Carg18460 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18460
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Prefoldin subunit
Location	Cucurbita_argyrosperma_scaffold_161 : 362272 .. 366570 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGGTTGCTTCAATTGGAGTCAAACACAAGAACTACCAAGAAGCACGACACCCACAGTCGGATACAGATGGTGATAGCTGAACGACTAATTAACCTTGTGAAGCAAGAGAAAAATGGAAGCCCTCGATTCACCGGATGCTGCTGATCCAATTTTACTCATAAACAATTGCAAATAGTTCGTTCCAGCCCTGTACAAAAGTTAGAACGCCTCGCAATTTGCATAAAGAAATACAATATCGTATAATTTATTCCTTCGTTGTTTTGTGTATTGGCCTATTGGGGCCAAGGAGCTCGCGTGCGTGTTTCTCCTGGCGCGAAGCTGGGTGGATTAGAGGCCGCTAATGGTTGACTAATCAAATAATCTTCGCTTCTTCCGTTGTCAAAAACCTTTTCTTTCTTAATTTAAATAAAAAAAGGTTAAGTTTAATGTAAGTGACTATTTTTCATTGTAAGCCTAAGCCAAGCCAAGCCCAAATAAAATAAAATAAAATAAAAAATCGTATTTTTATCCCCAAAATATTCGACCCTCCAAATCTTTATTTCCATTAATAAGCTTCCGGTTCTTGTTGTCTGAGTTAATCGCAAGCAAGCCGTCGAGGTCGCCGCGCTGTCTGAGTTCTGTCATCGTCGAGCTGGCTGCGTGAGGTTGAAGCGCTACCCAATTCTTGAGGTTTAAGGGGTGAGTTTAGAAATTAATGCGGATTAGGGCTGTGTTTAAAAGTGGTTTTTGATCTCTTTTGCCCCCTTAAAATTTGTCTTCATTTTGACAATTGCCCCGACTCGAATCACAGAGCGGGATGATCATGGAAGGAGGAGGAGGAGGAGCAAAGGGAACGGTGGCGGCGCTGTCCTCATTATTTCCGGCACAGGATGCCCACAAGGCAGCGATGCGCGTCCAAGATGCGATTTCTGAGAAGCAGAGGGAGCTTGAGCATCTCCGAGGTTTCATCTCTGATAATGCTAACCTGATCAACCTTGTCCAGAAATTACCTGAAGAGCTGCACCATGAAGTCATGGTACTTTTGCTTCTTCCTTTGAGTTGGGTGTTGAGTGTTTTCAGCGTTGTTTTTTGATAGCAAAAGAAAATTTATTCGTGGGTTCGCTGTGATTGTTGTTTTGAAGGTTCCATTTGGGAAGGCGGCTTTCTTCCCGGGGCGTTTGGTTCATACTAACGAGTTTCTGGTAATGTATTGTACTCTCTTACAACTTTTGGGAAACTTATTCTCTGTATGATTGATAAAGAAGGGACAAGGGTATTATATGTTAGGATCTCCACCCAACAATCCTCCCTCGAACAAAGTACCTTGAGGCCTATGGAGCCCTCGAACAACCTTTCCCTTAATCGACTCGACTCGACTCCTTCTCTGGAGTTTTCAAACAAAGTAAACCATTTATTCGACATTTGAGGATTCTATTGACATGGCAAAGTTAAGGGTGATATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGTTTTGGGCTTCCCCAAAGGAACCCATACCAATGGAGATGTATTCCTTACTTATAAACCCACGATCATTCCCTAAATTAGTCAAATGTGGGACTCCTTCCCAACCATTCTCAACATTATACGCCCATGGATTCATTAAATAGATGTTCATATTGGTTTTCGAGCACATGAGAGTAGTTCCTATCGTTCTTCTTCTGTTCTATTAAATAGATGTTCACTCTTAACTACTCTCAAAGTTCATTGTTGAATCCCCTTGTACTGCTTTTAACTCTGGTGCAAAATTAAGGGAAAAAGAGAACATTATTGGGTTTAACTAGATCATTGTTTATGCTTTTGATCAAATGTTTGTGGCCGAGTTCTGGAAAGAATATGCGGTGAGGTTTACTTTTCAGAACGTCGAGTTGAGAACCGGACTTATCCATGTGCAGGTTCTTCTGGGAGAAGGTTATTATGCTGAGAGAACATCGAAACAAACGGTCGAGATCTTGAAAAGGAGAGGTAAAGCTTTGGATTCTCAAGTTGATTCTCTGAAGGCCATGATGGATGATCTTAAGGCTGAGGCCTCATTTTTTGATGCTACGGCGTCCGAAGCTGCGGTAAGCTTAGCAATTTATCGGTGAACTATATACCGTAACGTGAAGTTGATAAAAATTTGAGGTTTACCTAGAAGCTAGTACATGTATTTTTGTTGTATTTACCAGATTATCCTACGATGTCGATGTTGATGTTCTTTATATTGCTACCAGGAGGGTCTTGTCGAGATAACTGAGGAGTATGTGGAGGAAGACAATAGTGAGCAGGAATCTGGATCAGGTCGGTTCTTATCCTCATCTCCATCCTATTGTTACTTGTTAGGATTGACAATTTGGCATTGAAAGACATGTGAGCCCTTGTCTATCGTATTATATATATGAATAAATGTAACAGCTCAAGCCTACCGCTAGCCAGATATTATCCGCTTTAGCCCATTACATATCGTTGTCTACCTCATGGTTTTAAAACGTGTCTCACGGTTTATAAGGAATGTTTCGTTCCTCTCTTCAACTGATGTGGGATCTCACAATCCACCCTCCTTGGGGGCTAGCATCCTCGCTGGCACACCATTCGGTGTCTGGCTTTAATACCATTTGTAACCGCCCAAGTCCATCACTAGCAAATATTGTCCACTTTAGCCTGTTATGTTTCGTCGTCAGCCCAACAGTTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACACTCTTATAATGAATGTTTTGTTCCCCTCTCCAACTGATGTGGGATCTCACAAATAATGTACTTGGTTTTTGGAGTTGCCAAGCATGCATCATAATCACAGTCCGATGTTTATACAAACTACTTGTAAACACAGGTAAAACGGATGAATTACGATGATGTTATGTTTCTTTTCAGGAGTAAACAAGCAAGATGCTCCCAGTGTTTCTGGAGTTGATGAGGCAAGGATTACAGAAGAAGATGAAGAATATGCTCGTATAATGTCCAGATTGGATGAACTCGAGAAGGAGGAAGAACTTGCTGCCGCAAACGACAACCAAAACGATGAAGAAGGTGAGGAAGAGAAAGAAACTTCAAATCAATCCTTGGAGAAGCTTCATGATGCTAAGCACAGCTATTCAAAGGTAGTGTCAGAATCAAATACCTTAGAGATTTAAAGCTCCCGGAAATGCATGGTTATCGACAAACTTACTCGATGAATTTGTGATGTATTGTTAACCATTTCTAATGATTGATCGCTTCGAAACATTCTCAGGCAAGTACATCTCCGTGTCGGAGGGATGAAAATATAGGTAGTAAAGAGCTACTGGATAAGTATCAGCAGCAACAACAAGAGGCTTCTACCAATCCATCAAATGTGACCAACCTCTTATTTGCTTTACTGTTTATTACTGTCTGTGTTCTTTGTTAAAACAGCATTCATTATTAAATCATGTATATATTCGTTATGCAGTGTTCAAATTTTTCAGAACAGTCTTCATCCAAAGGTTCGTTACATGGCAACAGTTCTTCGACTCAGACTCGGGGAATGAGAAACACTAATTCTGCTGCAAAGTCTGTAACATTTGCTGAAGTAAAAGAAAAGAATCAAACATTGCCTGCATCTACCAGTGAGGTACTTTCAAGCTTGTTTATTGTATAGATTCTTTAGCTGCCTGTTCGTCTAAAGCTATGGATTTGTCCATAATTTTGAGGTTAGTTATAAGATTCGGCCTCGTTAATCCGTGTTGTGTCGTCTCTGTCGGGTGTAGGCTTTCACGGGATCCATTGTCGAGCGCCCTCCTATTGTGCCGAAAATTTCTAAACAAGAAACAGAAACCCCATTGCAGGTGGGTTTGCGTAGTTTACACCATTTTTATTGCCATCATTGTACTAGTTCATTCATTGATGCTAAAGCTAACTGTTGATTTGGGCAGCCTTCTGGTCCTCAACCTTCAAAACCAGTATCCAGGTTCAAGATGCAAAGAAGATAGCGAGCTGCACGCCGCAATGTCGTACTTAAAGAAGTTTGAAAATTTTGGTAGCAATCGATTTTGTTCGAGTTCTGTATGGGCCTTGGTGTCTGATTGCAACAGGAAGAAAGAACAGTCTGATTAACATACTAAATTCATGGCTTGGAACAGTTTTGAAGGAAATACTTTGGTTCACTGCCAATCTACATTTTCACTGCTTTTTTAACGATGAACCTGCTTGTTGAAATCTACGTTTGGAGGGTAACTCGGTCGGTCGTGTGGTTTTTTCTTATGTTAAATAAGTTACAAACCTATATGAGAAACAAAATTATAAGTTGAAATATTTTTTATGTTAA

