D D SGREAD+PVD YS D FRM+EFK+++C R
Sbjct: 61  DYSPYYMQEVMTALQRYLPSNEADLDLDSD-SGREADAPVDAYSCDHFRMFEFKVRRCAR 120

Query: 121 GRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHP 180
           GRSHDWTECP+AHPGEKARRRDPRKY+YSGTAC DFRKGNC KGD CEFAHGVFECWLHP
Sbjct: 121 GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDTCEFAHGVFECWLHP 180

Query: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRIL-PQQSPRS----TSSIPSYDGSPLRQAIE 240
           ARYRTQPCKDGTSCRRRVCFFAHTPEQLR+L PQQSPRS    T+S+ SYDGSP R AIE
Sbjct: 181 ARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPPQQSPRSVNSVTNSVESYDGSPFRHAIE 240

Query: 241 A-CAKQMPYLSS-SGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKE 300
           A CAK +P++SS S  S P                        SINEMVASLR+LQ    
Sbjct: 241 ASCAKTLPFMSSPSSISPPXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLQ---- 300

Query: 301 LGKVQSPSSLWNVQVGSPVFGSPGESSARSGFSSLPDT-----PTPPAVRYLDFWDLGSG 360
           LGKV+S  S WNVQ+GS  FGSP  S  R GF S+P T     PT P + Y D W+ G  
Sbjct: 301 LGKVKSLPSSWNVQIGSSGFGSPRGSILRPGFCSMPTTPTRTAPTRPGIGYFDLWEQGCE 360

Query: 361 EEQAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 400
           EE  M RVESGRD+RAKM EKLR+ENS+   D   P   S DVGW+SEL+K
Sbjct: 361 EEPPMERVESGRDIRAKMFEKLREENSLGRVD-PSPSTNSPDVGWVSELVK 395

[Close]

BLAST of Carg18611 vs. TrEMBL
Match: tr|A0A2P5FS11|A0A2P5FS11_9ROSA (Zinc finger, CCCH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_036600 PE=4 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.3e-122
Identity = 244/406 (60.10%), Postives = 285/406 (70.20%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTF-MEDPASDGYSXXXXXXXXXXXXXXXXXXXXKCDGCSTG 60
           MM+ EQ +RPN  +HVPPW   +EDP ++ YS                        C+ G
Sbjct: 1   MMLGEQ-HRPNPTVHVPPWNLTVEDPTAEMYSPFPLSGVSVN------------SDCNGG 60

Query: 61  DGYSPFYLQEALAMLQQYLPS-KEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKC 120
           D YSP+YLQEAL+ L  YLPS  + +++SD D SGRE+DSP+D YS DQFRM+EFK+++C
Sbjct: 61  D-YSPYYLQEALSALSPYLPSANDPDIDSDSDVSGRESDSPIDAYSCDQFRMFEFKVRRC 120

Query: 121 LRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWL 180
            RGRSHDWTECP+AHPGEKARRRDPRKY+YSGTAC DFRKG+C KGD+CEFAHGVFECWL
Sbjct: 121 ARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGHCKKGDSCEFAHGVFECWL 180

Query: 181 HPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRS-TSSIPSYDGSPLRQAIEAC 240
           HPARYRTQPCKDGTSCRRRVCFFAHTP+QLR+LPQQSP++ ++S  SYDGSPLR      
Sbjct: 181 HPARYRTQPCKDGTSCRRRVCFFAHTPDQLRVLPQQSPKAGSNSAESYDGSPLR------ 240

Query: 241 AKQMPYLSS-SGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGK 300
            K +P+LSS S  S P +            + L+R   +SSINEMVASLR+LQ    LGK
Sbjct: 241 -KTLPFLSSPSSISPPATXXXXXXXXXXXTQVLSRSLGSSSINEMVASLRNLQ----LGK 300

Query: 301 VQSPSSLWNVQV-GSPVFGSPGESSARSGFSSLPDTPT--PPAVRYLDFWDLGSGEEQAM 360
           V+S  S WN Q  GSP FGSP  S  R GF SLP TPT  P    YLDF D    EE AM
Sbjct: 301 VKSLPSCWNTQKGGSPGFGSPRGSLLRPGFCSLPTTPTRGPARPSYLDFCDPTLEEEPAM 360

Query: 361 ARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 400
            RVESGRDLRAKMLEKL KENS+   D   P  G+ DVGW+SEL+K
Sbjct: 361 ERVESGRDLRAKMLEKLSKENSLDRVD-PNPSAGAPDVGWVSELVK 380

The following BLAST results are available for this feature:

BLAST of Carg18611 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536933.1	1.4e-221	99.00	zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937473.1	2.7e-220	98.50	zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata]	[more]
XP_022965788.1	2.0e-218	93.48	zinc finger CCCH domain-containing protein 20-like isoform X2 [Cucurbita maxima]	[more]
XP_022965787.1	2.0e-218	97.99	zinc finger CCCH domain-containing protein 20-like isoform X1 [Cucurbita maxima]	[more]
XP_008459142.1	3.5e-175	75.43	PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis melo]	[more]

BLAST of Carg18611 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19810.1	1.5e-95	48.89	CCCH-type zinc finger family protein	[more]
AT4G29190.1	2.6e-87	52.54	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	3.8e-75	43.68	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G03790.1	8.3e-54	54.79	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT5G44260.1	5.4e-53	50.23	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

