Carg18518 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18518
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	EPIDERMAL PATTERNING FACTOR-like protein 2
Location	Cucurbita_argyrosperma_scaffold_109 : 235632 .. 237202 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAGAAATGAAAGAGAAAGAGAAAATAAAAGGGAAACGAAAACGAAATCCCACTCGTACACAGCTGCCATTGCGCTGCTCACATCTGCTAATTTGTTCTGTTTAACTCTGTTTTTTAGGCTCTTCTTTCGAGTTCTGAGGAGCTCTGCAATTTTCGGTACTCTCTGCAATCTTTTTCCCTTTTCTTTTTCTTTTTGTCTTCCATGTTCCATCATCTCAAATATCATTCTCAGACTAAGATAGATTCAGAGGGAATTCATTTTATATGATATGCACGTACGAGCAGTATAGAGTGAAAAATCAGAAGCTAATCTCACTTTTCTCTCCCCATCTCTCTGTTAGAACGAAAAGAAAAATGGGGTGTGAGTGCAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTCTTTCTTTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGTAAATGGGTATCTCTTGAAACTTCAAAAAAGAGTCCGAAACCAAAATTCTTGAACTGAATTCTTGTGAATCGTTTTCCTTTGCAGGCAGATCTATTCCAAAGAGTGGCAAGGTCAGTCCACAAGGCCAGCCCTTTCCTCTCTTTTTGATTCATTTACTGTTTCTGAAAGCTTGATTGTTAAGAAGAAATTTGGTTTTTGTTTTGGTGAATTGGGATAGACAGTGAGTGAAGATAAAGTGGTATTACGAGGACAAATTGGGTCAAGGCCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGCACACTGTGAGGCCATTCAAGTTCCTGCAAACCCACAAAAGTCTTCAACATTGAAGAACATAGCTTATGCTAGAGATGAAGCCTCAAATTACAAACCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAAGTAGATGATCATCATCAACTCTGTAAATTAGTGATTATATGATTGTTTCTTTCACTTAACACTCTCTAGATATCTCTCTCTTTTGTTCTGACACTCTTGAGGGTTGAAAGCAGGCATTTGATGAAGAGAATTATGAACTGGGTTTCTTTTCTAACATGCAACTACTTCGGATTCCTTCCATATCAGTTTCATCTTGAAACACTTAAATGGGATAACTCATGAACAGTTTGATTAAGTATAGAAAAGTGGGTGTAAATTGAATGGGAGAGAGAGAGTGAATTTGATTCATTTGAAGGGTGGTGATTGGAATGAAGAGATCAGAAAAAGAGAGTGAAAGAAATGGCTTGTGATCATGGCAGACCAGACCCCACTGAGCTGTGCCTCTGCCTTAAAAACGTCGAGGTGTGCTTGGTGGGTAGCCATTATCCCTCACCTTGTTCCTTTTAGGCTGCCTCGAAGAGTCGTTCTGTCTTGAACTTAAGTAATGGATTCACAGTCTTCGCTTTCATGGGTTAGGTTTCTATCATTGGACTGCAAGTATACTAAAGCCATCAATCTTCCTATTTTCTTTCTTTTTATGCAGACAAGACAACACAAGTGGTACTCGACTAAACCCAAATCTGTTAGATGCTTATAGGAAACACATATGTTCTC