mRNA sequence

ATGAATTCGGTTGCTTCAATTGGAGTCAAACACAAGAACTACCAAGAAGCACGACACCCACAGTCGGATACAGATGTTAATCGCAAGCAAGCCGTCGAGGTCGCCGCGCTGTCTGAGTTCTGTCATCGTCGAGCTGGCTGCGTGAGGTTGAAGCGCTACCCAATTCTTGAGAGCGGGATGATCATGGAAGGAGGAGGAGGAGGAGCAAAGGGAACGGTGGCGGCGCTGTCCTCATTATTTCCGGCACAGGATGCCCACAAGGCAGCGATGCGCGTCCAAGATGCGATTTCTGAGAAGCAGAGGGAGCTTGAGCATCTCCGAGGTTTCATCTCTGATAATGCTAACCTGATCAACCTTGTCCAGAAATTACCTGAAGAGCTGCACCATGAAGTCATGGTTCCATTTGGGAAGGCGGCTTTCTTCCCGGGGCGTTTGGTTCATACTAACGAGTTTCTGGTTCTTCTGGGAGAAGGTTATTATGCTGAGAGAACATCGAAACAAACGGTCGAGATCTTGAAAAGGAGAGGTAAAGCTTTGGATTCTCAAGTTGATTCTCTGAAGGCCATGATGGATGATCTTAAGGCTGAGGCCTCATTTTTTGATGCTACGGCGTCCGAAGCTGCGGAGGGTCTTGTCGAGATAACTGAGGAGTATGTGGAGGAAGACAATAGTGAGCAGGAATCTGGATCAGTTGATGAGGCAAGGATTACAGAAGAAGATGAAGAATATGCTCGTATAATGTCCAGATTGGATGAACTCGAGAAGGAGGAAGAACTTGCTGCCGCAAACGACAACCAAAACGATGAAGAAGGTGAGGAAGAGAAAGAAACTTCAAATCAATCCTTGGAGAAGCTTCATGATGCTAAGCACAGCTATTCAAAGGCAAGTACATCTCCGTGTCGGAGGGATGAAAATATAGGTAGTAAAGAGCTACTGGATAAGTATCAGCAGCAACAACAAGAGGCTTCTACCAATCCATCAAATGTGACCAACCTCTTATTTGCTTTACTGTTTATTACTTGTTCAAATTTTTCAGAACAGTCTTCATCCAAAGGTTCGTTACATGGCAACAGTTCTTCGACTCAGACTCGGGGAATGAGAAACACTAATTCTGCTGCAAAGTCTGTAACATTTGCTGAAGTAAAAGAAAAGAATCAAACATTGCCTGCATCTACCAGTGAGGCTTTCACGGGATCCATTGTCGAGCGCCCTCCTATTGTGCCGAAAATTTCTAAACAAGAAACAGAAACCCCATTGCAGCCTTCTGGTCCTCAACCTTCAAAACCAGTATCCAGGTTCAAGATGCAAAGAAGATAGCGAGCTGCACGCCGCAATGTCGTACTTAAAGAAGTTTGAAAATTTTGGTAGCAATCGATTTTGTTCGAGTTCTGTATGGGCCTTGGTGTCTGATTGCAACAGGAAGAAAGAACAGTCTGATTAACATACTAAATTCATGGCTTGGAACAGTTTTGAAGGAAATACTTTGGTTCACTGCCAATCTACATTTTCACTGCTTTTTTAACGATGAACCTGCTTGTTGAAATCTACGTTTGGAGGGTAACTCGGTCGGTCGTGTGGTTTTTTCTTATGTTAAATAAGTTACAAACCTATATGAGAAACAAAATTATAAGTTGAAATATTTTTTATGTTAA

Coding sequence (CDS)

