Carg18178 (gene) Silver-seed gourd

Overview
NameCarg18178
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionVacuolar protein sorting-associated protein 29
LocationCucurbita_argyrosperma_scaffold_136 : 287402 .. 289084 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTTGGTGTTGGCTTTGGGGGATTTGCATATACCACATAGAGCCCCTGACCTGCCGGAGAAGTTCAAGTCTATGCTTGTTCCTGGCAAGATTCAGCACATCATCTGCACCGGTAACCTTTGTATCAAAGTATGTTCAAATCTTCTTATTGAATTTTCATCTTTCCATGGAAATCCTCAATCCTCAATCCTCAATCCTCAATCTGTCCTATCCTAGCTTGATTTTCCCTTACATCATTAATCTCACTGATGATTTTAATTACTTCTGGGTCTGATTTCATCATGATCTTTTCCTTAGAAAGTGTCCTGGATAGTTTTATGTGCATTATTTTTTCTTCTTTTGATATAGTATTCATTTGTTTTTTATTTTCTGCTCACTATATCATATTTAAGCTTATCCCAAGGATCCATCATCCAAGTAAGTACAGAGGTCATGCTGGTAACATTCTTTTGTTCCGTTAAATTGCATAAGATTTGGAGAAACTTCCCAGGGACAATGCAGTATTCTGTTGTGGTGATTGTAACATCACCAATTGGGTGGTAGTTCAGTGGATTTTCCCCCATATATTGAAATGCTTAGATAATCAGCGTATAAGCTCATCCCATTCTTAACTTGAACCAAATTTTCTCCATTTTGTGTACTGGACCTTTGGGTTACTTTAGTTTAAACCAAACTTTTACAACTTGTAATGATGATCTCTGTTTAACATTCCTTGTGGCTTAACTCTAAATGTGAAGCTTTATGACTGAAGATCTTAGATTTAAGGAAAAGGAAAACTGTGGATTTGAAATCCTTTTCTGGGAAACTTGTTTGCATTAAATATCTCACGATTTAATAGAAAACATCAAGTTCATGTTGTTGGAATGAGCATTAACTTCTGTTTGGATCTCTCTGTTCATCATATATGGGTTCGAACTTTTGGGGCTTTGATCAATATGTTTATCACCAACTTGCATGTAATTTGTTTAATTGATCGTATAAGAAATGGAGCTGTGTTGTTGAATTGGTTTATATCTCCTTGGGAGAAAAATTGATGTGATGGTTCAAAGTTTATTGTTGACATTTCCAGGAAGTTCACGACTACTTGAAAACTATTTGTCCTGATTTGCACATTACACGGGGCGAATATGATGAAGAAATGCGTTATCCAGAGACAAAAACTCTGACTATTGGACAATTTAAATTGGGACTGTGCCATGGGCATCAGGTACTGTCTACCATTATAAACTTCAAGAGCCTGAATATTGGAGCTTCTGATTCATTGTCTTTTGTAACCATGAACAGCAAGTTATATTTCTTCAATATTTGCTACCAGAAGTCACCACCAGAAAATAAGTGGTGAAATCTGGCATTTATTTGTTGGTGGCTGGCTTTTGTTTGTAGGTTATTCCATGGGGAGACTTAGACTCGCTTGCCATGATGCAGAGGCAGCTAGACGTAGACATCCTTGTCACTGGTCATACCCATCAATTTACAGCTTACAAACACGAGGGAGGTGTTGTGATTAACCCCGGATCTGCAACAGGTGCGTATAGCAGCATCACCTATGACGTCAACCCGAGCTTTGTTCTCATGGACATCGATGGCCTTCGTGTTGTGGTCTACGTTTACGAACTCATCGATGGAGAGGTTAAGGTAGACAAGATTGATTTCAAGAAGACAACCACAACCGGTCATTGA