mRNA sequence

ACCAGAAATGAAAGAGAAAGAGAAAATAAAAGGGAAACGAAAACGAAATCCCACTCGTACACAGCTGCCATTGCGCTGCTCACATCTGCTAATTTGTTCTGTTTAACTCTGTTTTTTAGGCTCTTCTTTCGAGTTCTGAGGAGCTCTGCAATTTTCGAACGAAAAGAAAAATGGGGTGTGAGTGCAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTCTTTCTTTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGCAGATCTATTCCAAAGAGTGGCAAGACAGTGAGTGAAGATAAAGTGGTATTACGAGGACAAATTGGGTCAAGGCCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGCACACTGTGAGGCCATTCAAGTTCCTGCAAACCCACAAAAGTCTTCAACATTGAAGAACATAGCTTATGCTAGAGATGAAGCCTCAAATTACAAACCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAAGTAGATGATCATCATCAACTCTGTAAATTAGTGATTATATGATTGTTTCTTTCACTTAACACTCTCTAGATATCTCTCTCTTTTGTTCTGACACTCTTGAGGGTTGAAAGCAGGCATTTGATGAAGAGAATTATGAACTGGGTTTCTTTTCTAACATGCAACTACTTCGGATTCCTTCCATATCAGTTTCATCTTGAAACACTTAAATGGGATAACTCATGAACAGTTTGATTAAGTATAGAAAAGTGGGTGTAAATTGAATGGGAGAGAGAGAGTGAATTTGATTCATTTGAAGGGTGGTGATTGGAATGAAGAGATCAGAAAAAGAGAGTGAAAGAAATGGCTTGTGATCATGGCAGACCAGACCCCACTGAGCTGTGCCTCTGCCTTAAAAACGTCGAGGTGTGCTTGGTGGGTAGCCATTATCCCTCACCTTGTTCCTTTTAGGCTGCCTCGAAGAGTCGTTCTGTCTTGAACTTAAGTAATGGATTCACAGTCTTCGCTTTCATGGGTTAGGTTTCTATCATTGGACTGCAAGTATACTAAAGCCATCAATCTTCCTATTTTCTTTCTTTTTATGCAGACAAGACAACACAAGTGGTACTCGACTAAACCCAAATCTGTTAGATGCTTATAGGAAACACATATGTTCTC

Coding sequence (CDS)

ATGGGGTGTGAGTGCAACAACAATGGCGTCATTGGCCGCAGTAGAATCTTGTGTGCGACTCTTTCTTTTCTCTTTTTTCTGATTTTGGCATCGACCCAGATGAGATTCATGGCTGAAGGCAGATCTATTCCAAAGAGTGGCAAGACAGTGAGTGAAGATAAAGTGGTATTACGAGGACAAATTGGGTCAAGGCCTCCAAAATGTGAGAGAAGATGCAGCTGGTGTGCACACTGTGAGGCCATTCAAGTTCCTGCAAACCCACAAAAGTCTTCAACATTGAAGAACATAGCTTATGCTAGAGATGAAGCCTCAAATTACAAACCCATGAGCTGGAAATGCAAATGTGGGAGCTTAATCTTCAACCCTTAA

Protein sequence

MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIFNP

Homology

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: XP_023518504.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 2.6e-65
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ
Sbjct: 31  MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 90

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSST+KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 91  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTMKNIAYARDEASNYKPMSWKCKCGSLIF 150

Query: 121 NP 123
           NP
Sbjct: 151 NP 152

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: XP_023518506.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 2.6e-65
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ
Sbjct: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSST+KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTMKNIAYARDEASNYKPMSWKCKCGSLIF 120

Query: 121 NP 123
           NP
Sbjct: 121 NP 122

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: XP_022963149.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata])

HSP 1 Score: 251.1 bits (640), Expect = 1.9e-63
Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGRSRILCAT+SFLFFLILASTQMRFMAEGRSI KSGKTVSEDKVVLRGQ
Sbjct: 55  MGCECNNNGVIGRSRILCATVSFLFFLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 114

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSS +KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 115 IGSRPPKCERRCSWCAHCEAIQVPANPQKSSAMKNIAYARDEASNYKPMSWKCKCGSLIF 174

Query: 121 NP 123
           NP
Sbjct: 175 NP 176

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: XP_023003266.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 9.3e-63
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGR RILCAT+SFLF LILASTQMRFMAEGRSI KSGKTVSEDKVVLRGQ
Sbjct: 30  MGCECNNNGVIGRCRILCATVSFLFLLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 89

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSST+KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 90  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTMKNIAYARDEASNYKPMSWKCKCGSLIF 149

Query: 121 NP 123
           NP
Sbjct: 150 NP 151

[Close]

BLAST of Carg18518 vs. NCBI nr
Match: XP_023003267.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 9.3e-63
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTVSEDKVVLRGQ 60
           MGCECNNNGVIGR RILCAT+SFLF LILASTQMRFMAEGRSI KSGKTVSEDKVVLRGQ
Sbjct: 1   MGCECNNNGVIGRCRILCATVSFLFLLILASTQMRFMAEGRSISKSGKTVSEDKVVLRGQ 60