ATGAATTCGGTTGCTTCAATTGGAGTCAAACACAAGAACTACCAAGAAGCACGACACCCACAGTCGGATACAGATGTTAATCGCAAGCAAGCCGTCGAGGTCGCCGCGCTGTCTGAGTTCTGTCATCGTCGAGCTGGCTGCGTGAGGTTGAAGCGCTACCCAATTCTTGAGAGCGGGATGATCATGGAAGGAGGAGGAGGAGGAGCAAAGGGAACGGTGGCGGCGCTGTCCTCATTATTTCCGGCACAGGATGCCCACAAGGCAGCGATGCGCGTCCAAGATGCGATTTCTGAGAAGCAGAGGGAGCTTGAGCATCTCCGAGGTTTCATCTCTGATAATGCTAACCTGATCAACCTTGTCCAGAAATTACCTGAAGAGCTGCACCATGAAGTCATGGTTCCATTTGGGAAGGCGGCTTTCTTCCCGGGGCGTTTGGTTCATACTAACGAGTTTCTGGTTCTTCTGGGAGAAGGTTATTATGCTGAGAGAACATCGAAACAAACGGTCGAGATCTTGAAAAGGAGAGGTAAAGCTTTGGATTCTCAAGTTGATTCTCTGAAGGCCATGATGGATGATCTTAAGGCTGAGGCCTCATTTTTTGATGCTACGGCGTCCGAAGCTGCGGAGGGTCTTGTCGAGATAACTGAGGAGTATGTGGAGGAAGACAATAGTGAGCAGGAATCTGGATCAGTTGATGAGGCAAGGATTACAGAAGAAGATGAAGAATATGCTCGTATAATGTCCAGATTGGATGAACTCGAGAAGGAGGAAGAACTTGCTGCCGCAAACGACAACCAAAACGATGAAGAAGGTGAGGAAGAGAAAGAAACTTCAAATCAATCCTTGGAGAAGCTTCATGATGCTAAGCACAGCTATTCAAAGGCAAGTACATCTCCGTGTCGGAGGGATGAAAATATAGGTAGTAAAGAGCTACTGGATAAGTATCAGCAGCAACAACAAGAGGCTTCTACCAATCCATCAAATGTGACCAACCTCTTATTTGCTTTACTGTTTATTACTTGTTCAAATTTTTCAGAACAGTCTTCATCCAAAGGTTCGTTACATGGCAACAGTTCTTCGACTCAGACTCGGGGAATGAGAAACACTAATTCTGCTGCAAAGTCTGTAACATTTGCTGAAGTAAAAGAAAAGAATCAAACATTGCCTGCATCTACCAGTGAGGCTTTCACGGGATCCATTGTCGAGCGCCCTCCTATTGTGCCGAAAATTTCTAAACAAGAAACAGAAACCCCATTGCAGCCTTCTGGTCCTCAACCTTCAAAACCAGTATCCAGGTTCAAGATGCAAAGAAGATAG

Protein sequence

MNSVASIGVKHKNYQEARHPQSDTDVNRKQAVEVAALSEFCHRRAGCVRLKRYPILESGMIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSLKAMMDDLKAEASFFDATASEAAEGLVEITEEYVEEDNSEQESGSVDEARITEEDEEYARIMSRLDELEKEEELAAANDNQNDEEGEEEKETSNQSLEKLHDAKHSYSKASTSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQSSSKGSLHGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIVPKISKQETETPLQPSGPQPSKPVSRFKMQRR

Homology

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BLAST of Carg18460 vs. NCBI nr
Match: XP_022943608.1 (RNA polymerase II subunit 5-mediating protein homolog [Cucurbita moschata] >XP_022943609.1 RNA polymerase II subunit 5-mediating protein homolog [Cucurbita moschata])

HSP 1 Score: 591.3 bits (1523), Expect = 2.7e-165
Identity = 351/391 (89.77%), Postives = 352/391 (90.03%), Query Frame = 0


Query: 60  MIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINL 119
           MIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHL GFISDNANLINL
Sbjct: 1   MIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLLGFISDNANLINL 60

Query: 120 VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL 179
           VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL
Sbjct: 61  VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL 120

Query: 180 DSQVDSLKAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS--------- 239
           DSQVDSLKAMMXXXX EASFFDATASEAAEGLVEITEEYVEEDNSEQESGS         
Sbjct: 121 DSQVDSLKAMMXXXXAEASFFDATASEAAEGLVEITEEYVEEDNSEQESGSGVNKQDAPS 180

Query: 240 ---VDEARITEEDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHD 299
              VDEARITEEDEEYARIMSRLDELEK          XXXXXXXXXXXXXX  LEKLHD
Sbjct: 181 VSGVDEARITEEDEEYARIMSRLDELEKEEELAAANDNXXXXXXXXXXXXXXXXLEKLHD 240

Query: 300 AKHSYSKASTSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQ 359
           AKHSYSKASTSPCRRDE+IGSKELLDKYQQQQQEASTNPSN            CSNFSEQ
Sbjct: 241 AKHSYSKASTSPCRRDEDIGSKELLDKYQQQQQEASTNPSN------------CSNFSEQ 300

Query: 360 SSSKGSLHGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIV 419
           SSSKGSLHGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIV
Sbjct: 301 SSSKGSLHGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIV 360

Query: 420 PKISKQETETPLQPSGPQPSKPVSRFKMQRR 439
           PKISKQETETPLQPSG QPSKPVSRFKMQRR
Sbjct: 361 PKISKQETETPLQPSGSQPSKPVSRFKMQRR 379

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BLAST of Carg18460 vs. NCBI nr
Match: XP_023512548.1 (RNA polymerase II subunit 5-mediating protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 584.7 bits (1506), Expect = 2.6e-163
Identity = 356/391 (91.05%), Postives = 361/391 (92.33%), Query Frame = 0


Query: 60  MIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINL 119
           MIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAIS+KQRELEHLRGFISDNANLINL
Sbjct: 1   MIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISDKQRELEHLRGFISDNANLINL 60

Query: 120 VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL 179
           VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL
Sbjct: 61  VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL 120

Query: 180 DSQVDSLKAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS--------- 239
           DSQVDSLKAMMXXXX EASFFDATASEAAEGLVEITEEYVEEDNSEQESGS         
Sbjct: 121 DSQVDSLKAMMXXXXAEASFFDATASEAAEGLVEITEEYVEEDNSEQESGSGVNKQDAPS 180

Query: 240 ---VDEARITEEDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHD 299
              VDEARITEEDEEYARIMSRLDELE XXXXXXXXXXXXXXXXXXXXXXXXQS+EKLHD
Sbjct: 181 VSGVDEARITEEDEEYARIMSRLDELEXXXXXXXXXXXXXXXXXXXXXXXXXQSMEKLHD 240

Query: 300 AKHSYSKASTSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQ 359
           AKHSYSKASTSPCRRDE+IGSKELLDKYQQQ   ASTNPSN            CSNFSEQ
Sbjct: 241 AKHSYSKASTSPCRRDEDIGSKELLDKYQQQXXXASTNPSN------------CSNFSEQ 300

Query: 360 SSSKGSLHGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIV 419
           SSSKGSLHGN+SSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPI+
Sbjct: 301 SSSKGSLHGNNSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIM 360

Query: 420 PKISKQETETPLQPSGPQPSKPVSRFKMQRR 439
           PKISKQETETPLQPSG QPSKPVSRFKMQRR
Sbjct: 361 PKISKQETETPLQPSGSQPSKPVSRFKMQRR 379

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BLAST of Carg18460 vs. NCBI nr
Match: XP_022985987.1 (RNA polymerase II subunit 5-mediating protein homolog [Cucurbita maxima] >XP_022985988.1 RNA polymerase II subunit 5-mediating protein homolog [Cucurbita maxima] >XP_022985989.1 RNA polymerase II subunit 5-mediating protein homolog [Cucurbita maxima])