mRNA sequence

ATGGTGTTGGTGTTGGCTTTGGGGGATTTGCATATACCACATAGAGCCCCTGACCTGCCGGAGAAGTTCAAGTCTATGCTTGTTCCTGGCAAGATTCAGCACATCATCTGCACCGGTAACCTTTGTATCAAAGAAGTTCACGACTACTTGAAAACTATTTGTCCTGATTTGCACATTACACGGGGCGAATATGATGAAGAAATGCGTTATCCAGAGACAAAAACTCTGACTATTGGACAATTTAAATTGGGACTGTGCCATGGGCATCAGGTTATTCCATGGGGAGACTTAGACTCGCTTGCCATGATGCAGAGGCAGCTAGACGTAGACATCCTTGTCACTGGTCATACCCATCAATTTACAGCTTACAAACACGAGGGAGGTGTTGTGATTAACCCCGGATCTGCAACAGGTGCGTATAGCAGCATCACCTATGACGTCAACCCGAGCTTTGTTCTCATGGACATCGATGGCCTTCGTGTTGTGGTCTACGTTTACGAACTCATCGATGGAGAGGTTAAGGTAGACAAGATTGATTTCAAGAAGACAACCACAACCGGTCATTGA

Coding sequence (CDS)

ATGGTGTTGGTGTTGGCTTTGGGGGATTTGCATATACCACATAGAGCCCCTGACCTGCCGGAGAAGTTCAAGTCTATGCTTGTTCCTGGCAAGATTCAGCACATCATCTGCACCGGTAACCTTTGTATCAAAGAAGTTCACGACTACTTGAAAACTATTTGTCCTGATTTGCACATTACACGGGGCGAATATGATGAAGAAATGCGTTATCCAGAGACAAAAACTCTGACTATTGGACAATTTAAATTGGGACTGTGCCATGGGCATCAGGTTATTCCATGGGGAGACTTAGACTCGCTTGCCATGATGCAGAGGCAGCTAGACGTAGACATCCTTGTCACTGGTCATACCCATCAATTTACAGCTTACAAACACGAGGGAGGTGTTGTGATTAACCCCGGATCTGCAACAGGTGCGTATAGCAGCATCACCTATGACGTCAACCCGAGCTTTGTTCTCATGGACATCGATGGCCTTCGTGTTGTGGTCTACGTTTACGAACTCATCGATGGAGAGGTTAAGGTAGACAAGATTGATTTCAAGAAGACAACCACAACCGGTCATTGA

Protein sequence

MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHITRGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTTTTGH
Homology
[Close]
BLAST of Carg18178 vs. NCBI nr
Match: XP_023529239.1 (vacuolar protein sorting-associated protein 29 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.7 bits (1018), Expect = 4.3e-107
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTTTGH
Sbjct: 181 KKTTTTGH 188

[Close]
BLAST of Carg18178 vs. NCBI nr
Match: XP_022932429.1 (vacuolar protein sorting-associated protein 29 [Cucurbita moschata])

HSP 1 Score: 394.8 bits (1013), Expect = 1.6e-106
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTT GH
Sbjct: 181 KKTTTAGH 188

[Close]
BLAST of Carg18178 vs. NCBI nr
Match: XP_004138157.1 (PREDICTED: vacuolar protein sorting-associated protein 29 [Cucumis sativus] >XP_008453189.1 PREDICTED: vacuolar protein sorting-associated protein 29 [Cucumis melo] >KGN63660.1 hypothetical protein Csa_1G009640 [Cucumis sativus])

HSP 1 Score: 392.1 bits (1006), Expect = 1.1e-105
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEE RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTTT H
Sbjct: 181 KKTTTTAH 188

[Close]
BLAST of Carg18178 vs. NCBI nr
Match: XP_022135231.1 (vacuolar protein sorting-associated protein 29 [Momordica charantia])

HSP 1 Score: 392.1 bits (1006), Expect = 1.1e-105
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEE RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEESRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTTT H
Sbjct: 181 KKTTTTAH 188

[Close]
BLAST of Carg18178 vs. NCBI nr
Match: XP_022921574.1 (vacuolar protein sorting-associated protein 29-like [Cucurbita moschata] >XP_022987203.1 vacuolar protein sorting-associated protein 29 [Cucurbita maxima] >XP_023515675.1 vacuolar protein sorting-associated protein 29-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389.8 bits (1000), Expect = 5.2e-105
Identity = 185/188 (98.40%), Postives = 185/188 (98.40%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEE RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTT  H
Sbjct: 181 KKTTTPAH 188