Query: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIF 120
           IGSRPPKCERRCSWCAHCEAIQVPANPQKSST+KNIAYARDEASNYKPMSWKCKCGSLIF
Sbjct: 61  IGSRPPKCERRCSWCAHCEAIQVPANPQKSSTMKNIAYARDEASNYKPMSWKCKCGSLIF 120

Query: 121 NP 123
           NP
Sbjct: 121 NP 122

[Close]

BLAST of Carg18518 vs. TAIR10
Match: AT4G37810.1 (unknown protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23
Identity = 60/117 (51.28%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 24  LFFLILASTQMRFMAEGRSIPKS---GKTVSED-KVVLRGQIGSRPPKCER-RCSWCAHC 83
           L  LIL ST    MA GR  P S    K+  +D K+++RG IGSRPP+CER RC  C HC
Sbjct: 12  LILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGHC 71

Query: 84  EAIQVPANPQ------------KSSTLKNIAYAR-DEASNYKPMSWKCKCGSLIFNP 123
           EAIQVP NPQ             SS   ++ Y R D+++NYKPMSWKCKCG+ I+NP
Sbjct: 72  EAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Carg18518 vs. TAIR10
Match: AT5G10310.1 (unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 29/78 (37.18%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 58  RGQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLK-------------NIAYARDEAS 117
           + ++GS PP C  RC+ C  C AIQVP  P +S   +             ++    D+ S
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 104

Query: 118 NYKPMSWKCKCGSLIFNP 123
           NYKPM WKC C    +NP
Sbjct: 105 NYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Carg18518 vs. TAIR10
Match: AT3G13898.1 (unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-08
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 60  QIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKC 116
           +IGS+PP CE++C  C  CEAIQ P       T+ +I +     +NY+P  W+C C
Sbjct: 56  RIGSKPPSCEKKCYGCEPCEAIQFP-------TISSIPHLSPHYANYQPEGWRCHC 104

[Close]

BLAST of Carg18518 vs. TAIR10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1))

HSP 1 Score: 53.1 bits (126), Expect = 1.4e-07
Identity = 37/116 (31.90%), Postives = 49/116 (42.24%), Query Frame = 0


Query: 13  RSRILCATLSFLFFLILASTQMRFMAEGRSIPK------SGKTVSEDKVVLRGQIGSRPP 72
           R R L A L     L L S      A+GR I +       G  +  +K    G  GS PP
Sbjct: 7   RRRFLLAALVTFALLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRF--GGPGSSPP 66

Query: 73  KCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIFNP 123
            C  +C  C  C+ + VP  P  S  L+           Y P +W+CKCG+ +F P
Sbjct: 67  TCRSKCGKCQPCKPVHVPIQPGLSMPLE-----------YYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Carg18518 vs. TAIR10
Match: AT3G22820.1 (allergen-related)

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 23/64 (35.94%), Postives = 31/64 (48.44%), Query Frame = 0


Query: 59  GQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSL 118
           G  GS PP C  +C  C  C+A+ VP  P     L+           Y P +W+CKCG+ 
Sbjct: 55  GGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLE-----------YYPEAWRCKCGNK 107

Query: 119 IFNP 123
           +F P
Sbjct: 115 LFMP 107

[Close]

BLAST of Carg18518 vs. Swiss-Prot
Match: sp|Q9T068|EPFL2_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EPFL2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-22
Identity = 60/117 (51.28%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 24  LFFLILASTQMRFMAEGRSIPKS---GKTVSED-KVVLRGQIGSRPPKCER-RCSWCAHC 83
           L  LIL ST    MA GR  P S    K+  +D K+++RG IGSRPP+CER RC  C HC
Sbjct: 12  LILLILNSTHFSLMANGRPEPDSVEFTKSGDQDVKMMMRGLIGSRPPRCERVRCRSCGHC 71

Query: 84  EAIQVPANPQ------------KSSTLKNIAYAR-DEASNYKPMSWKCKCGSLIFNP 123
           EAIQVP NPQ             SS   ++ Y R D+++NYKPMSWKCKCG+ I+NP
Sbjct: 72  EAIQVPTNPQTKLHSPLTTSSSSSSETIHLDYTRGDDSTNYKPMSWKCKCGNSIYNP 128