HSP 1 Score: 570.5 bits (1469), Expect = 5.0e-159
Identity = 353/391 (90.28%), Postives = 359/391 (91.82%), Query Frame = 0


Query: 60  MIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINL 119
           MIME GGGGAKGTVA+LSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINL
Sbjct: 1   MIME-GGGGAKGTVASLSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINL 60

Query: 120 VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL 179
           VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL
Sbjct: 61  VQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKAL 120

Query: 180 DSQVDSLKAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS--------- 239
           DSQVDSLKA  XXXXXEASFFDATASEAAEGLVEITEEYVEE+NSEQESGS         
Sbjct: 121 DSQVDSLKAXXXXXXXEASFFDATASEAAEGLVEITEEYVEENNSEQESGSGVNKQDAPS 180

Query: 240 ---VDEARITEEDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHD 299
              VDEARITEEDEEYARIMSRLDEL  XXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHD
Sbjct: 181 VSGVDEARITEEDEEYARIMSRLDELXXXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHD 240

Query: 300 AKHSYSKASTSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQ 359
           AKHSYSKAST PC+RDE+IGSKELLDKYQQQQ EASTNPSN            CSNFSEQ
Sbjct: 241 AKHSYSKASTFPCQRDEDIGSKELLDKYQQQQXEASTNPSN------------CSNFSEQ 300

Query: 360 SSSKGSLHGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIV 419
           SSSKGSLHGN+SSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPI+
Sbjct: 301 SSSKGSLHGNNSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIM 360

Query: 420 PKISKQETETPLQPSGPQPSKPVSRFKMQRR 439
           PKISKQETETPLQPSG QPSKPVSRFKMQRR
Sbjct: 361 PKISKQETETPLQPSGSQPSKPVSRFKMQRR 378

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BLAST of Carg18460 vs. NCBI nr
Match: XP_022149690.1 (RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Momordica charantia])

HSP 1 Score: 445.7 bits (1145), Expect = 1.9e-121
Identity = 291/385 (75.58%), Postives = 323/385 (83.90%), Query Frame = 0


Query: 67  GGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEE 126
           GGAKGTV +LSSLFPA+DAHKAA RVQD +SEKQ+EL+ LRGFISDNANLINLVQKLPEE
Sbjct: 4   GGAKGTVTSLSSLFPAEDAHKAAARVQDTLSEKQKELDCLRGFISDNANLINLVQKLPEE 63

Query: 127 LHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSL 186
           L+HEVMVPFGKAAFFPGRL+HTNEFLVLLGEGYYAERTSKQ VEILKRRGKALDSQVDSL
Sbjct: 64  LYHEVMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQAVEILKRRGKALDSQVDSL 123

Query: 187 KAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS------------VDEA 246
           KA  XXXXXEASFFDATASEAAEGLVEI EEYVEE++SE+E  S            VD+A
Sbjct: 124 KAXXXXXXXEASFFDATASEAAEGLVEIKEEYVEENSSEREPESGVNKQDVHSVPEVDKA 183

Query: 247 RITEEDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHDAKHSYSK 306
           +ITEEDEEYARIM+RLDELEKXXXXXXXXXXXXXXXXXXXXXXXX  LEK HD +  +SK
Sbjct: 184 KITEEDEEYARIMARLDELEKXXXXXXXXXXXXXXXXXXXXXXXXXXLEKFHDEELRFSK 243

Query: 307 ASTSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQSSSKGSL 366
            STSP +R++NIGS+E L KY QQQ+EAS +PSN            C+  S QS ++ +L
Sbjct: 244 TSTSPWQREKNIGSEEPLGKY-QQQEEASNDPSN------------CTGLSVQSLARDTL 303

Query: 367 HGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIVPKISKQE 426
           HGN+SSTQ   +RN +SAAKSVTFAE +EKNQTLP S+SEAFTGSI+ERPPI+ K SKQE
Sbjct: 304 HGNNSSTQR--VRNPSSAAKSVTFAEAREKNQTLPPSSSEAFTGSIIERPPIISKTSKQE 363

Query: 427 TETPLQ-PSGPQPSKPVSRFKMQRR 439
           TETPLQ PS  QPSKPVSRFKMQRR
Sbjct: 364 TETPLQMPSSSQPSKPVSRFKMQRR 373

[Close]

BLAST of Carg18460 vs. NCBI nr
Match: XP_022149689.1 (RNA polymerase II subunit 5-mediating protein homolog isoform X1 [Momordica charantia])

HSP 1 Score: 441.0 bits (1133), Expect = 4.6e-120
Identity = 291/386 (75.39%), Postives = 323/386 (83.68%), Query Frame = 0


Query: 67  GGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEE 126
           GGAKGTV +LSSLFPA+DAHKAA RVQD +SEKQ+EL+ LRGFISDNANLINLVQKLPEE
Sbjct: 4   GGAKGTVTSLSSLFPAEDAHKAAARVQDTLSEKQKELDCLRGFISDNANLINLVQKLPEE 63

Query: 127 LHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSL 186
           L+HEVMVPFGKAAFFPGRL+HTNEFLVLLGEGYYAERTSKQ VEILKRRGKALDSQVDSL
Sbjct: 64  LYHEVMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQAVEILKRRGKALDSQVDSL 123

Query: 187 KAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS------------VDEA 246
           KA  XXXXXEASFFDATASEAAEGLVEI EEYVEE++SE+E  S            VD+A
Sbjct: 124 KAXXXXXXXEASFFDATASEAAEGLVEIKEEYVEENSSEREPESGVNKQDVHSVPEVDKA 183

Query: 247 RITEEDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHDAKHSYSK 306
           +ITEEDEEYARIM+RLDELEKXXXXXXXXXXXXXXXXXXXXXXXX  LEK HD +  +SK
Sbjct: 184 KITEEDEEYARIMARLDELEKXXXXXXXXXXXXXXXXXXXXXXXXXXLEKFHDEELRFSK 243

Query: 307 ASTSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQS-SSKGS 366
            STSP +R++NIGS+E L KY QQQ+EAS +PSN            C+  S QS + + +
Sbjct: 244 TSTSPWQREKNIGSEEPLGKY-QQQEEASNDPSN------------CTGLSVQSLAREDT 303

Query: 367 LHGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIVPKISKQ 426
           LHGN+SSTQ   +RN +SAAKSVTFAE +EKNQTLP S+SEAFTGSI+ERPPI+ K SKQ
Sbjct: 304 LHGNNSSTQR--VRNPSSAAKSVTFAEAREKNQTLPPSSSEAFTGSIIERPPIISKTSKQ 363

Query: 427 ETETPLQ-PSGPQPSKPVSRFKMQRR 439
           ETETPLQ PS  QPSKPVSRFKMQRR
Sbjct: 364 ETETPLQMPSSSQPSKPVSRFKMQRR 374

[Close]

BLAST of Carg18460 vs. TAIR10
Match: AT1G03760.1 (Prefoldin chaperone subunit family protein)

HSP 1 Score: 173.7 bits (439), Expect = 2.5e-43
Identity = 149/400 (37.25%), Postives = 204/400 (51.00%), Query Frame = 0