BLAST of Carg18611 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82199\|C3H20_ARATH	2.7e-94	48.89	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9M0G2\|C3H49_ARATH	4.6e-86	52.54	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q9FU27\|C3H2_ORYSJ	6.7e-77	45.61	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|O82307\|C3H23_ARATH	6.9e-74	43.68	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|Q6L4N4\|C3H35_ORYSJ	6.2e-67	44.78	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Carg18611 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C9K7\|A0A1S3C9K7_CUCME	2.3e-175	75.43	zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A067KPP4\|A0A067KPP4_JATCU	2.1e-128	59.36	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07335 PE=4 SV=1	[more]
tr\|A0A2I4GRS1\|A0A2I4GRS1_9ROSI	4.4e-126	59.17	zinc finger CCCH domain-containing protein 20-like OS=Juglans regia OX=51240 GN=...	[more]
tr\|A0A2N9IKS7\|A0A2N9IKS7_FAGSY	6.0e-123	58.39	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52602 PE=4 SV=1	[more]
tr\|A0A2P5FS11\|A0A2P5FS11_9ROSA	1.3e-122	60.10	Zinc finger, CCCH-type OS=Trema orientalis OX=63057 GN=TorRG33x02_036600 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18611-RA	Carg18611-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 147..173 e-value: 4.1E-4 score: 29.7 coord: 182..205 e-value: 14.0 score: 7.1
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 152..172 e-value: 4.2E-5 score: 23.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 147..174 score: 12.934
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 182..206 score: 6.643
None	No IPR available	GENE3D	G3DSA:4.10.1000.10		coord: 145..218 e-value: 9.9E-8 score: 33.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..264
None	No IPR available	PANTHER	PTHR14493:SF74	RING FINGER PROTEIN UNKEMPT	coord: 72..291
None	No IPR available	PANTHER	PTHR14493	UNCHARACTERIZED	coord: 72..291

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18611	Cla016816	Watermelon (97103) v1	carwmB0898
Carg18611	Csa2G000630	Cucumber (Chinese Long) v2	carcuB0914
Carg18611	MELO3C004610	Melon (DHL92) v3.5.1	carmeB0883
Carg18611	ClCG11G001920	Watermelon (Charleston Gray)	carwcgB0873
Carg18611	CSPI02G00610	Wild cucumber (PI 183967)	carcpiB0934
Carg18611	Cucsa.116850	Cucumber (Gy14) v1	carcgyB1014
Carg18611	CmaCh12G012840	Cucurbita maxima (Rimu)	carcmaB1236
Carg18611	CmoCh12G013190	Cucurbita moschata (Rifu)	carcmoB1207
Carg18611	CmoCh11G006830	Cucurbita moschata (Rifu)	carcmoB1206
Carg18611	Lsi11G002040	Bottle gourd (USVL1VR-Ls)	carlsiB815
Carg18611	Cp4.1LG07g10590	Cucurbita pepo (Zucchini)	carcpeB1248
Carg18611	CsGy2G000570	Cucumber (Gy14) v2	carcgybB0886
Carg18611	MELO3C015436.2	Melon (DHL92) v3.6.1	carmedB0890
Carg18611	MELO3C004610.2	Melon (DHL92) v3.6.1	carmedB0891
Carg18611	CsaV3_2G001650	Cucumber (Chinese Long) v3	carcucB0937
Carg18611	Cla97C11G208310	Watermelon (97103) v2	carwmbB0936
Carg18611	Bhi06G001434	Wax gourd	carwgoB1041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18611	Silver-seed gourd	carcarB046
Carg18611	Silver-seed gourd	carcarB108
Carg18611	Silver-seed gourd	carcarB238
Carg18611	Silver-seed gourd	carcarB528
Carg18611	Cucumber (Gy14) v2	carcgybB0881
Carg18611	Cucumber (Gy14) v2	carcgybB0882
Carg18611	Cucumber (Gy14) v1	carcgyB1016
Carg18611	Cucumber (Gy14) v1	carcgyB1017
Carg18611	Cucurbita maxima (Rimu)	carcmaB1234
Carg18611	Cucurbita maxima (Rimu)	carcmaB1235
Carg18611	Cucurbita maxima (Rimu)	carcmaB1237
Carg18611	Cucurbita moschata (Rifu)	carcmoB1205
Carg18611	Cucurbita moschata (Rifu)	carcmoB1208
Carg18611	Cucurbita pepo (Zucchini)	carcpeB1244
Carg18611	Cucurbita pepo (Zucchini)	carcpeB1245
Carg18611	Cucurbita pepo (Zucchini)	carcpeB1246
Carg18611	Cucurbita pepo (Zucchini)	carcpeB1247
Carg18611	Wild cucumber (PI 183967)	carcpiB0929
Carg18611	Wild cucumber (PI 183967)	carcpiB0931
Carg18611	Cucumber (Chinese Long) v2	carcuB0909
Carg18611	Cucumber (Chinese Long) v2	carcuB0911
Carg18611	Cucumber (Chinese Long) v3	carcucB0932
Carg18611	Cucumber (Chinese Long) v3	carcucB0934
Carg18611	Bottle gourd (USVL1VR-Ls)	carlsiB812
Carg18611	Bottle gourd (USVL1VR-Ls)	carlsiB817
Carg18611	Melon (DHL92) v3.5.1	carmeB0882
Carg18611	Melon (DHL92) v3.5.1	carmeB0885
Carg18611	Melon (DHL92) v3.6.1	carmedB0893
Carg18611	Watermelon (Charleston Gray)	carwcgB0870
Carg18611	Watermelon (Charleston Gray)	carwcgB0875
Carg18611	Watermelon (97103) v1	carwmB0897
Carg18611	Watermelon (97103) v1	carwmB0900
Carg18611	Watermelon (97103) v2	carwmbB0933
Carg18611	Watermelon (97103) v2	carwmbB0938
Carg18611	Watermelon (97103) v2	carwmbB0940
Carg18611	Wax gourd	carwgoB1039
Carg18611	Wax gourd	carwgoB1043