[Close]

BLAST of Carg18518 vs. Swiss-Prot
Match: sp|Q9LFT5|EPFL1_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 29/78 (37.18%), Postives = 39/78 (50.00%), Query Frame = 0


Query: 58  RGQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLK-------------NIAYARDEAS 117
           + ++GS PP C  RC+ C  C AIQVP  P +S   +             ++    D+ S
Sbjct: 45  KARLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYS 104

Query: 118 NYKPMSWKCKCGSLIFNP 123
           NYKPM WKC C    +NP
Sbjct: 105 NYKPMGWKCHCNGHFYNP 122

[Close]

BLAST of Carg18518 vs. Swiss-Prot
Match: sp|C4B8C4|EPFL3_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.8e-07
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 60  QIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKC 116
           +IGS+PP CE++C  C  CEAIQ P       T+ +I +     +NY+P  W+C C
Sbjct: 56  RIGSKPPSCEKKCYGCEPCEAIQFP-------TISSIPHLSPHYANYQPEGWRCHC 104

[Close]

BLAST of Carg18518 vs. Swiss-Prot
Match: sp|Q2V3I3|EPFL4_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 37/116 (31.90%), Postives = 49/116 (42.24%), Query Frame = 0


Query: 13  RSRILCATLSFLFFLILASTQMRFMAEGRSIPK------SGKTVSEDKVVLRGQIGSRPP 72
           R R L A L     L L S      A+GR I +       G  +  +K    G  GS PP
Sbjct: 7   RRRFLLAALVTFALLHLFSASSIVSADGRWIGQRTGSDLPGGFIRSNKRF--GGPGSSPP 66

Query: 73  KCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSLIFNP 123
            C  +C  C  C+ + VP  P  S  L+           Y P +W+CKCG+ +F P
Sbjct: 67  TCRSKCGKCQPCKPVHVPIQPGLSMPLE-----------YYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Carg18518 vs. Swiss-Prot
Match: sp|Q9LUH9|EPFL5_ARATH (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.5e-05
Identity = 23/64 (35.94%), Postives = 31/64 (48.44%), Query Frame = 0


Query: 59  GQIGSRPPKCERRCSWCAHCEAIQVPANPQKSSTLKNIAYARDEASNYKPMSWKCKCGSL 118
           G  GS PP C  +C  C  C+A+ VP  P     L+           Y P +W+CKCG+ 
Sbjct: 55  GGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLE-----------YYPEAWRCKCGNK 107

Query: 119 IFNP 123
           +F P
Sbjct: 115 LFMP 107

[Close]

BLAST of Carg18518 vs. TrEMBL
Match: tr|A0A0A0KGK0|A0A0A0KGK0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497000 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.6e-53
Identity = 110/131 (83.97%), Postives = 115/131 (87.79%), Query Frame = 0


Query: 1   MGCECNNNGVIG-RSR-ILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTV--SEDKVV 60
           MGCEC NNGVIG RSR ILC  +S LFFLILASTQMRFMAEGR I ++GKTV  SEDK+V
Sbjct: 1   MGCECINNGVIGRRSRIILCPIVSLLFFLILASTQMRFMAEGRFISRNGKTVNNSEDKMV 60

Query: 61  LRGQIGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSTLKNIAYARDEASNYKPMSW 120
           LRGQIGSRPPKCERRCSWC HCEAIQVPANPQK     SST+KNIAYARDEASNYKPMSW
Sbjct: 61  LRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAYARDEASNYKPMSW 120

Query: 121 KCKCGSLIFNP 123
           KCKCGSLIFNP
Sbjct: 121 KCKCGSLIFNP 131

[Close]

BLAST of Carg18518 vs. TrEMBL
Match: tr|A0A1S3B1V9|A0A1S3B1V9_CUCME (EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103484886 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.2e-52
Identity = 109/131 (83.21%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MGCECNNNGVIG-RSR-ILCATLSFLFFLILASTQMRFMAEGRSIPKSGKTV--SEDKVV 60
           MGCEC NNGVIG RSR ILC  +S LFFLIL STQMRFMAEGR I ++GKTV  SEDK+V
Sbjct: 1   MGCECINNGVIGRRSRIILCPIVSLLFFLILVSTQMRFMAEGRFISRNGKTVNNSEDKMV 60