Query: 69  AKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEELH 128
           AKGTV  L   F  +D  KAA  +++ I EK+ E+  L+ ++ +N NLINLV+KLP++LH
Sbjct: 5   AKGTVTPLG--FSEEDVRKAASYMEEKIGEKRVEMNRLQQYVDENDNLINLVKKLPDQLH 64

Query: 129 HEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSLKA 188
           H VMVPFGK AFFPGRL+HTNE LVLLGE YY +R+SKQTV+ LKRR K L SQ+ S   
Sbjct: 65  HNVMVPFGKMAFFPGRLIHTNECLVLLGENYYTDRSSKQTVDFLKRRDKTLQSQIHSXXX 124

Query: 189 MMXXXXXEASFFDATASEAAEGLVEITEEYVEED--------NSEQESGSVDEARITE-- 248
             XXXXX          E A+GLVEI EEYVEED        +SE+E  ++ E    E  
Sbjct: 125 XXXXXXXXXXXXXXXXXEVADGLVEIREEYVEEDSSAPVVIHSSEKEPCNLSEGETEEGE 184

Query: 249 -EDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHDAKHSYSKAST 308
            ED+++ARIM+RL+ELE                          S+E +   +H   K S 
Sbjct: 185 LEDDDFARIMARLNELE-------IEEELEGEDGDSRGEDPDSSVESVEQIQHDLVKGSR 244

Query: 309 SPCRRDE-NIGSKELLDKYQQQQQEASTNP----SNVTNLLFALLFITCSN--------- 368
               R     G +E       +    S++P      V   +  +L  T  +         
Sbjct: 245 GETDRGRVEYGKQETTISVPNKASGHSSSPRVSEPRVEAKIIQVLPETHPHKDLDDPLNR 304

Query: 369 ---FSEQSSSKGSLHGNSSSTQTRGMRNTNSAAKSVTFAEVK-EKNQTLPA-STSEAFTG 428
               ++  S +G   G +        ++  + AK+      K E  +  P   +++AFTG
Sbjct: 305 IRPMAQYLSKEGQSRGGTPQQNAETWKDFRTNAKTNVLGPQKIEPQKPEPEFDSTKAFTG 364

Query: 429 SIVERPPIVPKISKQETETPLQPSGPQPSKPVSRFKMQRR 439
           SIVE   I+   +  +T    Q S  QPSKPVSRF+ +RR
Sbjct: 365 SIVEHAHILETSAHSQT----QSSTSQPSKPVSRFRAKRR 391

[Close]

BLAST of Carg18460 vs. Swiss-Prot
Match: sp|Q54HG4|RMP_DICDI (RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum OX=44689 GN=rmp PE=3 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-18
Identity = 49/132 (37.12%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 91  RVQDAISEKQRELEHLRGFISDNANLINLVQKLPEELHHEVMVPFGKAAFFPGRLVHTNE 150
           + +  + E Q  +E L+   +D   LI+ +Q LP+ L  ++MVP GK AFF G L +TNE
Sbjct: 9   KYEQKVVEYQDHIEELKSTKNDYKQLIDTLQHLPDTLQPKIMVPMGKLAFFEGNLKNTNE 68

Query: 151 FLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSLKAMMXXXXXEAS----FFDATASE 210
            L+LLG+ Y+A+R+SKQT++I++RR K +D+ ++ L+  +       S       A   +
Sbjct: 69  ILILLGDNYFAKRSSKQTIDIIQRRDKDIDTSINDLREQIKGLKQRVSMTTDLSKALHEK 128

Query: 211 AAEGLVEITEEY 219
             + +VEI EEY
Sbjct: 129 EYDNIVEIKEEY 140

[Close]

BLAST of Carg18460 vs. Swiss-Prot
Match: sp|Q3TLD5|RMP_MOUSE (Unconventional prefoldin RPB5 interactor OS=Mus musculus OX=10090 GN=Uri1 PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-13
Identity = 42/127 (33.07%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 93  QDAISEKQRELEHLRGFISDNANLINLVQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFL 152
           +  ++  Q +++H     +D + L   ++ LP++L ++VMVPFG  AF PG+LVHTNE  
Sbjct: 36  EKVVTNCQEKIQHWEKVDNDYSALQERLRTLPDKLSYDVMVPFGPLAFMPGKLVHTNEVT 95

Query: 153 VLLGEGYYAERTSKQTVEILKRRGKALDSQVDSLKAMMXXXXXEASFFD--ATASEAAEG 212
           VLLG+ ++A+ ++KQ V +++ R + +   +D  K ++        F +     S+AA  
Sbjct: 96  VLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDFKKVLKNFESRVEFTEDLQKMSDAAGD 155

Query: 213 LVEITEE 218
            V+I EE
Sbjct: 156 FVDIREE 162

[Close]

BLAST of Carg18460 vs. Swiss-Prot
Match: sp|O94763|RMP_HUMAN (Unconventional prefoldin RPB5 interactor 1 OS=Homo sapiens OX=9606 GN=URI1 PE=1 SV=3)

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-12
Identity = 54/193 (27.98%), Postives = 97/193 (50.26%), Query Frame = 0


Query: 82  AQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEELHHEVMVPFGKAAFF 141
           A D  +     +  ++  Q  ++H +   +D   L   +  LP++L + +MVPFG  AF 
Sbjct: 27  APDVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFM 86

Query: 142 PGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSLKAMMXXXXXEASFFD 201
           PG+LVHTNE  VLLG+ ++A+ ++KQ V +++ R + +   +D LK +M        F +
Sbjct: 87  PGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTE 146

Query: 202 --ATASEAAEGLVEITEE------------YVEEDNSEQESGSVDEARITEEDEEY---- 256
                S+AA  +V+I EE               + +S+ ++  + EA I  + +      
Sbjct: 147 DLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLA 206

[Close]

BLAST of Carg18460 vs. Swiss-Prot
Match: sp|Q3B7M7|RMP_BOVIN (Unconventional prefoldin RPB5 interactor OS=Bos taurus OX=9913 GN=URI1 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.2e-12
Identity = 53/185 (28.65%), Postives = 95/185 (51.35%), Query Frame = 0


Query: 93  QDAISEKQRELEHLRGFISDNANLINLVQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFL 152
           +  ++  Q +++H +   +D   L   +  LP++L + +MVPFG  AF PG+LVHTNE  
Sbjct: 30  EKVVTNCQEKIQHWKKVDNDYNALQERLSTLPDKLSYNIMVPFGPFAFMPGKLVHTNEVT 89

Query: 153 VLLGEGYYAERTSKQTVEILKRRGKALDSQVDSLKAMMXXXXXEASFFD--ATASEAAEG 212
           VLLG+ ++A+ ++KQ V +++ R + +   +D LK +M        F +     S+AA  
Sbjct: 90  VLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQKMSDAAGD 149