[Close]
BLAST of Carg18178 vs. TAIR10
Match: AT3G47810.2 (Calcineurin-like metallo-phosphoesterase superfamily protein)

HSP 1 Score: 357.8 bits (917), Expect = 4.0e-99
Identity = 168/186 (90.32%), Postives = 174/186 (93.55%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLH+PHRA DLP KFKSMLVPGKIQHIICTGNLCIKE+HDYLKTICPDLHI 
Sbjct: 1   MVLVLALGDLHVPHRAADLPPKFKSMLVPGKIQHIICTGNLCIKEIHDYLKTICPDLHIV 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGE+DE+ RYPE KTLTIGQFKLGLCHGHQVIPWGDLDSLAM+QRQL VDILVTGHTHQF
Sbjct: 61  RGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLGVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSI  DVNPSFVLMDIDG R VVYVYELIDGEVKVDKI+F
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFRAVVYVYELIDGEVKVDKIEF 180

Query: 181 KKTTTT 187
           KK  TT
Sbjct: 181 KKPPTT 186

[Close]
BLAST of Carg18178 vs. Swiss-Prot
Match: sp|Q9STT2|VPS29_ARATH (Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana OX=3702 GN=VPS29 PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 7.2e-98
Identity = 168/186 (90.32%), Postives = 174/186 (93.55%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLH+PHRA DLP KFKSMLVPGKIQHIICTGNLCIKE+HDYLKTICPDLHI 
Sbjct: 1   MVLVLALGDLHVPHRAADLPPKFKSMLVPGKIQHIICTGNLCIKEIHDYLKTICPDLHIV 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGE+DE+ RYPE KTLTIGQFKLGLCHGHQVIPWGDLDSLAM+QRQL VDILVTGHTHQF
Sbjct: 61  RGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLGVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSI  DVNPSFVLMDIDG R VVYVYELIDGEVKVDKI+F
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFRAVVYVYELIDGEVKVDKIEF 180

Query: 181 KKTTTT 187
           KK  TT
Sbjct: 181 KKPPTT 186

[Close]
BLAST of Carg18178 vs. Swiss-Prot
Match: sp|Q7ZV68|VPS29_DANRE (Vacuolar protein sorting-associated protein 29 OS=Danio rerio OX=7955 GN=vps29 PE=2 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-70
Identity = 118/182 (64.84%), Postives = 150/182 (82.42%), Query Frame = 0 

Query: 2   VLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHITR 61
           +LVL LGDLHIPHR   LP KFK +LVPGKIQHI+CTGNLC KE +DYLKT+  D+HI R
Sbjct: 1   MLVLVLGDLHIPHRCNTLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60

Query: 62  GEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQFT 121
           G++DE + YPE K +T+GQFK+GL HGHQVIPWGD+ SLA++QRQLDVDIL++GHTH+F 
Sbjct: 61  GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQLDVDILISGHTHKFE 120

Query: 122 AYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
           A+++E    INPGSATGAYS++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++K
Sbjct: 121 AFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 180

Query: 182 KT 184
           K+
Sbjct: 181 KS 182

[Close]
BLAST of Carg18178 vs. Swiss-Prot
Match: sp|Q9QZ88|VPS29_MOUSE (Vacuolar protein sorting-associated protein 29 OS=Mus musculus OX=10090 GN=Vps29 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-70
Identity = 117/182 (64.29%), Postives = 149/182 (81.87%), Query Frame = 0 

Query: 2   VLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHITR 61
           +LVL LGDLHIPHR   LP KFK +LVPGKIQHI+CTGNLC KE +DYLKT+  D+HI R
Sbjct: 1   MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60

Query: 62  GEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQFT 121
           G++DE + YPE K +T+GQFK+GL HGHQVIPWGD+ SLA++QRQ DVDIL++GHTH+F 
Sbjct: 61  GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 120

Query: 122 AYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
           A++HE    INPGSATGAY+++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++K
Sbjct: 121 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 180