Query: 61  LRGQIGSRPPKCERRCSWCAHCEAIQVPANPQK-----SSTLKNIAYARDEASNYKPMSW 120
           LRGQIGSRPPKCERRCSWC HCEAIQVPANPQK     SST+KNIAYARDEASNYKPMSW
Sbjct: 61  LRGQIGSRPPKCERRCSWCGHCEAIQVPANPQKSGTKNSSTMKNIAYARDEASNYKPMSW 120

Query: 121 KCKCGSLIFNP 123
           KCKCGSLIFNP
Sbjct: 121 KCKCGSLIFNP 131

[Close]

BLAST of Carg18518 vs. TrEMBL
Match: tr|B9T176|B9T176_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0338850 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-36
Identity = 80/135 (59.26%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 1   MGC-ECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKS---GKTVSEDKVV 60
           MGC +C ++  +   R+   T+SF+F LI +STQ+RF AEGR+ PKS    +TV+E+K++
Sbjct: 1   MGCSDCTHHSFLLCQRLGYVTISFMFLLISSSTQVRFKAEGRATPKSASFSQTVNEEKML 60

Query: 61  LRGQIGSRPPKCERRCSWCAHCEAIQVPANPQ--------KSSTLKNIAYAR-DEASNYK 120
           +R QIGSRPP+CE+RCS C HCEAIQVP NPQ         SST  N+AYAR D+ASNYK
Sbjct: 61  MRSQIGSRPPRCEKRCSTCGHCEAIQVPTNPQINHGNRNYSSSTFSNVAYARGDDASNYK 120

Query: 121 PMSWKCKCGSLIFNP 123
           PMSWKCKCG LIFNP
Sbjct: 121 PMSWKCKCGDLIFNP 135

[Close]

BLAST of Carg18518 vs. TrEMBL
Match: tr|A0A067K7N5|A0A067K7N5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12593 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 78/132 (59.09%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFLILASTQMRFMAEGRSIPKS---GKTVSEDKVVL 60
           MGC      +    R+ C ++SFLF LI +ST +RF AEGR+ PKS     T +E+K+++
Sbjct: 1   MGCTTTPPNLFLCQRLRCLSISFLFLLISSSTHLRFKAEGRANPKSAGVSGTENEEKMIM 60

Query: 61  RGQIGSRPPKCERRCSWCAHCEAIQVPANPQKS------STLKNIAYAR-DEASNYKPMS 120
           R QIGSRPP+CERRCS C HCEAIQVP NPQ +      S++ NIAYAR D ASNYKPMS
Sbjct: 61  RSQIGSRPPRCERRCSSCGHCEAIQVPTNPQVNHGNRNYSSVSNIAYARGDGASNYKPMS 120

Query: 121 WKCKCGSLIFNP 123
           WKCKCG LIFNP
Sbjct: 121 WKCKCGDLIFNP 132

[Close]

BLAST of Carg18518 vs. TrEMBL
Match: tr|A0A2P5AGH0|A0A2P5AGH0_PARAD (EPIDERMAL PATTERNING FACTOR-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_334640 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.3e-33
Identity = 80/135 (59.26%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 1   MGCECNNNGVIGRSRILCATLSFLFFL-ILASTQMRFMAEGRSIPKS---GKTVSEDKVV 60
           MGC+ +    +  SR LC    +L FL IL+STQ+RFMA+GR IPK     +TVSEDK +
Sbjct: 1   MGCKQS----LRYSRRLCYLALYLLFLSILSSTQLRFMAQGREIPKEKNFSQTVSEDKAI 60

Query: 61  LRGQIGSRPPKCERRCSWCAHCEAIQVPANPQ-------KSSTLKNIAYAR--DEASNYK 120
           +R +IGSRPP+CERRCS C HCEAIQVP NPQ       KSS + N+ YAR  D  SNYK
Sbjct: 61  VRARIGSRPPRCERRCSSCVHCEAIQVPTNPQVKSGTSKKSSKVSNVEYARGDDNNSNYK 120

Query: 121 PMSWKCKCGSLIFNP 123
           PMSWKCKCG+ IFNP
Sbjct: 121 PMSWKCKCGNFIFNP 131

The following BLAST results are available for this feature:

BLAST of Carg18518 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518504.1	2.6e-65	99.18	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_023518506.1	2.6e-65	99.18	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita pepo subsp. pep...	[more]
XP_022963149.1	1.9e-63	96.72	EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita moschata]	[more]
XP_023003266.1	9.3e-63	95.90	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Cucurbita maxima]	[more]
XP_023003267.1	9.3e-63	95.90	EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg18518 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37810.1	1.8e-23	51.28	unknown protein	[more]
AT5G10310.1	1.0e-10	37.18	unknown protein	[more]
AT3G13898.1	2.1e-08	41.07	unknown protein	[more]
AT4G14723.1	1.4e-07	31.90	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1)	[more]
AT3G22820.1	2.0e-06	35.94	allergen-related	[more]

BLAST of Carg18518 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9T068\|EPFL2_ARATH	3.2e-22	51.28	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
sp\|Q9LFT5\|EPFL1_ARATH	1.8e-09	37.18	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
sp\|C4B8C4\|EPFL3_ARATH	3.8e-07	41.07	EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
sp\|Q2V3I3\|EPFL4_ARATH	2.5e-06	31.90	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
sp\|Q9LUH9\|EPFL5_ARATH	3.5e-05	35.94	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Carg18518 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGK0\|A0A0A0KGK0_CUCSA	7.6e-53	83.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497000 PE=4 SV=1	[more]
tr\|A0A1S3B1V9\|A0A1S3B1V9_CUCME	2.2e-52	83.21	EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Cucumis melo OX=3656 GN=LOC1034848...	[more]
tr\|B9T176\|B9T176_RICCO	2.2e-36	59.26	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0338850 PE=4 SV=1	[more]
tr\|A0A067K7N5\|A0A067K7N5_JATCU	2.1e-34	59.09	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12593 PE=4 SV=1	[more]
tr\|A0A2P5AGH0\|A0A2P5AGH0_PARAD	2.3e-33	59.26	EPIDERMAL PATTERNING FACTOR-like protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18518-RA	Carg18518-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 61..122 e-value: 3.4E-17 score: 62.1
None	No IPR available	PANTHER	PTHR33109	FAMILY NOT NAMED	coord: 10..122
None	No IPR available	PANTHER	PTHR33109:SF7	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 2	coord: 10..122

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18518	Cla014062	Watermelon (97103) v1	carwmB0005
Carg18518	Csa6G497000	Cucumber (Chinese Long) v2	carcuB0003
Carg18518	MELO3C007667	Melon (DHL92) v3.5.1	carmeB0002
Carg18518	ClCG01G017930	Watermelon (Charleston Gray)	carwcgB0002
Carg18518	CSPI06G29250	Wild cucumber (PI 183967)	carcpiB0003
Carg18518	Cucsa.103510	Cucumber (Gy14) v1	carcgyB0001
Carg18518	CmaCh07G006200	Cucurbita maxima (Rimu)	carcmaB0004
Carg18518	CmaCh03G008770	Cucurbita maxima (Rimu)	carcmaB0003
Carg18518	CmoCh07G006230	Cucurbita moschata (Rifu)	carcmoB0005
Carg18518	CmoCh03G009180	Cucurbita moschata (Rifu)	carcmoB0004
Carg18518	Lsi01G008560	Bottle gourd (USVL1VR-Ls)	carlsiB001
Carg18518	Cp4.1LG10g01810	Cucurbita pepo (Zucchini)	carcpeB0001
Carg18518	Cp4.1LG19g10480	Cucurbita pepo (Zucchini)	carcpeB0002
Carg18518	CsGy6G028800	Cucumber (Gy14) v2	carcgybB0003
Carg18518	MELO3C007667.2	Melon (DHL92) v3.6.1	carmedB0003
Carg18518	CsaV3_6G044450	Cucumber (Chinese Long) v3	carcucB0003
Carg18518	Cla97C01G017150	Watermelon (97103) v2	carwmbB0002
Carg18518	Bhi03G000831	Wax gourd	carwgoB0003

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18518	Carg00760	Silver-seed gourd	carcarB001

The following block(s) are covering this gene:

None