Query: 213 LVEITEE------------YVEEDNSEQESGSVDEARITEE--------DEEYARIMSRL 256
           +V+I EE               + +S+ ++  + EA    +        D+E   +  RL
Sbjct: 150 IVDIREEIKTDFEFKAKHRIAHKPHSKPKTSDIFEAEFANDLKSKDLLADKE---LWDRL 209

[Close]

BLAST of Carg18460 vs. Swiss-Prot
Match: sp|Q9W148|URI_DROME (Unconventional prefoldin RPB5 interactor-like protein OS=Drosophila melanogaster OX=7227 GN=uri PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-08
Identity = 42/131 (32.06%), Postives = 63/131 (48.09%), Query Frame = 0


Query: 95  AISEKQRELEHLRGFISDNANLINLVQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVL 154
           A+     E E    F  DN + I  + K  + L  EVMVP G+ A  PG L+HTNE LV 
Sbjct: 11  ALQTNASETERWEAFKRDNESTIRNLDKFAKNLSVEVMVPIGRKALMPGELIHTNELLVG 70

Query: 155 LGEGYYAERTSKQTVEILKRRGKALDSQVDSLKAMMXXXXXEASFFDATASEAAEGLVEI 214
             EGY++  +S +  EI + R K  + Q+  L         +     A  +  +   VEI
Sbjct: 71  HYEGYFSACSSHKAKEICQYRLKLAEEQLKKLAVENDLWQKKLHTPFAEGAVPSGDQVEI 130

Query: 215 TEEYVEEDNSE 226
            E++ EE +++
Sbjct: 131 VEDFNEESHNK 141

[Close]

BLAST of Carg18460 vs. TrEMBL
Match: tr|A0A0A0KB27|A0A0A0KB27_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127400 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.7e-111
Identity = 276/395 (69.87%), Postives = 304/395 (76.96%), Query Frame = 0


Query: 57  ESGMIMEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANL 116
           +SG+IME   G  KGTV +L+SLFPAQDA KAA RVQDAISEKQRELE LRGFI+DN NL
Sbjct: 77  QSGVIME--SGRVKGTVTSLASLFPAQDARKAASRVQDAISEKQRELEQLRGFITDNDNL 136

Query: 117 INLVQKLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRG 176
           I LVQKLPEELHHEVMVPFGKAAFFPGRL+HTNEFLVLLGEGYYAERTSKQT EILKRRG
Sbjct: 137 IKLVQKLPEELHHEVMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQTAEILKRRG 196

Query: 177 KALDSQVDSLKAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS------ 236
           KALDSQVD      XXXXX         SEA +GLVEI EEYVEE+  EQES S      
Sbjct: 197 KALDSQVDXXXXXXXXXXXXXXXXXXXXSEAEDGLVEIKEEYVEENFCEQESTSGVNKQD 256

Query: 237 ------VDEARITEEDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEK 296
                 VD+A+I E D EYAR+M+R DELEKXXXXXXXXXXXXXXXXXXXXX   QSLE+
Sbjct: 257 VPSVSGVDKAKIAEIDAEYARMMARFDELEKXXXXXXXXXXXXXXXXXXXXXTQNQSLER 316

Query: 297 LHDAKHSYSKASTSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNF 356
            +  K S SK STS   RDEN+ SKELL+KY Q+QQEASTNPSN            CS  
Sbjct: 317 FYGDKQSLSKGSTSTWPRDENVSSKELLNKY-QKQQEASTNPSN------------CSGL 376

Query: 357 SEQSSSKGSL-HGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVER 416
           S Q+S K  +  GN+S T+++ + N N AAKSVTFAEVKEKNQTLP ST++AFTGSI+ER
Sbjct: 377 SVQTSPKEDVTSGNNSLTESQRVINPNPAAKSVTFAEVKEKNQTLPPSTNQAFTGSIIER 436

Query: 417 PPIVPKISKQETETPLQPSGPQPSKPVSRFKMQRR 439
           PPI+PK SKQETET LQPSG QPSKPVSRFKMQRR
Sbjct: 437 PPIIPKTSKQETETTLQPSGSQPSKPVSRFKMQRR 456

[Close]

BLAST of Carg18460 vs. TrEMBL
Match: tr|A0A1S3BK98|A0A1S3BK98_CUCME (RNA polymerase II subunit 5-mediating protein homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490540 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.2e-108
Identity = 272/384 (70.83%), Postives = 293/384 (76.30%), Query Frame = 0


Query: 67  GGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEE 126
           G  KGTV  LSSLFPAQDA KAA RVQ AISE Q++LE L+GFI+DN N+I LVQKLPEE
Sbjct: 4   GRVKGTVTPLSSLFPAQDARKAASRVQAAISENQKKLEQLQGFITDNENMIKLVQKLPEE 63

Query: 127 LHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSL 186
           LHHEVMVPFGKAAFFPGRL+HTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVD  
Sbjct: 64  LHHEVMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDXX 123

Query: 187 KAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS-----------VDEAR 246
               XXXXX             EGLVEI EEYVEE+  EQE  S           VDEA+
Sbjct: 124 XXXXXXXXXXXXXXXXXXXXXXEGLVEIKEEYVEENFCEQELTSVNKQDVTRVSGVDEAK 183

Query: 247 ITEEDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHDAKHSYSKA 306
           I E D EYAR+M+R DELE XXXXXXXXXXXXXXXXXXXXXX  QSLEK +D K SYS+ 
Sbjct: 184 IAEIDAEYARMMARFDELEXXXXXXXXXXXXXXXXXXXXXXXPNQSLEKFYDDKQSYSEG 243

Query: 307 STSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQSSSKGSL- 366
           STS   RDEN+ SKELLDKY Q+QQEASTNPSN            CS  S QSS K  + 
Sbjct: 244 STSAWLRDENVSSKELLDKY-QKQQEASTNPSN------------CSGLSVQSSPKEDVT 303

Query: 367 HGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIVPKISKQE 426
            GNSS TQ++ +RN N AAKSV FAEVKEK QTLP STS+AFTGSI+ERPPI+PK SKQE
Sbjct: 304 SGNSSLTQSQRVRNPNPAAKSVKFAEVKEKTQTLPPSTSQAFTGSIIERPPIIPKTSKQE 363

Query: 427 TETPLQPSGPQPSKPVSRFKMQRR 439
           TETPLQPSG QPSKPVSRFKMQRR
Sbjct: 364 TETPLQPSGSQPSKPVSRFKMQRR 374

[Close]

BLAST of Carg18460 vs. TrEMBL
Match: tr|A0A1S4DX32|A0A1S4DX32_CUCME (RNA polymerase II subunit 5-mediating protein homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490540 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.6e-108
Identity = 272/385 (70.65%), Postives = 293/385 (76.10%), Query Frame = 0


Query: 67  GGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEE 126
           G  KGTV  LSSLFPAQDA KAA RVQ AISE Q++LE L+GFI+DN N+I LVQKLPEE
Sbjct: 4   GRVKGTVTPLSSLFPAQDARKAASRVQAAISENQKKLEQLQGFITDNENMIKLVQKLPEE 63