Query: 182 KT 184
           K+
Sbjct: 181 KS 182

[Close]
BLAST of Carg18178 vs. Swiss-Prot
Match: sp|Q5R9Z1|VPS29_PONAB (Vacuolar protein sorting-associated protein 29 OS=Pongo abelii OX=9601 GN=VPS29 PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-70
Identity = 117/182 (64.29%), Postives = 149/182 (81.87%), Query Frame = 0 

Query: 2   VLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHITR 61
           +LVL LGDLHIPHR   LP KFK +LVPGKIQHI+CTGNLC KE +DYLKT+  D+HI R
Sbjct: 1   MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60

Query: 62  GEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQFT 121
           G++DE + YPE K +T+GQFK+GL HGHQVIPWGD+ SLA++QRQ DVDIL++GHTH+F 
Sbjct: 61  GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 120

Query: 122 AYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
           A++HE    INPGSATGAY+++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++K
Sbjct: 121 AFEHENKFYINPGSATGAYNALEANIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 180

Query: 182 KT 184
           K+
Sbjct: 181 KS 182

[Close]
BLAST of Carg18178 vs. Swiss-Prot
Match: sp|B2RZ78|VPS29_RAT (Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus OX=10116 GN=Vps29 PE=1 SV=2)

HSP 1 Score: 266.5 bits (680), Expect = 2.2e-70
Identity = 117/182 (64.29%), Postives = 149/182 (81.87%), Query Frame = 0 

Query: 2   VLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHITR 61
           +LVL LGDLHIPHR   LP KFK +LVPGKIQHI+CTGNLC KE +DYLKT+  D+HI R
Sbjct: 1   MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR 60

Query: 62  GEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQFT 121
           G++DE + YPE K +T+GQFK+GL HGHQVIPWGD+ SLA++QRQ DVDIL++GHTH+F 
Sbjct: 61  GDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 120

Query: 122 AYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFK 181
           A++HE    INPGSATGAY+++  ++ PSFVLMDI    VV YVY+LI  +VKV++I++K
Sbjct: 121 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK 180

Query: 182 KT 184
           K+
Sbjct: 181 KS 182

[Close]
BLAST of Carg18178 vs. TrEMBL
Match: tr|A0A1S3BWS4|A0A1S3BWS4_CUCME (Vacuolar protein sorting-associated protein 29 OS=Cucumis melo OX=3656 GN=LOC103493980 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 7.0e-106
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEE RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTTT H
Sbjct: 181 KKTTTTAH 188

[Close]
BLAST of Carg18178 vs. TrEMBL
Match: tr|A0A0A0LP31|A0A0A0LP31_CUCSA (Vacuolar protein sorting-associated protein 29 OS=Cucumis sativus OX=3659 GN=Csa_1G009640 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 7.0e-106
Identity = 186/188 (98.94%), Postives = 186/188 (98.94%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEE RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTTT H
Sbjct: 181 KKTTTTAH 188

[Close]
BLAST of Carg18178 vs. TrEMBL
Match: tr|A0A067K8B8|A0A067K8B8_JATCU (Vacuolar protein sorting-associated protein 29 OS=Jatropha curcas OX=180498 GN=JCGZ_11604 PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.3e-104
Identity = 183/188 (97.34%), Postives = 186/188 (98.94%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLP KFKSMLVPGKIQHIICTGNLCIKEVHDYLKT+CPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTLCPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM+QRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKT+TT H
Sbjct: 181 KKTSTTPH 188

[Close]
BLAST of Carg18178 vs. TrEMBL
Match: tr|A0A2I4F4M8|A0A2I4F4M8_9ROSI (Vacuolar protein sorting-associated protein 29 OS=Juglans regia OX=51240 GN=LOC108995472 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 6.5e-104
Identity = 181/188 (96.28%), Postives = 184/188 (97.87%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLH+PHRAPDLP KFKSMLVPGKIQHIICTGNLCIKEVHDYLKT+CPDLHIT
Sbjct: 1   MVLVLALGDLHVPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTLCPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEE RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM+QRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTT  H
Sbjct: 181 KKTTTASH 188