Query: 127 LHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSL 186
           LHHEVMVPFGKAAFFPGRL+HTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVD  
Sbjct: 64  LHHEVMVPFGKAAFFPGRLIHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDXX 123

Query: 187 KAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS------------VDEA 246
               XXXXX             EGLVEI EEYVEE+  EQE  S            VDEA
Sbjct: 124 XXXXXXXXXXXXXXXXXXXXXXEGLVEIKEEYVEENFCEQELTSGVNKQDVTRVSGVDEA 183

Query: 247 RITEEDEEYARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHDAKHSYSK 306
           +I E D EYAR+M+R DELE XXXXXXXXXXXXXXXXXXXXXX  QSLEK +D K SYS+
Sbjct: 184 KIAEIDAEYARMMARFDELEXXXXXXXXXXXXXXXXXXXXXXXPNQSLEKFYDDKQSYSE 243

Query: 307 ASTSPCRRDENIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQSSSKGSL 366
            STS   RDEN+ SKELLDKY Q+QQEASTNPSN            CS  S QSS K  +
Sbjct: 244 GSTSAWLRDENVSSKELLDKY-QKQQEASTNPSN------------CSGLSVQSSPKEDV 303

Query: 367 -HGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSEAFTGSIVERPPIVPKISKQ 426
             GNSS TQ++ +RN N AAKSV FAEVKEK QTLP STS+AFTGSI+ERPPI+PK SKQ
Sbjct: 304 TSGNSSLTQSQRVRNPNPAAKSVKFAEVKEKTQTLPPSTSQAFTGSIIERPPIIPKTSKQ 363

Query: 427 ETETPLQPSGPQPSKPVSRFKMQRR 439
           ETETPLQPSG QPSKPVSRFKMQRR
Sbjct: 364 ETETPLQPSGSQPSKPVSRFKMQRR 375

[Close]

BLAST of Carg18460 vs. TrEMBL
Match: tr|A0A2P4KUI3|A0A2P4KUI3_QUESU (Rna polymerase ii subunit 5-mediating protein like OS=Quercus suber OX=58331 GN=CFP56_32684 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 2.0e-71
Identity = 223/431 (51.74%), Postives = 270/431 (62.65%), Query Frame = 0


Query: 62  MEGGGGGAKGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQ 121
           ME       GTV +L+ +FPA+DA KA  RVQ+ ++E Q EL  +RGFISDN+NLINLVQ
Sbjct: 1   MEESAKKGTGTVTSLAEMFPAEDAQKAVKRVQEKLAEIQNELNRVRGFISDNSNLINLVQ 60

Query: 122 KLPEELHHEVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDS 181
           KLPE+LHH ++VPFGKAAFFPGRLVHTNE +VLLGEGYYAERTSKQTVEILKRRGK L+S
Sbjct: 61  KLPEQLHHNIIVPFGKAAFFPGRLVHTNEIMVLLGEGYYAERTSKQTVEILKRRGKVLES 120

Query: 182 QVDSLKAMMXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGS----------- 241
           QV+SLKA+M     E SFFD+TASEAAEGL+EITE+YVEE+++E+ES S           
Sbjct: 121 QVESLKAIMRDLKAETSFFDSTASEAAEGLLEITEDYVEENSTERESESGPPKEDAPSFS 180

Query: 242 -VDEARITEEDEEYARIMSRLDELEK-----------------XXXXXXXXXXXXXXXXX 301
             D+A+++ EDEEYARIMSRLDELEK                 XXXXXXXXXXXXXXXXX
Sbjct: 181 EADKAKVSVEDEEYARIMSRLDELEKEELEAECGNEXXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 302 XXXXXXXQSLEKLHD--AKHSYSKASTSPCRRDENIGSKELLDKYQQQQQEASTN----- 361
           XXXXXXX   EK+ D   K S  K+  +  R  E   S+ELL+  Q + ++++T      
Sbjct: 241 XXXXXXXXXXEKIKDDFNKLSDQKSLDTNLRHSEGYQSRELLE--QTKDKKSATEEFLSK 300

Query: 362 ---PSNVTNLLFAL-LFITCSNFSEQSSSKGSLHGNSSSTQTRGMRNTNSAAKSVTFAEV 421
                ++TN L  + L +      E+S  K  LH    S+            K++   EV
Sbjct: 301 CDPQKDLTNQLNCMGLAVQSVPEDEKSHGKSLLHNVIKSSPPE---------KALMLPEV 360

Query: 422 KEKNQTLPASTSE--------------AFTGSIVERPPIVPKISKQETETPLQPSGPQPS 439
           KE  Q  P S SE              AFTGSI+ER       S QE+ T  Q    QPS
Sbjct: 361 KENVQPAPLSRSEVPAQSSKPGFDAHKAFTGSIIERTHNTHINSSQESATSSQSPSFQPS 420

[Close]

BLAST of Carg18460 vs. TrEMBL
Match: tr|A0A2P5DNK6|A0A2P5DNK6_9ROSA (Prefoldin alpha subunit, archaea-type OS=Trema orientalis OX=63057 GN=TorRG33x02_246350 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.9e-70
Identity = 189/385 (49.09%), Postives = 225/385 (58.44%), Query Frame = 0


Query: 70  KGTVAALSSLFPAQDAHKAAMRVQDAISEKQRELEHLRGFISDNANLINLVQKLPEELHH 129
           KGTV  LSSLF A++A KAA RVQD I EKQ+EL+ LRGFIS+NANLIN VQ+LPE+LHH
Sbjct: 6   KGTVTPLSSLFGAEEAQKAAKRVQDTIDEKQQELDGLRGFISENANLINTVQRLPEQLHH 65

Query: 130 EVMVPFGKAAFFPGRLVHTNEFLVLLGEGYYAERTSKQTVEILKRRGKALDSQVDSLKAM 189
           +VMVPFGKAAFFPGRL+HTNEF+VLLGEGYYAE TSKQTVEILKRR K L+SQVDSL AM
Sbjct: 66  DVMVPFGKAAFFPGRLIHTNEFMVLLGEGYYAETTSKQTVEILKRREKNLESQVDSLNAM 125

Query: 190 MXXXXXEASFFDATASEAAEGLVEITEEYVEEDNSEQESGSV-------DEARITEEDEE 249
           M     EASFFD TASEA EG+VEI E+YVEE + ++ES  V       D  ++  EDE+
Sbjct: 126 MQDLKAEASFFDRTASEAEEGIVEIREDYVEESSVDRESEPVSSSISEEDNKKVKIEDED 185

Query: 250 YARIMSRLDELEKXXXXXXXXXXXXXXXXXXXXXXXXQSLEKLHDAKHSYSKASTSPCRR 309
           +ARIMSR DELEK                             LH  K+     S  P  +
Sbjct: 186 FARIMSRFDELEKEELAAESNNEGDEDEPTKADLDSFSDKISLHGIKNPEKPESRKPMEQ 245

Query: 310 DE---NIGSKELLDKYQQQQQEASTNPSNVTNLLFALLFITCSNFSEQSSSKGS-----L 369
            E    +     LD  +Q  Q             FA   +T  + SE  SS  S     +
Sbjct: 246 AEVKKTVTKASYLDDDKQYYQHKD----------FACTGLTVQSISEDGSSHSSSLDPNV 305

Query: 370 HGNSSSTQTRGMRNTNSAAKSVTFAEVKEKNQTLPASTSE-AFTGSIVERPPIVPKISKQ 429
             ++  T        N  A S   ++V  +    P   S+ AFTGSIVE    +   S++
Sbjct: 306 KKSTEKTLLPPEMENNLQAFSSLRSQVPVQTPKPPKFDSQKAFTGSIVEHADNIETSSRK 365

Query: 430 ETETPLQPSGPQPSKPVSRFKMQRR 439
              TP Q SG QPSKPVSRFKMQRR
Sbjct: 366 --PTPSQSSGSQPSKPVSRFKMQRR 378

The following BLAST results are available for this feature:

BLAST of Carg18460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943608.1	2.7e-165	89.77	RNA polymerase II subunit 5-mediating protein homolog [Cucurbita moschata] >XP_0...	[more]
XP_023512548.1	2.6e-163	91.05	RNA polymerase II subunit 5-mediating protein homolog [Cucurbita pepo subsp. pep...	[more]
XP_022985987.1	5.0e-159	90.28	RNA polymerase II subunit 5-mediating protein homolog [Cucurbita maxima] >XP_022...	[more]
XP_022149690.1	1.9e-121	75.58	RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Momordica char...	[more]
XP_022149689.1	4.6e-120	75.39	RNA polymerase II subunit 5-mediating protein homolog isoform X1 [Momordica char...	[more]

BLAST of Carg18460 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03760.1	2.5e-43	37.25	Prefoldin chaperone subunit family protein	[more]

BLAST of Carg18460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54HG4\|RMP_DICDI	5.9e-18	37.12	RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideu...	[more]
sp\|Q3TLD5\|RMP_MOUSE	2.6e-13	33.07	Unconventional prefoldin RPB5 interactor OS=Mus musculus OX=10090 GN=Uri1 PE=1 S...	[more]
sp\|O94763\|RMP_HUMAN	3.7e-12	27.98	Unconventional prefoldin RPB5 interactor 1 OS=Homo sapiens OX=9606 GN=URI1 PE=1 ...	[more]
sp\|Q3B7M7\|RMP_BOVIN	8.2e-12	28.65	Unconventional prefoldin RPB5 interactor OS=Bos taurus OX=9913 GN=URI1 PE=2 SV=1	[more]
sp\|Q9W148\|URI_DROME	1.9e-08	32.06	Unconventional prefoldin RPB5 interactor-like protein OS=Drosophila melanogaster...	[more]

BLAST of Carg18460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KB27\|A0A0A0KB27_CUCSA	5.7e-111	69.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127400 PE=4 SV=1	[more]
tr\|A0A1S3BK98\|A0A1S3BK98_CUCME	1.2e-108	70.83	RNA polymerase II subunit 5-mediating protein homolog isoform X2 OS=Cucumis melo...	[more]
tr\|A0A1S4DX32\|A0A1S4DX32_CUCME	1.6e-108	70.65	RNA polymerase II subunit 5-mediating protein homolog isoform X1 OS=Cucumis melo...	[more]
tr\|A0A2P4KUI3\|A0A2P4KUI3_QUESU	2.0e-71	51.74	Rna polymerase ii subunit 5-mediating protein like OS=Quercus suber OX=58331 GN=...	[more]
tr\|A0A2P5DNK6\|A0A2P5DNK6_9ROSA	4.9e-70	49.09	Prefoldin alpha subunit, archaea-type OS=Trema orientalis OX=63057 GN=TorRG33x02...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0051082	unfolded protein binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016272	prefoldin complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

Vocabulary: **INTERPRO**
Term	Definition
IPR004127	Prefoldin_subunit_alpha
IPR009053	Prefoldin
IPR011599	PFD_alpha_archaea

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18460-RA	Carg18460-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 236..263
None	No IPR available	COILS	Coil	Coil	coord: 176..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 413..429
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..398
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..438
None	No IPR available	PANTHER	PTHR15111	RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3	coord: 75..320
None	No IPR available	CDD	cd00584	Prefoldin_alpha	coord: 96..208 e-value: 4.4587E-23 score: 93.0631
None	No IPR available	SUPERFAMILY	SSF46579	Prefoldin	coord: 93..200
IPR011599	Prefoldin alpha subunit, archaea-type	TIGRFAM	TIGR00293	TIGR00293	coord: 88..206 e-value: 7.0E-17 score: 59.7
IPR009053	Prefoldin	GENE3D	G3DSA:1.10.287.370		coord: 83..209 e-value: 1.6E-20 score: 75.2
IPR004127	Prefoldin alpha-like	PFAM	PF02996	Prefoldin	coord: 93..207 e-value: 8.9E-25 score: 86.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18460	Cla013551	Watermelon (97103) v1	carwmB0412
Carg18460	Csa6G127400	Cucumber (Chinese Long) v2	carcuB0447
Carg18460	MELO3C013631	Melon (DHL92) v3.5.1	carmeB0417
Carg18460	ClCG02G017750	Watermelon (Charleston Gray)	carwcgB0408
Carg18460	CSPI06G10320	Wild cucumber (PI 183967)	carcpiB0452
Carg18460	Cucsa.119220	Cucumber (Gy14) v1	carcgyB0479
Carg18460	CmaCh20G002070	Cucurbita maxima (Rimu)	carcmaB0575
Carg18460	CmoCh20G002270	Cucurbita moschata (Rifu)	carcmoB0559
Carg18460	Lsi10G016070	Bottle gourd (USVL1VR-Ls)	carlsiB377
Carg18460	Cp4.1LG16g07690	Cucurbita pepo (Zucchini)	carcpeB0579
Carg18460	CsGy6G010410	Cucumber (Gy14) v2	carcgybB0423
Carg18460	MELO3C013631.2	Melon (DHL92) v3.6.1	carmedB0421
Carg18460	CsaV3_6G012810	Cucumber (Chinese Long) v3	carcucB0448
Carg18460	Cla97C02G043510	Watermelon (97103) v2	carwmbB0438
Carg18460	Bhi10G000847	Wax gourd	carwgoB0500

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18460	Silver-seed gourd	carcarB032
Carg18460	Cucurbita maxima (Rimu)	carcmaB0574
Carg18460	Cucurbita maxima (Rimu)	carcmaB0577
Carg18460	Cucurbita moschata (Rifu)	carcmoB0558
Carg18460	Cucurbita moschata (Rifu)	carcmoB0561
Carg18460	Cucurbita pepo (Zucchini)	carcpeB0578
Carg18460	Cucurbita pepo (Zucchini)	carcpeB0581
Carg18460	Melon (DHL92) v3.5.1	carmeB0420
Carg18460	Melon (DHL92) v3.6.1	carmedB0424