[Close]
BLAST of Carg18178 vs. TrEMBL
Match: tr|A0A2P5F770|A0A2P5F770_9ROSA (Vacuolar protein sorting-associated protein 29 OS=Trema orientalis OX=63057 GN=TorRG33x02_106340 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 8.5e-104
Identity = 182/188 (96.81%), Postives = 184/188 (97.87%), Query Frame = 0 

Query: 1   MVLVLALGDLHIPHRAPDLPEKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICPDLHIT 60
           MVLVLALGDLHIPHRAPDLP KFKSMLVPGKIQHIICTGNLCIKEVHDYLKT+CPDLHIT
Sbjct: 1   MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTLCPDLHIT 60

Query: 61  RGEYDEEMRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMMQRQLDVDILVTGHTHQF 120
           RGEYDEE RYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAM+QRQLDVDILVTGHTHQF
Sbjct: 61  RGEYDEETRYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQF 120

Query: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180
           TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF
Sbjct: 121 TAYKHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 180

Query: 181 KKTTTTGH 189
           KKTTT  H
Sbjct: 181 KKTTTNTH 188

The following BLAST results are available for this feature:
BLAST of Carg18178 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023529239.14.3e-107100.00vacuolar protein sorting-associated protein 29 [Cucurbita pepo subsp. pepo][more]
XP_022932429.11.6e-10699.47vacuolar protein sorting-associated protein 29 [Cucurbita moschata][more]
XP_004138157.11.1e-10598.94PREDICTED: vacuolar protein sorting-associated protein 29 [Cucumis sativus] >XP_... [more]
XP_022135231.11.1e-10598.94vacuolar protein sorting-associated protein 29 [Momordica charantia][more]
XP_022921574.15.2e-10598.40vacuolar protein sorting-associated protein 29-like [Cucurbita moschata] >XP_022... [more]
BLAST of Carg18178 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G47810.24.0e-9990.32Calcineurin-like metallo-phosphoesterase superfamily protein[more]
BLAST of Carg18178 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9STT2|VPS29_ARATH7.2e-9890.32Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana OX=3702 G... [more]
sp|Q7ZV68|VPS29_DANRE1.3e-7064.84Vacuolar protein sorting-associated protein 29 OS=Danio rerio OX=7955 GN=vps29 P... [more]
sp|Q9QZ88|VPS29_MOUSE2.2e-7064.29Vacuolar protein sorting-associated protein 29 OS=Mus musculus OX=10090 GN=Vps29... [more]
sp|Q5R9Z1|VPS29_PONAB2.2e-7064.29Vacuolar protein sorting-associated protein 29 OS=Pongo abelii OX=9601 GN=VPS29 ... [more]
sp|B2RZ78|VPS29_RAT2.2e-7064.29Vacuolar protein sorting-associated protein 29 OS=Rattus norvegicus OX=10116 GN=... [more]
BLAST of Carg18178 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BWS4|A0A1S3BWS4_CUCME7.0e-10698.94Vacuolar protein sorting-associated protein 29 OS=Cucumis melo OX=3656 GN=LOC103... [more]
tr|A0A0A0LP31|A0A0A0LP31_CUCSA7.0e-10698.94Vacuolar protein sorting-associated protein 29 OS=Cucumis sativus OX=3659 GN=Csa... [more]
tr|A0A067K8B8|A0A067K8B8_JATCU1.3e-10497.34Vacuolar protein sorting-associated protein 29 OS=Jatropha curcas OX=180498 GN=J... [more]
tr|A0A2I4F4M8|A0A2I4F4M8_9ROSI6.5e-10496.28Vacuolar protein sorting-associated protein 29 OS=Juglans regia OX=51240 GN=LOC1... [more]
tr|A0A2P5F770|A0A2P5F770_9ROSA8.5e-10496.81Vacuolar protein sorting-associated protein 29 OS=Trema orientalis OX=63057 GN=T... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030904retromer complex
Vocabulary: Biological Process
TermDefinition
GO:0042147retrograde transport, endosome to Golgi
Vocabulary: INTERPRO
TermDefinition
IPR028661Vps29
IPR024654Calcineurin-like_PHP_lpxH
IPR029052Metallo-depent_PP-like
IPR000979Phosphodiesterase_MJ0936/Vps29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042147 retrograde transport, endosome to Golgi
cellular_component GO:0030904 retromer complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg18178-RACarg18178-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000979Phosphodiesterase MJ0936/Vps29TIGRFAMTIGR00040TIGR00040coord: 3..157
e-value: 6.7E-30
score: 102.2
IPR000979Phosphodiesterase MJ0936/Vps29PANTHERPTHR11124VACUOLAR SORTING PROTEIN VPS29coord: 1..182
IPR029052Metallo-dependent phosphatase-likeGENE3DG3DSA:3.60.21.10coord: 1..182
e-value: 6.0E-77
score: 260.1
IPR024654Calcineurin-like phosphoesterase domain, lpxH typePFAMPF12850Metallophos_2coord: 4..157
e-value: 1.4E-19
score: 70.8
IPR028661Vacuolar protein sorting-associated protein 29PANTHERPTHR11124:SF12VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29coord: 1..182
IPR028661Vacuolar protein sorting-associated protein 29CDDcd07394MPP_Vps29coord: 3..180
e-value: 5.7164E-122
score: 344.192
NoneNo IPR availableSUPERFAMILYSSF56300Metallo-dependent phosphatasescoord: 1..181

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg18178Cla019122Watermelon (97103) v1carwmB0613
Carg18178Csa1G009640Cucumber (Chinese Long) v2carcuB0638
Carg18178MELO3C017163Melon (DHL92) v3.5.1carmeB0616
Carg18178ClCG06G016300Watermelon (Charleston Gray)carwcgB0598
Carg18178CSPI01G02170Wild cucumber (PI 183967)carcpiB0645
Carg18178Cucsa.197600Cucumber (Gy14) v1carcgyB0689
Carg18178CmaCh11G001530Cucurbita maxima (Rimu)carcmaB0861
Carg18178CmoCh11G001550Cucurbita moschata (Rifu)carcmoB0838
Carg18178Lsi06G014760Bottle gourd (USVL1VR-Ls)carlsiB560
Carg18178Cp4.1LG18g08030Cucurbita pepo (Zucchini)carcpeB0871
Carg18178Cp4.1LG04g15020Cucurbita pepo (Zucchini)carcpeB0874
Carg18178CsGy1G002240Cucumber (Gy14) v2carcgybB0611
Carg18178MELO3C017163.2Melon (DHL92) v3.6.1carmedB0623
Carg18178CsaV3_1G002230Cucumber (Chinese Long) v3carcucB0646
Carg18178Cla97C06G125900Watermelon (97103) v2carwmbB0640
Carg18178Bhi02G000240Wax gourdcarwgoB0732
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg18178Carg10404Silver-seed gourdcarcarB392
The following block(s) are covering this gene:
GeneOrganismBlock
Carg18178Watermelon (97103) v2carwmbB0637
Carg18178Watermelon (97103) v2carwmbB0639
Carg18178Watermelon (97103) v2carwmbB0641
Carg18178Wax gourdcarwgoB0729
Carg18178Wax gourdcarwgoB0730
Carg18178Silver-seed gourdcarcarB478
Carg18178Cucumber (Gy14) v2carcgybB0613
Carg18178Cucumber (Gy14) v1carcgyB0687
Carg18178Cucurbita maxima (Rimu)carcmaB0859
Carg18178Cucurbita maxima (Rimu)carcmaB0864
Carg18178Cucurbita moschata (Rifu)carcmoB0837
Carg18178Cucurbita pepo (Zucchini)carcpeB0870
Carg18178Wild cucumber (PI 183967)carcpiB0647
Carg18178Cucumber (Chinese Long) v2carcuB0640
Carg18178Bottle gourd (USVL1VR-Ls)carlsiB559
Carg18178Melon (DHL92) v3.5.1carmeB0614
Carg18178Melon (DHL92) v3.6.1carmedB0621
Carg18178Watermelon (Charleston Gray)carwcgB0595
Carg18178Watermelon (Charleston Gray)carwcgB0596
Carg18178Watermelon (97103) v1carwmB0610